data_1IC1
#
_model_server_result.job_id            9vvFW3FoROOxZ6d-X6NrUQ 
_model_server_result.datetime_utc      '2024-12-23 06:34:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ic1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":312}' 
#
_entry.id    1IC1 
#
_exptl.entry_id    1IC1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.3 
_cell.angle_gamma         90 
_cell.entry_id            1IC1 
_cell.length_a            88 
_cell.length_b            42.2 
_cell.length_c            93 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IC1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F,G,H,K 1 1,2 
B,D,E,I,J,L 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 145.262161 0 87.773488 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG A 314 NAG 
2 n C NAG 2 C 2 NAG A 324 NAG 
2 n D NAG 1 D 1 NAG B 313 NAG 
2 n D NAG 2 D 2 NAG B 323 NAG 
2 n E NAG 1 E 1 NAG B 314 NAG 
2 n E NAG 2 E 2 NAG B 324 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 21 A CYS 21 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 A SG CYS 25 A CYS 25 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 108 A CYS 108 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf4 B SG CYS 21 B CYS 21 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 25 B CYS 25 1_555 B SG CYS 69 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf6 B SG CYS 108 B CYS 108 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 103 A ASN 103 1_555 F C1 NAG . A NAG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? 
covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 G C1 NAG . A NAG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 A ND2 ASN 156 A ASN 156 1_555 H C1 NAG . A NAG 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale4 A ND2 ASN 175 A ASN 175 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale5 B ND2 ASN 103 B ASN 103 1_555 I C1 NAG . B NAG 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? 
covale ? covale6 B ND2 ASN 118 B ASN 118 1_555 J C1 NAG . B NAG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale7 B ND2 ASN 156 B ASN 156 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale8 B ND2 ASN 175 B ASN 175 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? 
covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? 
covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1IC1 
_atom_sites.fract_transf_matrix[1][1]    0.011364 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003979 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011393 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 NAG A 1 311 311 NAG NAG . 
G 3 NAG A 1 312 312 NAG NAG . 
H 3 NAG A 1 313 313 NAG NAG . 
I 3 NAG B 1 311 311 NAG NAG . 
J 3 NAG B 1 312 312 NAG NAG . 
K 4 HOH A 1 401 401 HOH HOH . 
K 4 HOH A 2 402 402 HOH HOH . 
K 4 HOH A 3 403 403 HOH HOH . 
K 4 HOH A 4 404 404 HOH HOH . 
K 4 HOH A 5 406 406 HOH HOH . 
K 4 HOH A 6 407 407 HOH HOH . 
K 4 HOH A 7 408 408 HOH HOH . 
K 4 HOH A 8 410 410 HOH HOH . 
K 4 HOH A 9 411 411 HOH HOH . 
K 4 HOH A 10 412 412 HOH HOH . 
K 4 HOH A 11 413 413 HOH HOH . 
K 4 HOH A 12 414 414 HOH HOH . 
K 4 HOH A 13 415 415 HOH HOH . 
K 4 HOH A 14 416 416 HOH HOH . 
K 4 HOH A 15 418 418 HOH HOH . 
K 4 HOH A 16 419 419 HOH HOH . 
K 4 HOH A 17 421 421 HOH HOH . 
K 4 HOH A 18 423 423 HOH HOH . 
K 4 HOH A 19 424 424 HOH HOH . 
K 4 HOH A 20 425 425 HOH HOH . 
K 4 HOH A 21 426 426 HOH HOH . 
K 4 HOH A 22 427 427 HOH HOH . 
K 4 HOH A 23 428 428 HOH HOH . 
K 4 HOH A 24 431 431 HOH HOH . 
K 4 HOH A 25 432 432 HOH HOH . 
K 4 HOH A 26 435 435 HOH HOH . 
K 4 HOH A 27 438 438 HOH HOH . 
K 4 HOH A 28 440 440 HOH HOH . 
K 4 HOH A 29 443 443 HOH HOH . 
L 4 HOH B 1 405 405 HOH HOH . 
L 4 HOH B 2 409 409 HOH HOH . 
L 4 HOH B 3 417 417 HOH HOH . 
L 4 HOH B 4 420 420 HOH HOH . 
L 4 HOH B 5 422 422 HOH HOH . 
L 4 HOH B 6 429 429 HOH HOH . 
L 4 HOH B 7 430 430 HOH HOH . 
L 4 HOH B 8 433 433 HOH HOH . 
L 4 HOH B 9 434 434 HOH HOH . 
L 4 HOH B 10 436 436 HOH HOH . 
L 4 HOH B 11 437 437 HOH HOH . 
L 4 HOH B 12 439 439 HOH HOH . 
L 4 HOH B 13 441 441 HOH HOH . 
L 4 HOH B 14 442 442 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 3 5.695 19.429 7.859 1 50.92 ? C1 NAG 312 A 1 
HETATM 2 C C2 NAG . . . G 3 5.186 18.198 8.645 1 52.79 ? C2 NAG 312 A 1 
HETATM 3 C C3 NAG . . . G 3 4.263 18.639 9.778 1 52.65 ? C3 NAG 312 A 1 
HETATM 4 C C4 NAG . . . G 3 4.977 19.673 10.641 1 52.69 ? C4 NAG 312 A 1 
HETATM 5 C C5 NAG . . . G 3 5.233 20.867 9.718 1 54.22 ? C5 NAG 312 A 1 
HETATM 6 C C6 NAG . . . G 3 5.731 22.196 10.313 1 53.95 ? C6 NAG 312 A 1 
HETATM 7 C C7 NAG . . . G 3 5.109 16.451 6.97 1 57.17 ? C7 NAG 312 A 1 
HETATM 8 C C8 NAG . . . G 3 4.277 15.568 6.047 1 57.66 ? C8 NAG 312 A 1 
HETATM 9 N N2 NAG . . . G 3 4.456 17.32 7.744 1 55.43 ? N2 NAG 312 A 1 
HETATM 10 O O3 NAG . . . G 3 3.885 17.528 10.556 1 52.29 ? O3 NAG 312 A 1 
HETATM 11 O O4 NAG . . . G 3 4.166 20.021 11.749 1 51.24 ? O4 NAG 312 A 1 
HETATM 12 O O5 NAG . . . G 3 6.173 20.464 8.729 1 51.48 ? O5 NAG 312 A 1 
HETATM 13 O O6 NAG . . . G 3 7.09 22.145 10.714 1 56.89 ? O6 NAG 312 A 1 
HETATM 14 O O7 NAG . . . G 3 6.332 16.323 7.008 1 58.91 ? O7 NAG 312 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           1209 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           14 
#