data_1ID8 # _model_server_result.job_id 73B0gdBDd-MZ811K1qcj4Q _model_server_result.datetime_utc '2024-12-22 06:12:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1id8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":139}' # _entry.id 1ID8 # _exptl.entry_id 1ID8 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 358.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHORIC ACID MONO-[5-(5,6-DIMETHYL-BENZOIMIDAZOL-1-YL)-4-HYDROXY-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O7 _struct_conn.ptnr1_label_comp_id FOP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id FOP _struct_conn.ptnr1_auth_seq_id 138 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id P _struct_conn.ptnr2_label_comp_id DBI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DBI _struct_conn.ptnr2_auth_seq_id 139 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.587 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H19 N2 O7 P' _chem_comp.formula_weight 358.284 _chem_comp.id DBI _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHORIC ACID MONO-[5-(5,6-DIMETHYL-BENZOIMIDAZOL-1-YL)-4-HYDROXY-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIMETHYLBENZIMIDAZOLE-NUCLEOTIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P DBI doub 83 n n P O2P DBI sing 84 n n P O3' DBI sing 85 n n P O3P DBI sing 86 n n O2P HO2 DBI sing 87 n n O3' C3' DBI sing 88 n n O5' C5' DBI sing 89 n n O5' HO5 DBI sing 90 n n C5' C4' DBI sing 91 n n C5' "H5'1" DBI sing 92 n n C5' "H5'2" DBI sing 93 n n C4' O4' DBI sing 94 n n C4' C3' DBI sing 95 n n C4' H4' DBI sing 96 n n O4' C1' DBI sing 97 n n C1' N1 DBI sing 98 n n C1' C2' DBI sing 99 n n C1' H1' DBI sing 100 n n N1 C8 DBI sing 101 n y N1 C2 DBI sing 102 n y C8 C7 DBI doub 103 n y C8 C9 DBI sing 104 n y C7 C6 DBI sing 105 n y C7 H7 DBI sing 106 n n C6 C11 DBI sing 107 n n C6 C5 DBI doub 108 n y C11 H111 DBI sing 109 n n C11 H112 DBI sing 110 n n C11 H113 DBI sing 111 n n C10 C5 DBI sing 112 n n C10 H101 DBI sing 113 n n C10 H102 DBI sing 114 n n C10 H103 DBI sing 115 n n C5 C4 DBI sing 116 n y C4 C9 DBI doub 117 n y C4 H4 DBI sing 118 n n C9 N3 DBI sing 119 n y N3 C2 DBI doub 120 n y C2 H2 DBI sing 121 n n C2' O2' DBI sing 122 n n C2' C3' DBI sing 123 n n C2' H2' DBI sing 124 n n O2' HO21 DBI sing 125 n n C3' H3' DBI sing 126 n n O3P HO3 DBI sing 127 n n # _atom_sites.entry_id 1ID8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOP A 1 138 138 FOP FOP . C 3 DBI A 1 139 139 DBI DBI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P DBI . . . C 3 0.209 -16.172 -7.452 1 0 ? P DBI 139 A 1 HETATM 2 O O1P DBI . . . C 3 -0.181 -17.703 -7.503 1 0 ? O1P DBI 139 A 1 HETATM 3 O O2P DBI . . . C 3 1.259 -15.956 -6.291 1 0 ? O2P DBI 139 A 1 HETATM 4 O O3' DBI . . . C 3 -1.07 -15.271 -7.182 1 0 ? O3' DBI 139 A 1 HETATM 5 O O5' DBI . . . C 3 -4.211 -17.523 -6.534 1 0 ? O5' DBI 139 A 1 HETATM 6 C C5' DBI . . . C 3 -4.2 -16.26 -7.15 1 0 ? C5' DBI 139 A 1 HETATM 7 C C4' DBI . . . C 3 -3.337 -15.257 -6.376 1 0 ? C4' DBI 139 A 1 HETATM 8 O O4' DBI . . . C 3 -3.894 -15 -5.103 1 0 ? O4' DBI 139 A 1 HETATM 9 C C1' DBI . . . C 3 -2.863 -14.52 -4.261 1 0 ? C1' DBI 139 A 1 HETATM 10 N N1 DBI . . . C 3 -2.86 -13.057 -4.246 1 0 ? N1 DBI 139 A 1 HETATM 11 C C8 DBI . . . C 3 -3.169 -12.228 -3.173 1 0 ? C8 DBI 139 A 1 HETATM 12 C C7 DBI . . . C 3 -3.623 -12.468 -1.907 1 0 ? C7 DBI 139 A 1 HETATM 13 C C6 DBI . . . C 3 -3.763 -11.434 -0.974 1 0 ? C6 DBI 139 A 1 HETATM 14 C C11 DBI . . . C 3 -4.223 -11.758 0.418 1 0 ? C11 DBI 139 A 1 HETATM 15 C C10 DBI . . . C 3 -3.607 -8.944 -0.398 1 0 ? C10 DBI 139 A 1 HETATM 16 C C5 DBI . . . C 3 -3.48 -10.114 -1.357 1 0 ? C5 DBI 139 A 1 HETATM 17 C C4 DBI . . . C 3 -3.067 -9.877 -2.67 1 0 ? C4 DBI 139 A 1 HETATM 18 C C9 DBI . . . C 3 -2.896 -10.895 -3.567 1 0 ? C9 DBI 139 A 1 HETATM 19 N N3 DBI . . . C 3 -2.475 -10.938 -4.886 1 0 ? N3 DBI 139 A 1 HETATM 20 C C2 DBI . . . C 3 -2.465 -12.24 -5.238 1 0 ? C2 DBI 139 A 1 HETATM 21 C C2' DBI . . . C 3 -1.565 -15.188 -4.747 1 0 ? C2' DBI 139 A 1 HETATM 22 O O2' DBI . . . C 3 -0.437 -14.344 -4.701 1 0 ? O2' DBI 139 A 1 HETATM 23 C C3' DBI . . . C 3 -1.904 -15.721 -6.133 1 0 ? C3' DBI 139 A 1 HETATM 24 H "H5'1" DBI . . . C 3 -5.231 -15.912 -7.227 1 0 ? "H5'1" DBI 139 A 1 HETATM 25 H "H5'2" DBI . . . C 3 -3.805 -16.397 -8.157 1 0 ? "H5'2" DBI 139 A 1 HETATM 26 H H4' DBI . . . C 3 -3.335 -14.314 -6.921 1 0 ? H4' DBI 139 A 1 HETATM 27 H H1' DBI . . . C 3 -3.084 -14.88 -3.252 1 0 ? H1' DBI 139 A 1 HETATM 28 H H7 DBI . . . C 3 -3.9 -13.476 -1.649 1 0 ? H7 DBI 139 A 1 HETATM 29 H H111 DBI . . . C 3 -4.666 -12.752 0.475 1 0 ? H111 DBI 139 A 1 HETATM 30 H H112 DBI . . . C 3 -4.948 -11.036 0.788 1 0 ? H112 DBI 139 A 1 HETATM 31 H H113 DBI . . . C 3 -3.347 -11.734 1.061 1 0 ? H113 DBI 139 A 1 HETATM 32 H H101 DBI . . . C 3 -2.746 -8.893 0.27 1 0 ? H101 DBI 139 A 1 HETATM 33 H H102 DBI . . . C 3 -4.509 -8.99 0.21 1 0 ? H102 DBI 139 A 1 HETATM 34 H H103 DBI . . . C 3 -3.604 -7.99 -0.931 1 0 ? H103 DBI 139 A 1 HETATM 35 H H4 DBI . . . C 3 -2.869 -8.863 -2.965 1 0 ? H4 DBI 139 A 1 HETATM 36 H H2 DBI . . . C 3 -2.143 -12.576 -6.212 1 0 ? H2 DBI 139 A 1 HETATM 37 H H2' DBI . . . C 3 -1.337 -16.04 -4.101 1 0 ? H2' DBI 139 A 1 HETATM 38 H HO21 DBI . . . C 3 -0.261 -14.087 -3.801 1 0 ? HO21 DBI 139 A 1 HETATM 39 H H3' DBI . . . C 3 -1.884 -16.81 -6.101 1 0 ? H3' DBI 139 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 3282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #