data_1ICU # _model_server_result.job_id sEJGWioS74PSiGDBpBIteA _model_server_result.datetime_utc '2024-11-08 03:43:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1icu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":220}' # _entry.id 1ICU # _exptl.entry_id 1ICU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.66 _cell.angle_gamma 90 _cell.entry_id 1ICU _cell.length_a 72.01 _cell.length_b 57.62 _cell.length_c 116.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ICU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 I N N ? 2 L N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1ICU _atom_sites.fract_transf_matrix[1][1] 0.013887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003375 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 218 218 FMN FMN . F 3 NIO A 1 221 219 NIO NIC . G 3 NIO B 1 219 219 NIO NIC . H 2 FMN B 1 220 218 FMN FMN . I 2 FMN C 1 222 218 FMN FMN . J 3 NIO C 1 225 219 NIO NIC . K 3 NIO D 1 223 219 NIO NIC . L 2 FMN D 1 224 218 FMN FMN . M 4 HOH A 1 222 4 HOH WAT . M 4 HOH A 2 223 9 HOH WAT . M 4 HOH A 3 224 10 HOH WAT . M 4 HOH A 4 225 20 HOH WAT . M 4 HOH A 5 226 25 HOH WAT . M 4 HOH A 6 227 27 HOH WAT . M 4 HOH A 7 228 29 HOH WAT . M 4 HOH A 8 229 31 HOH WAT . M 4 HOH A 9 230 32 HOH WAT . M 4 HOH A 10 231 37 HOH WAT . M 4 HOH A 11 232 38 HOH WAT . M 4 HOH A 12 233 39 HOH WAT . M 4 HOH A 13 234 41 HOH WAT . M 4 HOH A 14 235 43 HOH WAT . M 4 HOH A 15 236 47 HOH WAT . M 4 HOH A 16 237 53 HOH WAT . M 4 HOH A 17 238 57 HOH WAT . M 4 HOH A 18 239 61 HOH WAT . M 4 HOH A 19 240 64 HOH WAT . M 4 HOH A 20 241 66 HOH WAT . M 4 HOH A 21 242 68 HOH WAT . M 4 HOH A 22 243 70 HOH WAT . M 4 HOH A 23 244 73 HOH WAT . M 4 HOH A 24 245 80 HOH WAT . M 4 HOH A 25 246 81 HOH WAT . M 4 HOH A 26 247 83 HOH WAT . M 4 HOH A 27 248 85 HOH WAT . M 4 HOH A 28 249 91 HOH WAT . M 4 HOH A 29 250 109 HOH WAT . M 4 HOH A 30 251 110 HOH WAT . M 4 HOH A 31 252 114 HOH WAT . M 4 HOH A 32 253 124 HOH WAT . M 4 HOH A 33 254 131 HOH WAT . M 4 HOH A 34 255 137 HOH WAT . M 4 HOH A 35 256 138 HOH WAT . N 4 HOH B 1 221 1 HOH WAT . N 4 HOH B 2 222 2 HOH WAT . N 4 HOH B 3 223 3 HOH WAT . N 4 HOH B 4 224 5 HOH WAT . N 4 HOH B 5 225 6 HOH WAT . N 4 HOH B 6 226 7 HOH WAT . N 4 HOH B 7 227 11 HOH WAT . N 4 HOH B 8 228 12 HOH WAT . N 4 HOH B 9 229 13 HOH WAT . N 4 HOH B 10 230 18 HOH WAT . N 4 HOH B 11 231 23 HOH WAT . N 4 HOH B 12 232 34 HOH WAT . N 4 HOH B 13 233 40 HOH WAT . N 4 HOH B 14 234 46 HOH WAT . N 4 HOH B 15 235 48 HOH WAT . N 4 HOH B 16 236 49 HOH WAT . N 4 HOH B 17 237 60 HOH WAT . N 4 HOH B 18 238 62 HOH WAT . N 4 HOH B 19 239 67 HOH WAT . N 4 HOH B 20 240 71 HOH WAT . N 4 HOH B 21 241 72 HOH WAT . N 4 HOH B 22 242 74 HOH WAT . N 4 HOH B 23 243 84 HOH WAT . N 4 HOH B 24 244 86 HOH WAT . N 4 HOH B 25 245 87 HOH WAT . N 4 HOH B 26 246 88 HOH WAT . N 4 HOH B 27 247 89 HOH WAT . N 4 HOH B 28 248 92 HOH WAT . N 4 HOH B 29 249 93 HOH WAT . N 4 HOH B 30 250 94 HOH WAT . N 4 HOH B 31 251 99 HOH WAT . N 4 HOH B 32 252 100 HOH WAT . N 4 HOH B 33 253 111 HOH WAT . N 4 HOH B 34 254 112 HOH WAT . N 4 HOH B 35 255 121 HOH WAT . N 4 HOH B 36 256 122 HOH WAT . N 4 HOH B 37 257 123 HOH WAT . N 4 HOH B 38 258 126 HOH WAT . N 4 HOH B 39 259 130 HOH WAT . N 4 HOH B 40 260 134 HOH WAT . N 4 HOH B 41 261 135 HOH WAT . N 4 HOH B 42 262 139 HOH WAT . O 4 HOH C 1 226 8 HOH WAT . O 4 HOH C 2 227 14 HOH WAT . O 4 HOH C 3 228 15 HOH WAT . O 4 HOH C 4 229 16 HOH WAT . O 4 HOH C 5 230 21 HOH WAT . O 4 HOH C 6 231 26 HOH WAT . O 4 HOH C 7 232 28 HOH WAT . O 4 HOH C 8 233 33 HOH WAT . O 4 HOH C 9 234 42 HOH WAT . O 4 HOH C 10 235 45 HOH WAT . O 4 HOH C 11 236 50 HOH WAT . O 4 HOH C 12 237 51 HOH WAT . O 4 HOH C 13 238 54 HOH WAT . O 4 HOH C 14 239 55 HOH WAT . O 4 HOH C 15 240 56 HOH WAT . O 4 HOH C 16 241 58 HOH WAT . O 4 HOH C 17 242 69 HOH WAT . O 4 HOH C 18 243 76 HOH WAT . O 4 HOH C 19 244 77 HOH WAT . O 4 HOH C 20 245 79 HOH WAT . O 4 HOH C 21 246 82 HOH WAT . O 4 HOH C 22 247 95 HOH WAT . O 4 HOH C 23 248 96 HOH WAT . O 4 HOH C 24 249 97 HOH WAT . O 4 HOH C 25 250 104 HOH WAT . O 4 HOH C 26 251 113 HOH WAT . O 4 HOH C 27 252 115 HOH WAT . O 4 HOH C 28 253 116 HOH WAT . O 4 HOH C 29 254 117 HOH WAT . O 4 HOH C 30 255 119 HOH WAT . O 4 HOH C 31 256 128 HOH WAT . O 4 HOH C 32 257 132 HOH WAT . P 4 HOH D 1 225 17 HOH WAT . P 4 HOH D 2 226 19 HOH WAT . P 4 HOH D 3 227 22 HOH WAT . P 4 HOH D 4 228 24 HOH WAT . P 4 HOH D 5 229 30 HOH WAT . P 4 HOH D 6 230 35 HOH WAT . P 4 HOH D 7 231 36 HOH WAT . P 4 HOH D 8 232 44 HOH WAT . P 4 HOH D 9 233 52 HOH WAT . P 4 HOH D 10 234 59 HOH WAT . P 4 HOH D 11 235 63 HOH WAT . P 4 HOH D 12 236 65 HOH WAT . P 4 HOH D 13 237 75 HOH WAT . P 4 HOH D 14 238 78 HOH WAT . P 4 HOH D 15 239 90 HOH WAT . P 4 HOH D 16 240 98 HOH WAT . P 4 HOH D 17 241 101 HOH WAT . P 4 HOH D 18 242 102 HOH WAT . P 4 HOH D 19 243 103 HOH WAT . P 4 HOH D 20 244 105 HOH WAT . P 4 HOH D 21 245 106 HOH WAT . P 4 HOH D 22 246 107 HOH WAT . P 4 HOH D 23 247 108 HOH WAT . P 4 HOH D 24 248 118 HOH WAT . P 4 HOH D 25 249 120 HOH WAT . P 4 HOH D 26 250 125 HOH WAT . P 4 HOH D 27 251 127 HOH WAT . P 4 HOH D 28 252 129 HOH WAT . P 4 HOH D 29 253 133 HOH WAT . P 4 HOH D 30 254 136 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 2 2.895 24.315 76.072 1 37.14 ? N1 FMN 220 B 1 HETATM 2 C C2 FMN . . . H 2 3.305 24.156 77.405 1 39.38 ? C2 FMN 220 B 1 HETATM 3 O O2 FMN . . . H 2 2.673 24.503 78.326 1 40.85 ? O2 FMN 220 B 1 HETATM 4 N N3 FMN . . . H 2 4.609 23.51 77.574 1 37.37 ? N3 FMN 220 B 1 HETATM 5 C C4 FMN . . . H 2 5.424 23.06 76.556 1 38.17 ? C4 FMN 220 B 1 HETATM 6 O O4 FMN . . . H 2 6.539 22.513 76.692 1 36.92 ? O4 FMN 220 B 1 HETATM 7 C C4A FMN . . . H 2 4.954 23.229 75.158 1 37.43 ? C4A FMN 220 B 1 HETATM 8 N N5 FMN . . . H 2 5.548 22.978 74.001 1 36.55 ? N5 FMN 220 B 1 HETATM 9 C C5A FMN . . . H 2 5.213 22.91 72.666 1 37.26 ? C5A FMN 220 B 1 HETATM 10 C C6 FMN . . . H 2 5.754 22.023 71.624 1 36.36 ? C6 FMN 220 B 1 HETATM 11 C C7 FMN . . . H 2 5.078 21.804 70.388 1 35.74 ? C7 FMN 220 B 1 HETATM 12 C C7M FMN . . . H 2 5.68 20.892 69.338 1 36.16 ? C7M FMN 220 B 1 HETATM 13 C C8 FMN . . . H 2 3.788 22.463 70.123 1 36.12 ? C8 FMN 220 B 1 HETATM 14 C C8M FMN . . . H 2 2.968 22.312 68.863 1 33.61 ? C8M FMN 220 B 1 HETATM 15 C C9 FMN . . . H 2 3.235 23.316 71.101 1 34.63 ? C9 FMN 220 B 1 HETATM 16 C C9A FMN . . . H 2 3.845 23.534 72.421 1 36.06 ? C9A FMN 220 B 1 HETATM 17 N N10 FMN . . . H 2 3.245 24.06 73.613 1 36.52 ? N10 FMN 220 B 1 HETATM 18 C C10 FMN . . . H 2 3.622 23.916 75.013 1 37.18 ? C10 FMN 220 B 1 HETATM 19 C C1' FMN . . . H 2 1.893 24.825 73.505 1 36.84 ? C1' FMN 220 B 1 HETATM 20 C C2' FMN . . . H 2 1.961 26.122 72.706 1 35.92 ? C2' FMN 220 B 1 HETATM 21 O O2' FMN . . . H 2 2.517 27.265 73.463 1 38.3 ? O2' FMN 220 B 1 HETATM 22 C C3' FMN . . . H 2 0.583 26.274 71.923 1 35.79 ? C3' FMN 220 B 1 HETATM 23 O O3' FMN . . . H 2 0.302 25.204 70.926 1 36.83 ? O3' FMN 220 B 1 HETATM 24 C C4' FMN . . . H 2 0.365 27.6 71.179 1 35.44 ? C4' FMN 220 B 1 HETATM 25 O O4' FMN . . . H 2 0.59 28.769 72.092 1 37.13 ? O4' FMN 220 B 1 HETATM 26 C C5' FMN . . . H 2 -1 27.801 70.47 1 36.73 ? C5' FMN 220 B 1 HETATM 27 O O5' FMN . . . H 2 -1.995 27.717 71.525 1 35.72 ? O5' FMN 220 B 1 HETATM 28 P P FMN . . . H 2 -2.997 26.471 71.529 1 35.69 ? P FMN 220 B 1 HETATM 29 O O1P FMN . . . H 2 -3.83 26.727 72.749 1 35.12 ? O1P FMN 220 B 1 HETATM 30 O O2P FMN . . . H 2 -2.355 25.098 71.436 1 33.36 ? O2P FMN 220 B 1 HETATM 31 O O3P FMN . . . H 2 -3.871 26.719 70.261 1 37.37 ? O3P FMN 220 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #