data_1IBW # _model_server_result.job_id VBDEYh59C7DcYBopHEo2Qg _model_server_result.datetime_utc '2024-10-24 04:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ibw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":482}' # _entry.id 1IBW # _exptl.entry_id 1IBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.189 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HISTIDINE-METHYL-ESTER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IBW _cell.length_a 97.017 _cell.length_b 117.768 _cell.length_c 205.789 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 102.8945 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 B PYR 82 1_555 B N PHE 2 B PHE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 B CA PYR 1 B PYR 82 1_555 G N PVH . B PVH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale3 D C PYR 1 D PYR 82 1_555 D N PHE 2 D PHE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 D CA PYR 1 D PYR 82 1_555 H N PVH . D PVH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale5 F C PYR 1 F PYR 82 1_555 F N PHE 2 F PHE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 F CA PYR 1 F PYR 82 1_555 I N PVH . F PVH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? # _chem_comp.formula 'C7 H12 N3 O2 1' _chem_comp.formula_weight 170.189 _chem_comp.id PVH _chem_comp.mon_nstd_flag n _chem_comp.name HISTIDINE-METHYL-ESTER _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PVH sing 275 n n N H PVH sing 276 n n N H2 PVH sing 277 n n CA C PVH sing 278 n n CA CB PVH sing 279 n n CA HA PVH sing 280 n n C O PVH doub 281 n n C OXT PVH sing 282 n n CB CG PVH sing 283 n n CB HB2 PVH sing 284 n n CB HB3 PVH sing 285 n n CG ND1 PVH sing 286 n y CG CD2 PVH doub 287 n y ND1 CE1 PVH doub 288 n y ND1 HD1 PVH sing 289 n n CD2 NE2 PVH sing 290 n y CD2 HD2 PVH sing 291 n n CE1 NE2 PVH sing 292 n y CE1 HE1 PVH sing 293 n n NE2 HE2 PVH sing 294 n n OXT CM PVH sing 295 n n CM HM1 PVH sing 296 n n CM HM2 PVH sing 297 n n CM HM3 PVH sing 298 n n # _atom_sites.entry_id 1IBW _atom_sites.fract_transf_matrix[1][1] 0.010307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 PVH B 1 482 482 PVH PVH . H 3 PVH D 1 482 482 PVH PVH . I 3 PVH F 1 482 482 PVH PVH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PVH . . . G 3 11.084 10.747 82.154 1 39.48 ? N PVH 482 B 1 HETATM 2 C CA PVH . . . G 3 12.551 10.887 82.203 1 39.42 ? CA PVH 482 B 1 HETATM 3 C C PVH . . . G 3 13.161 9.574 82.652 1 42.03 ? C PVH 482 B 1 HETATM 4 O O PVH . . . G 3 12.738 9.051 83.683 1 49.34 ? O PVH 482 B 1 HETATM 5 C CB PVH . . . G 3 12.916 11.826 83.363 1 37.36 ? CB PVH 482 B 1 HETATM 6 C CG PVH . . . G 3 12.177 13.123 83.417 1 36.33 ? CG PVH 482 B 1 HETATM 7 N ND1 PVH . . . G 3 12.683 14.289 82.875 1 39 ? ND1 PVH 482 B 1 HETATM 8 C CD2 PVH . . . G 3 11.079 13.482 84.11 1 36.72 ? CD2 PVH 482 B 1 HETATM 9 C CE1 PVH . . . G 3 11.933 15.308 83.245 1 37.43 ? CE1 PVH 482 B 1 HETATM 10 N NE2 PVH . . . G 3 10.951 14.848 83.994 1 35.77 ? NE2 PVH 482 B 1 HETATM 11 O OXT PVH . . . G 3 14.4 9.171 82.215 1 39.37 ? OXT PVH 482 B 1 HETATM 12 C CM PVH . . . G 3 14.639 8.862 80.818 1 40.93 ? CM PVH 482 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #