data_1IBG
#
_model_server_result.job_id            ZdpGoXRTCC00gi3nL5i0Hw 
_model_server_result.datetime_utc      '2024-11-07 04:37:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ibg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    1IBG 
#
_exptl.entry_id    1IBG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              584.652 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            OUABAIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.95 
_cell.angle_gamma         90 
_cell.entry_id            1IBG 
_cell.length_a            93.66 
_cell.length_b            84.77 
_cell.length_c            70.08 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IBG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 23 1_555 A SG CYS 91 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 137 L CYS 134 1_555 A SG CYS 197 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf3 B SG CYS 21 H CYS 22 1_555 B SG CYS 94 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf4 B SG CYS 147 H CYS 142 1_555 B SG CYS 202 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C29 H44 O12' 
_chem_comp.formula_weight    584.652 
_chem_comp.id                OBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              OUABAIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OBN sing 237 n n 
C1 C10 OBN sing 238 n n 
C1 O1 OBN sing 239 n n 
C1 H1 OBN sing 240 n n 
C2 C3 OBN sing 241 n n 
C2 H21 OBN sing 242 n n 
C2 H22A OBN sing 243 n n 
C3 C4 OBN sing 244 n n 
C3 O3 OBN sing 245 n n 
C3 H3 OBN sing 246 n n 
C4 C5 OBN sing 247 n n 
C4 H41 OBN sing 248 n n 
C4 H42 OBN sing 249 n n 
C5 C6 OBN sing 250 n n 
C5 C10 OBN sing 251 n n 
C5 O5 OBN sing 252 n n 
C6 C7 OBN sing 253 n n 
C6 H61 OBN sing 254 n n 
C6 H62 OBN sing 255 n n 
C7 C8 OBN sing 256 n n 
C7 H71 OBN sing 257 n n 
C7 H72 OBN sing 258 n n 
C8 C9 OBN sing 259 n n 
C8 C14 OBN sing 260 n n 
C8 H8 OBN sing 261 n n 
C9 C10 OBN sing 262 n n 
C9 C11 OBN sing 263 n n 
C9 H9 OBN sing 264 n n 
C10 C19 OBN sing 265 n n 
C11 C12 OBN sing 266 n n 
C11 O11 OBN sing 267 n n 
C11 H11 OBN sing 268 n n 
C12 C13 OBN sing 269 n n 
C12 H121 OBN sing 270 n n 
C12 H122 OBN sing 271 n n 
C13 C14 OBN sing 272 n n 
C13 C17 OBN sing 273 n n 
C13 C18 OBN sing 274 n n 
C14 C15 OBN sing 275 n n 
C14 O14 OBN sing 276 n n 
C15 C16 OBN sing 277 n n 
C15 H151 OBN sing 278 n n 
C15 H152 OBN sing 279 n n 
C16 C17 OBN sing 280 n n 
C16 H161 OBN sing 281 n n 
C16 H162 OBN sing 282 n n 
C17 C20 OBN sing 283 n n 
C17 H17 OBN sing 284 n n 
C18 H181 OBN sing 285 n n 
C18 H182 OBN sing 286 n n 
C18 H183 OBN sing 287 n n 
C19 O19 OBN sing 288 n n 
C19 H191 OBN sing 289 n n 
C19 H192 OBN sing 290 n n 
C20 C21 OBN sing 291 n n 
C20 C22 OBN doub 292 n n 
C21 O21 OBN sing 293 n n 
C21 H211 OBN sing 294 n n 
C21 H212 OBN sing 295 n n 
C22 C23 OBN sing 296 n n 
C22 H22 OBN sing 297 n n 
C23 O21 OBN sing 298 n n 
C23 O23 OBN doub 299 n n 
C1' C2' OBN sing 300 n n 
C1' O3 OBN sing 301 n n 
C1' O5' OBN sing 302 n n 
C1' H1' OBN sing 303 n n 
C2' C3' OBN sing 304 n n 
C2' O2' OBN sing 305 n n 
C2' H2' OBN sing 306 n n 
C3' C4' OBN sing 307 n n 
C3' O3' OBN sing 308 n n 
C3' H3' OBN sing 309 n n 
C4' C5' OBN sing 310 n n 
C4' O4' OBN sing 311 n n 
C4' H4' OBN sing 312 n n 
C5' C6' OBN sing 313 n n 
C5' O5' OBN sing 314 n n 
C5' H5' OBN sing 315 n n 
C6' "H6'1" OBN sing 316 n n 
C6' "H6'2" OBN sing 317 n n 
C6' "H6'3" OBN sing 318 n n 
O1 HO1 OBN sing 319 n n 
O5 HO5 OBN sing 320 n n 
O11 HOE OBN sing 321 n n 
O14 HOF OBN sing 322 n n 
O19 HON OBN sing 323 n n 
O2' HO2' OBN sing 324 n n 
O3' HO3' OBN sing 325 n n 
O4' HO4' OBN sing 326 n n 
#
_atom_sites.entry_id                     1IBG 
_atom_sites.fract_transf_matrix[1][1]    0.010677 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008327 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011797 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CU L 1 1 1 CU CU . 
D 4 OBN H 1 1 1 OBN OBN . 
E 5 HOH L 1 215 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OBN . . . D 4 6.971 11.837 41.951 1 34.68 ? C1 OBN 1 H 1 
HETATM 2 C C2 OBN . . . D 4 5.956 11.967 43.068 1 36.31 ? C2 OBN 1 H 1 
HETATM 3 C C3 OBN . . . D 4 5.424 10.621 43.544 1 39.19 ? C3 OBN 1 H 1 
HETATM 4 C C4 OBN . . . D 4 5.039 9.694 42.375 1 36.2 ? C4 OBN 1 H 1 
HETATM 5 C C5 OBN . . . D 4 5.952 9.664 41.111 1 33.07 ? C5 OBN 1 H 1 
HETATM 6 C C6 OBN . . . D 4 5.201 9.017 39.93 1 29.56 ? C6 OBN 1 H 1 
HETATM 7 C C7 OBN . . . D 4 3.869 9.732 39.706 1 26.13 ? C7 OBN 1 H 1 
HETATM 8 C C8 OBN . . . D 4 4.156 11.136 39.215 1 25.04 ? C8 OBN 1 H 1 
HETATM 9 C C9 OBN . . . D 4 4.977 11.961 40.221 1 29.76 ? C9 OBN 1 H 1 
HETATM 10 C C10 OBN . . . D 4 6.303 11.167 40.69 1 33.12 ? C10 OBN 1 H 1 
HETATM 11 C C11 OBN . . . D 4 5.137 13.402 39.633 1 27.87 ? C11 OBN 1 H 1 
HETATM 12 C C12 OBN . . . D 4 3.819 14.064 39.249 1 23.25 ? C12 OBN 1 H 1 
HETATM 13 C C13 OBN . . . D 4 3.065 13.3 38.165 1 22.74 ? C13 OBN 1 H 1 
HETATM 14 C C14 OBN . . . D 4 2.9 11.825 38.633 1 22.78 ? C14 OBN 1 H 1 
HETATM 15 C C15 OBN . . . D 4 1.705 11.933 39.561 1 21.7 ? C15 OBN 1 H 1 
HETATM 16 C C16 OBN . . . D 4 0.873 13.138 39.116 1 22.58 ? C16 OBN 1 H 1 
HETATM 17 C C17 OBN . . . D 4 1.648 13.87 38.043 1 21.94 ? C17 OBN 1 H 1 
HETATM 18 C C18 OBN . . . D 4 3.859 13.412 36.863 1 22.66 ? C18 OBN 1 H 1 
HETATM 19 C C19 OBN . . . D 4 7.371 11.037 39.568 1 33.16 ? C19 OBN 1 H 1 
HETATM 20 C C20 OBN . . . D 4 0.968 13.847 36.691 1 25.11 ? C20 OBN 1 H 1 
HETATM 21 C C21 OBN . . . D 4 0.909 15.02 35.767 1 26.1 ? C21 OBN 1 H 1 
HETATM 22 C C22 OBN . . . D 4 0.277 12.856 36.079 1 24.07 ? C22 OBN 1 H 1 
HETATM 23 C C23 OBN . . . D 4 -0.301 13.327 34.826 1 23.53 ? C23 OBN 1 H 1 
HETATM 24 C C1' OBN . . . D 4 5.748 8.991 45.353 1 54.97 ? C1' OBN 1 H 1 
HETATM 25 C C2' OBN . . . D 4 6.918 8.356 46.113 1 58.66 ? C2' OBN 1 H 1 
HETATM 26 C C3' OBN . . . D 4 7.665 9.474 46.885 1 59.52 ? C3' OBN 1 H 1 
HETATM 27 C C4' OBN . . . D 4 6.746 10.1 47.939 1 58.47 ? C4' OBN 1 H 1 
HETATM 28 C C5' OBN . . . D 4 5.356 10.459 47.376 1 58.83 ? C5' OBN 1 H 1 
HETATM 29 C C6' OBN . . . D 4 4.348 10.506 48.518 1 58.06 ? C6' OBN 1 H 1 
HETATM 30 O O1 OBN . . . D 4 8.127 11.092 42.391 1 37.99 ? O1 OBN 1 H 1 
HETATM 31 O O3 OBN . . . D 4 6.29 10.008 44.471 1 46.66 ? O3 OBN 1 H 1 
HETATM 32 O O5 OBN . . . D 4 7.116 8.812 41.382 1 30.46 ? O5 OBN 1 H 1 
HETATM 33 O O11 OBN . . . D 4 5.871 14.302 40.454 1 31.29 ? O11 OBN 1 H 1 
HETATM 34 O O14 OBN . . . D 4 2.433 11.051 37.519 1 23.48 ? O14 OBN 1 H 1 
HETATM 35 O O19 OBN . . . D 4 8.233 12.191 39.466 1 36.1 ? O19 OBN 1 H 1 
HETATM 36 O O21 OBN . . . D 4 0.012 14.614 34.691 1 24.82 ? O21 OBN 1 H 1 
HETATM 37 O O23 OBN . . . D 4 -1.019 12.769 33.996 1 21.83 ? O23 OBN 1 H 1 
HETATM 38 O O2' OBN . . . D 4 6.36 7.353 46.995 1 61.87 ? O2' OBN 1 H 1 
HETATM 39 O O3' OBN . . . D 4 8.921 9.067 47.478 1 59.91 ? O3' OBN 1 H 1 
HETATM 40 O O4' OBN . . . D 4 7.372 11.331 48.314 1 60.22 ? O4' OBN 1 H 1 
HETATM 41 O O5' OBN . . . D 4 4.858 9.494 46.394 1 57.36 ? O5' OBN 1 H 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           41 
#