data_1ICJ # _model_server_result.job_id p9kv8H9fCyNvE-6kcTYGSQ _model_server_result.datetime_utc '2024-11-07 12:54:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1icj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2001}' # _entry.id 1ICJ # _exptl.entry_id 1ICJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.6 _cell.angle_gamma 90 _cell.entry_id 1ICJ _cell.length_a 140.7 _cell.length_b 63.4 _cell.length_c 86.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ICJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 90 A CYS 90 1_555 D NI NI . A NI 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A NE2 HIS 132 A HIS 132 1_555 D NI NI . A NI 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 A NE2 HIS 136 A HIS 136 1_555 D NI NI . A NI 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc4 D NI NI . A NI 2001 1_555 L O HOH . A HOH 2032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc5 B SG CYS 90 B CYS 590 1_555 F NI NI . B NI 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc6 B NE2 HIS 132 B HIS 632 1_555 F NI NI . B NI 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc7 B NE2 HIS 136 B HIS 636 1_555 F NI NI . B NI 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc8 F NI NI . B NI 2001 1_555 M O HOH . B HOH 3037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc9 C SG CYS 90 C CYS 1090 1_555 J NI NI . C NI 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 C NE2 HIS 132 C HIS 1132 1_555 J NI NI . C NI 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc11 C NE2 HIS 136 C HIS 1136 1_555 J NI NI . C NI 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc12 J NI NI . C NI 2001 1_555 N O HOH . C HOH 2044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ICJ _atom_sites.fract_transf_matrix[1][1] 0.007107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NI A 1 2001 2001 NI NI . E 3 2PE A 1 2002 1 2PE PGO . F 2 NI B 1 2001 2001 NI NI . G 4 SO4 B 1 3001 3001 SO4 SO4 . H 4 SO4 B 1 3002 3002 SO4 SO4 . I 3 2PE B 1 3 3 2PE PGO . J 2 NI C 1 2001 2001 NI NI . K 3 2PE C 1 2 2 2PE PGO . L 5 HOH A 1 2004 2004 HOH HOH . L 5 HOH A 2 2005 2009 HOH HOH . L 5 HOH A 3 2006 2021 HOH HOH . L 5 HOH A 4 2007 2024 HOH HOH . L 5 HOH A 5 2008 2041 HOH HOH . L 5 HOH A 6 2009 2053 HOH HOH . L 5 HOH A 7 2010 2056 HOH HOH . L 5 HOH A 8 2011 2057 HOH HOH . L 5 HOH A 9 2012 2060 HOH HOH . L 5 HOH A 10 2013 2075 HOH HOH . L 5 HOH A 11 2014 2081 HOH HOH . L 5 HOH A 12 2015 2089 HOH HOH . L 5 HOH A 13 2016 2095 HOH HOH . L 5 HOH A 14 2017 2103 HOH HOH . L 5 HOH A 15 2018 2 HOH HOH . L 5 HOH A 16 2019 4 HOH HOH . L 5 HOH A 17 2020 37 HOH HOH . L 5 HOH A 18 2021 59 HOH HOH . L 5 HOH A 19 2022 64 HOH HOH . L 5 HOH A 20 2023 119 HOH HOH . L 5 HOH A 21 2024 127 HOH HOH . L 5 HOH A 22 2025 2002 HOH HOH . L 5 HOH A 23 2026 2003 HOH HOH . L 5 HOH A 24 2027 2004 HOH HOH . L 5 HOH A 25 2028 2005 HOH HOH . L 5 HOH A 26 2029 2006 HOH HOH . L 5 HOH A 27 2030 2007 HOH HOH . L 5 HOH A 28 2031 2008 HOH HOH . L 5 HOH A 29 2032 2009 HOH HOH . L 5 HOH A 30 2033 2010 HOH HOH . L 5 HOH A 31 2034 2011 HOH HOH . L 5 HOH A 32 2035 2012 HOH HOH . L 5 HOH A 33 2036 2013 HOH HOH . L 5 HOH A 34 2037 2015 HOH HOH . L 5 HOH A 35 2038 2017 HOH HOH . L 5 HOH A 36 2039 2018 HOH HOH . L 5 HOH A 37 2040 2019 HOH HOH . L 5 HOH A 38 2041 2020 HOH HOH . L 5 HOH A 39 2042 2021 HOH HOH . L 5 HOH A 40 2043 2025 HOH HOH . L 5 HOH A 41 2044 2028 HOH HOH . L 5 HOH A 42 2045 2029 HOH HOH . L 5 HOH A 43 2046 2030 HOH HOH . L 5 HOH A 44 2047 2031 HOH HOH . L 5 HOH A 45 2048 2033 HOH HOH . L 5 HOH A 46 2049 2034 HOH HOH . L 5 HOH A 47 2050 2036 HOH HOH . L 5 HOH A 48 2051 2037 HOH HOH . L 5 HOH A 49 2052 2041 HOH HOH . L 5 HOH A 50 2053 2055 HOH HOH . L 5 HOH A 51 2054 2062 HOH HOH . L 5 HOH A 52 2055 2069 HOH HOH . L 5 HOH A 53 2056 2070 HOH HOH . L 5 HOH A 54 2057 2073 HOH HOH . L 5 HOH A 55 2058 2081 HOH HOH . L 5 HOH A 56 2059 2096 HOH HOH . L 5 HOH A 57 2060 2097 HOH HOH . L 5 HOH A 58 2061 2100 HOH HOH . L 5 HOH A 59 2062 2102 HOH HOH . L 5 HOH A 60 2063 2108 HOH HOH . L 5 HOH A 61 2064 2110 HOH HOH . L 5 HOH A 62 2065 2113 HOH HOH . L 5 HOH A 63 2066 2125 HOH HOH . L 5 HOH A 64 2067 2128 HOH HOH . L 5 HOH A 65 2068 2131 HOH HOH . L 5 HOH A 66 2069 2139 HOH HOH . M 5 HOH B 1 3003 2005 HOH HOH . M 5 HOH B 2 3004 2023 HOH HOH . M 5 HOH B 3 3005 2026 HOH HOH . M 5 HOH B 4 3006 2027 HOH HOH . M 5 HOH B 5 3007 2033 HOH HOH . M 5 HOH B 6 3008 2038 HOH HOH . M 5 HOH B 7 3009 2045 HOH HOH . M 5 HOH B 8 3010 2049 HOH HOH . M 5 HOH B 9 3011 2055 HOH HOH . M 5 HOH B 10 3012 2063 HOH HOH . M 5 HOH B 11 3013 2064 HOH HOH . M 5 HOH B 12 3014 2065 HOH HOH . M 5 HOH B 13 3015 2070 HOH HOH . M 5 HOH B 14 3016 2074 HOH HOH . M 5 HOH B 15 3017 2083 HOH HOH . M 5 HOH B 16 3018 2094 HOH HOH . M 5 HOH B 17 3019 2112 HOH HOH . M 5 HOH B 18 3020 3 HOH HOH . M 5 HOH B 19 3021 8 HOH HOH . M 5 HOH B 20 3022 15 HOH HOH . M 5 HOH B 21 3023 28 HOH HOH . M 5 HOH B 22 3024 50 HOH HOH . M 5 HOH B 23 3025 58 HOH HOH . M 5 HOH B 24 3026 60 HOH HOH . M 5 HOH B 25 3027 121 HOH HOH . M 5 HOH B 26 3028 137 HOH HOH . M 5 HOH B 27 3029 2001 HOH HOH . M 5 HOH B 28 3030 2002 HOH HOH . M 5 HOH B 29 3031 2003 HOH HOH . M 5 HOH B 30 3032 2004 HOH HOH . M 5 HOH B 31 3033 2005 HOH HOH . M 5 HOH B 32 3034 2006 HOH HOH . M 5 HOH B 33 3035 2007 HOH HOH . M 5 HOH B 34 3036 2008 HOH HOH . M 5 HOH B 35 3037 2009 HOH HOH . M 5 HOH B 36 3038 2015 HOH HOH . M 5 HOH B 37 3039 2026 HOH HOH . M 5 HOH B 38 3040 2034 HOH HOH . M 5 HOH B 39 3041 2036 HOH HOH . M 5 HOH B 40 3042 2041 HOH HOH . M 5 HOH B 41 3043 2047 HOH HOH . M 5 HOH B 42 3044 2053 HOH HOH . M 5 HOH B 43 3045 2054 HOH HOH . M 5 HOH B 44 3046 2055 HOH HOH . M 5 HOH B 45 3047 2056 HOH HOH . M 5 HOH B 46 3048 2070 HOH HOH . M 5 HOH B 47 3049 2073 HOH HOH . M 5 HOH B 48 3050 2077 HOH HOH . M 5 HOH B 49 3051 2078 HOH HOH . M 5 HOH B 50 3052 2079 HOH HOH . M 5 HOH B 51 3053 2080 HOH HOH . M 5 HOH B 52 3054 2081 HOH HOH . M 5 HOH B 53 3055 2082 HOH HOH . M 5 HOH B 54 3056 2084 HOH HOH . M 5 HOH B 55 3057 2088 HOH HOH . M 5 HOH B 56 3058 2094 HOH HOH . M 5 HOH B 57 3059 2104 HOH HOH . M 5 HOH B 58 3060 2108 HOH HOH . M 5 HOH B 59 3061 2124 HOH HOH . M 5 HOH B 60 3062 2125 HOH HOH . M 5 HOH B 61 3063 2157 HOH HOH . M 5 HOH B 62 3064 2202 HOH HOH . M 5 HOH B 63 3065 2209 HOH HOH . M 5 HOH B 64 3066 2212 HOH HOH . M 5 HOH B 65 3067 2217 HOH HOH . M 5 HOH B 66 3068 2247 HOH HOH . M 5 HOH B 67 3069 2248 HOH HOH . M 5 HOH B 68 3070 2252 HOH HOH . N 5 HOH C 1 2012 2012 HOH HOH . N 5 HOH C 2 2013 2015 HOH HOH . N 5 HOH C 3 2014 2019 HOH HOH . N 5 HOH C 4 2015 2039 HOH HOH . N 5 HOH C 5 2016 2050 HOH HOH . N 5 HOH C 6 2017 2078 HOH HOH . N 5 HOH C 7 2018 2079 HOH HOH . N 5 HOH C 8 2019 2098 HOH HOH . N 5 HOH C 9 2020 2102 HOH HOH . N 5 HOH C 10 2021 6 HOH HOH . N 5 HOH C 11 2022 7 HOH HOH . N 5 HOH C 12 2023 13 HOH HOH . N 5 HOH C 13 2024 16 HOH HOH . N 5 HOH C 14 2025 19 HOH HOH . N 5 HOH C 15 2026 20 HOH HOH . N 5 HOH C 16 2027 41 HOH HOH . N 5 HOH C 17 2028 42 HOH HOH . N 5 HOH C 18 2029 56 HOH HOH . N 5 HOH C 19 2030 128 HOH HOH . N 5 HOH C 20 2031 145 HOH HOH . N 5 HOH C 21 2032 153 HOH HOH . N 5 HOH C 22 2033 157 HOH HOH . N 5 HOH C 23 2034 2207 HOH HOH . N 5 HOH C 24 2035 2208 HOH HOH . N 5 HOH C 25 2036 2210 HOH HOH . N 5 HOH C 26 2037 2211 HOH HOH . N 5 HOH C 27 2038 2002 HOH HOH . N 5 HOH C 28 2039 2003 HOH HOH . N 5 HOH C 29 2040 2004 HOH HOH . N 5 HOH C 30 2041 2005 HOH HOH . N 5 HOH C 31 2042 2007 HOH HOH . N 5 HOH C 32 2043 2008 HOH HOH . N 5 HOH C 33 2044 2009 HOH HOH . N 5 HOH C 34 2045 2011 HOH HOH . N 5 HOH C 35 2046 2015 HOH HOH . N 5 HOH C 36 2047 2018 HOH HOH . N 5 HOH C 37 2048 2019 HOH HOH . N 5 HOH C 38 2049 2020 HOH HOH . N 5 HOH C 39 2050 2021 HOH HOH . N 5 HOH C 40 2051 2032 HOH HOH . N 5 HOH C 41 2052 2034 HOH HOH . N 5 HOH C 42 2053 2037 HOH HOH . N 5 HOH C 43 2054 2039 HOH HOH . N 5 HOH C 44 2055 2041 HOH HOH . N 5 HOH C 45 2056 2042 HOH HOH . N 5 HOH C 46 2057 2046 HOH HOH . N 5 HOH C 47 2058 2048 HOH HOH . N 5 HOH C 48 2059 2054 HOH HOH . N 5 HOH C 49 2060 2055 HOH HOH . N 5 HOH C 50 2061 2056 HOH HOH . N 5 HOH C 51 2062 2058 HOH HOH . N 5 HOH C 52 2063 2060 HOH HOH . N 5 HOH C 53 2064 2068 HOH HOH . N 5 HOH C 54 2065 2069 HOH HOH . N 5 HOH C 55 2066 2070 HOH HOH . N 5 HOH C 56 2067 2073 HOH HOH . N 5 HOH C 57 2068 2078 HOH HOH . N 5 HOH C 58 2069 2081 HOH HOH . N 5 HOH C 59 2070 2083 HOH HOH . N 5 HOH C 60 2071 2084 HOH HOH . N 5 HOH C 61 2072 2087 HOH HOH . N 5 HOH C 62 2073 2093 HOH HOH . N 5 HOH C 63 2074 2097 HOH HOH . N 5 HOH C 64 2075 2108 HOH HOH . N 5 HOH C 65 2076 2115 HOH HOH . N 5 HOH C 66 2077 2128 HOH HOH . N 5 HOH C 67 2078 2140 HOH HOH . N 5 HOH C 68 2079 2153 HOH HOH . N 5 HOH C 69 2080 2204 HOH HOH . N 5 HOH C 70 2081 2205 HOH HOH . N 5 HOH C 71 2082 2232 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 63.147 _atom_site.Cartn_y 34.674 _atom_site.Cartn_z 43.497 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #