data_1IBV
#
_model_server_result.job_id            bXtVjqup1dX7crXaJeHXvg 
_model_server_result.datetime_utc      '2024-10-19 02:19:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ibv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":801}' 
#
_entry.id    1IBV 
#
_exptl.entry_id    1IBV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              170.189 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HISTIDINE-METHYL-ESTER 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1IBV 
_cell.length_a            96.272 
_cell.length_b            115.48 
_cell.length_c            206.393 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 103.1965 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C PYR 1 B PYR 483 1_555 B N PHE 2 B PHE 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 B CA PYR 1 B PYR 483 1_555 G N PVH . B PVH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? 
covale ? covale3 D C PYR 1 D PYR 483 1_555 D N PHE 2 D PHE 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 D CA PYR 1 D PYR 483 1_555 H N PVH . D PVH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale5 F C PYR 1 F PYR 483 1_555 F N PHE 2 F PHE 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 F CA PYR 1 F PYR 483 1_555 I N PVH . F PVH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? 
#
_chem_comp.formula           'C7 H12 N3 O2 1' 
_chem_comp.formula_weight    170.189 
_chem_comp.id                PVH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              HISTIDINE-METHYL-ESTER 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA PVH sing 277 n n 
N H PVH sing 278 n n 
N H2 PVH sing 279 n n 
CA C PVH sing 280 n n 
CA CB PVH sing 281 n n 
CA HA PVH sing 282 n n 
C O PVH doub 283 n n 
C OXT PVH sing 284 n n 
CB CG PVH sing 285 n n 
CB HB2 PVH sing 286 n n 
CB HB3 PVH sing 287 n n 
CG ND1 PVH sing 288 n y 
CG CD2 PVH doub 289 n y 
ND1 CE1 PVH doub 290 n y 
ND1 HD1 PVH sing 291 n n 
CD2 NE2 PVH sing 292 n y 
CD2 HD2 PVH sing 293 n n 
CE1 NE2 PVH sing 294 n y 
CE1 HE1 PVH sing 295 n n 
NE2 HE2 PVH sing 296 n n 
OXT CM PVH sing 297 n n 
CM HM1 PVH sing 298 n n 
CM HM2 PVH sing 299 n n 
CM HM3 PVH sing 300 n n 
#
_atom_sites.entry_id                     1IBV 
_atom_sites.fract_transf_matrix[1][1]    0.010387 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00866 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 PVH B 1 801 482 PVH PVH . 
H 3 PVH D 1 801 482 PVH PVH . 
I 3 PVH F 1 801 482 PVH PVH . 
J 4 HOH A 1 101 93 HOH HOH . 
J 4 HOH A 2 102 89 HOH HOH . 
J 4 HOH A 3 103 84 HOH HOH . 
J 4 HOH A 4 104 86 HOH HOH . 
J 4 HOH A 5 105 92 HOH HOH . 
J 4 HOH A 6 106 88 HOH HOH . 
J 4 HOH A 7 107 95 HOH HOH . 
J 4 HOH A 8 108 94 HOH HOH . 
J 4 HOH A 9 109 87 HOH HOH . 
J 4 HOH A 10 110 83 HOH HOH . 
J 4 HOH A 11 111 85 HOH HOH . 
J 4 HOH A 12 112 91 HOH HOH . 
J 4 HOH A 13 113 82 HOH HOH . 
J 4 HOH A 14 114 90 HOH HOH . 
K 4 HOH B 1 901 493 HOH HOH . 
K 4 HOH B 2 902 494 HOH HOH . 
K 4 HOH B 3 903 488 HOH HOH . 
K 4 HOH B 4 904 495 HOH HOH . 
K 4 HOH B 5 905 486 HOH HOH . 
K 4 HOH B 6 906 491 HOH HOH . 
K 4 HOH B 7 907 489 HOH HOH . 
K 4 HOH B 8 908 490 HOH HOH . 
K 4 HOH B 9 909 492 HOH HOH . 
K 4 HOH B 10 910 483 HOH HOH . 
K 4 HOH B 11 911 487 HOH HOH . 
K 4 HOH B 12 912 485 HOH HOH . 
K 4 HOH B 13 913 484 HOH HOH . 
L 4 HOH C 1 101 91 HOH HOH . 
L 4 HOH C 2 102 84 HOH HOH . 
L 4 HOH C 3 103 96 HOH HOH . 
L 4 HOH C 4 104 82 HOH HOH . 
L 4 HOH C 5 105 85 HOH HOH . 
L 4 HOH C 6 106 88 HOH HOH . 
L 4 HOH C 7 107 83 HOH HOH . 
L 4 HOH C 8 108 95 HOH HOH . 
L 4 HOH C 9 109 86 HOH HOH . 
L 4 HOH C 10 110 93 HOH HOH . 
L 4 HOH C 11 111 98 HOH HOH . 
L 4 HOH C 12 112 94 HOH HOH . 
L 4 HOH C 13 113 90 HOH HOH . 
L 4 HOH C 14 114 89 HOH HOH . 
L 4 HOH C 15 115 92 HOH HOH . 
L 4 HOH C 16 116 87 HOH HOH . 
L 4 HOH C 17 117 97 HOH HOH . 
M 4 HOH D 1 901 495 HOH HOH . 
M 4 HOH D 2 902 488 HOH HOH . 
M 4 HOH D 3 903 493 HOH HOH . 
M 4 HOH D 4 904 487 HOH HOH . 
M 4 HOH D 5 905 496 HOH HOH . 
M 4 HOH D 6 906 498 HOH HOH . 
M 4 HOH D 7 907 492 HOH HOH . 
M 4 HOH D 8 908 483 HOH HOH . 
M 4 HOH D 9 909 490 HOH HOH . 
M 4 HOH D 10 910 491 HOH HOH . 
M 4 HOH D 11 911 485 HOH HOH . 
M 4 HOH D 12 912 497 HOH HOH . 
M 4 HOH D 13 913 484 HOH HOH . 
M 4 HOH D 14 914 486 HOH HOH . 
M 4 HOH D 15 915 489 HOH HOH . 
M 4 HOH D 16 916 501 HOH HOH . 
M 4 HOH D 17 917 494 HOH HOH . 
N 4 HOH E 1 101 90 HOH HOH . 
N 4 HOH E 2 102 94 HOH HOH . 
N 4 HOH E 3 103 96 HOH HOH . 
N 4 HOH E 4 104 92 HOH HOH . 
N 4 HOH E 5 105 82 HOH HOH . 
N 4 HOH E 6 106 97 HOH HOH . 
N 4 HOH E 7 107 87 HOH HOH . 
N 4 HOH E 8 108 106 HOH HOH . 
N 4 HOH E 9 109 86 HOH HOH . 
N 4 HOH E 10 110 95 HOH HOH . 
N 4 HOH E 11 111 107 HOH HOH . 
N 4 HOH E 12 112 91 HOH HOH . 
N 4 HOH E 13 113 99 HOH HOH . 
N 4 HOH E 14 114 98 HOH HOH . 
N 4 HOH E 15 115 104 HOH HOH . 
N 4 HOH E 16 116 88 HOH HOH . 
N 4 HOH E 17 117 93 HOH HOH . 
N 4 HOH E 18 118 84 HOH HOH . 
N 4 HOH E 19 119 83 HOH HOH . 
N 4 HOH E 20 120 105 HOH HOH . 
N 4 HOH E 21 121 85 HOH HOH . 
N 4 HOH E 22 122 100 HOH HOH . 
N 4 HOH E 23 123 103 HOH HOH . 
N 4 HOH E 24 124 89 HOH HOH . 
N 4 HOH E 25 125 101 HOH HOH . 
N 4 HOH E 26 126 102 HOH HOH . 
O 4 HOH F 1 901 500 HOH HOH . 
O 4 HOH F 2 902 495 HOH HOH . 
O 4 HOH F 3 903 492 HOH HOH . 
O 4 HOH F 4 904 503 HOH HOH . 
O 4 HOH F 5 905 490 HOH HOH . 
O 4 HOH F 6 906 493 HOH HOH . 
O 4 HOH F 7 907 496 HOH HOH . 
O 4 HOH F 8 908 497 HOH HOH . 
O 4 HOH F 9 909 494 HOH HOH . 
O 4 HOH F 10 910 484 HOH HOH . 
O 4 HOH F 11 911 491 HOH HOH . 
O 4 HOH F 12 912 483 HOH HOH . 
O 4 HOH F 13 913 504 HOH HOH . 
O 4 HOH F 14 914 499 HOH HOH . 
O 4 HOH F 15 915 488 HOH HOH . 
O 4 HOH F 16 916 487 HOH HOH . 
O 4 HOH F 17 917 486 HOH HOH . 
O 4 HOH F 18 918 498 HOH HOH . 
O 4 HOH F 19 919 502 HOH HOH . 
O 4 HOH F 20 920 485 HOH HOH . 
O 4 HOH F 21 921 489 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PVH . . . I 3 26.138 -0.994 66.874 1 31.5 ? N PVH 801 F 1 
HETATM 2 C CA PVH . . . I 3 26.492 -0.178 68.035 1 32.47 ? CA PVH 801 F 1 
HETATM 3 C C PVH . . . I 3 27.805 0.513 67.747 1 31.07 ? C PVH 801 F 1 
HETATM 4 O O PVH . . . I 3 28.762 -0.166 67.376 1 35.66 ? O PVH 801 F 1 
HETATM 5 C CB PVH . . . I 3 26.865 -1.109 69.209 1 32.82 ? CB PVH 801 F 1 
HETATM 6 C CG PVH . . . I 3 25.999 -2.321 69.41 1 32.4 ? CG PVH 801 F 1 
HETATM 7 N ND1 PVH . . . I 3 24.972 -2.361 70.325 1 30.57 ? ND1 PVH 801 F 1 
HETATM 8 C CD2 PVH . . . I 3 26.147 -3.591 68.958 1 32.7 ? CD2 PVH 801 F 1 
HETATM 9 C CE1 PVH . . . I 3 24.525 -3.602 70.437 1 25.83 ? CE1 PVH 801 F 1 
HETATM 10 N NE2 PVH . . . I 3 25.223 -4.362 69.62 1 29.4 ? NE2 PVH 801 F 1 
HETATM 11 O OXT PVH . . . I 3 27.928 1.875 67.665 1 29.76 ? OXT PVH 801 F 1 
HETATM 12 C CM PVH . . . I 3 27.296 2.737 68.658 1 30.82 ? CM PVH 801 F 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           12 
#