data_1IE3 # _model_server_result.job_id 5hi8_tC5994icHu0T2HQAA _model_server_result.datetime_utc '2025-04-24 22:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ie3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":313}' # _entry.id 1IE3 # _exptl.entry_id 1IE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.76 _cell.angle_gamma 90 _cell.entry_id 1IE3 _cell.length_a 147.41 _cell.length_b 52.85 _cell.length_c 169.91 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1IE3 _atom_sites.fract_transf_matrix[1][1] 0.006784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 313 313 NAD NAD . F 2 NAD B 1 314 314 NAD NAD . G 2 NAD C 1 315 315 NAD NAD . H 3 PYR C 1 317 317 PYR PYR . I 2 NAD D 1 316 316 NAD NAD . J 4 HOH A 1 318 318 HOH HOH . J 4 HOH A 2 319 319 HOH HOH . J 4 HOH A 3 320 320 HOH HOH . J 4 HOH A 4 321 321 HOH HOH . J 4 HOH A 5 322 322 HOH HOH . J 4 HOH A 6 323 323 HOH HOH . J 4 HOH A 7 324 324 HOH HOH . J 4 HOH A 8 325 325 HOH HOH . J 4 HOH A 9 326 326 HOH HOH . J 4 HOH A 10 328 328 HOH HOH . J 4 HOH A 11 329 329 HOH HOH . J 4 HOH A 12 330 330 HOH HOH . J 4 HOH A 13 331 331 HOH HOH . J 4 HOH A 14 332 332 HOH HOH . J 4 HOH A 15 333 333 HOH HOH . J 4 HOH A 16 335 335 HOH HOH . J 4 HOH A 17 336 336 HOH HOH . J 4 HOH A 18 337 337 HOH HOH . J 4 HOH A 19 338 338 HOH HOH . J 4 HOH A 20 339 339 HOH HOH . J 4 HOH A 21 340 340 HOH HOH . J 4 HOH A 22 341 341 HOH HOH . J 4 HOH A 23 342 342 HOH HOH . J 4 HOH A 24 343 343 HOH HOH . J 4 HOH A 25 344 344 HOH HOH . J 4 HOH A 26 345 345 HOH HOH . J 4 HOH A 27 346 346 HOH HOH . J 4 HOH A 28 347 347 HOH HOH . J 4 HOH A 29 348 348 HOH HOH . J 4 HOH A 30 349 349 HOH HOH . J 4 HOH A 31 350 350 HOH HOH . J 4 HOH A 32 351 351 HOH HOH . J 4 HOH A 33 352 352 HOH HOH . J 4 HOH A 34 354 354 HOH HOH . J 4 HOH A 35 355 355 HOH HOH . J 4 HOH A 36 356 356 HOH HOH . J 4 HOH A 37 358 358 HOH HOH . J 4 HOH A 38 359 359 HOH HOH . J 4 HOH A 39 360 360 HOH HOH . J 4 HOH A 40 361 361 HOH HOH . J 4 HOH A 41 362 362 HOH HOH . J 4 HOH A 42 363 363 HOH HOH . J 4 HOH A 43 364 364 HOH HOH . J 4 HOH A 44 365 365 HOH HOH . J 4 HOH A 45 366 366 HOH HOH . J 4 HOH A 46 367 367 HOH HOH . J 4 HOH A 47 368 368 HOH HOH . J 4 HOH A 48 369 369 HOH HOH . J 4 HOH A 49 398 398 HOH HOH . J 4 HOH A 50 412 412 HOH HOH . K 4 HOH B 1 327 327 HOH HOH . K 4 HOH B 2 334 334 HOH HOH . K 4 HOH B 3 353 353 HOH HOH . K 4 HOH B 4 357 357 HOH HOH . K 4 HOH B 5 370 370 HOH HOH . K 4 HOH B 6 371 371 HOH HOH . K 4 HOH B 7 372 372 HOH HOH . K 4 HOH B 8 373 373 HOH HOH . K 4 HOH B 9 374 374 HOH HOH . K 4 HOH B 10 375 375 HOH HOH . K 4 HOH B 11 376 376 HOH HOH . K 4 HOH B 12 377 377 HOH HOH . K 4 HOH B 13 378 378 HOH HOH . K 4 HOH B 14 379 379 HOH HOH . K 4 HOH B 15 380 380 HOH HOH . K 4 HOH B 16 381 381 HOH HOH . K 4 HOH B 17 382 382 HOH HOH . K 4 HOH B 18 383 383 HOH HOH . K 4 HOH B 19 384 384 HOH HOH . K 4 HOH B 20 385 385 HOH HOH . K 4 HOH B 21 386 386 HOH HOH . K 4 HOH B 22 387 387 HOH HOH . K 4 HOH B 23 388 388 HOH HOH . K 4 HOH B 24 389 389 HOH HOH . K 4 HOH B 25 390 390 HOH HOH . K 4 HOH B 26 391 391 HOH HOH . K 4 HOH B 27 392 392 HOH HOH . K 4 HOH B 28 393 393 HOH HOH . K 4 HOH B 29 394 394 HOH HOH . K 4 HOH B 30 395 395 HOH HOH . K 4 HOH B 31 396 396 HOH HOH . K 4 HOH B 32 397 397 HOH HOH . K 4 HOH B 33 399 399 HOH HOH . K 4 HOH B 34 400 400 HOH HOH . K 4 HOH B 35 401 401 HOH HOH . K 4 HOH B 36 402 402 HOH HOH . K 4 HOH B 37 403 403 HOH HOH . K 4 HOH B 38 404 404 HOH HOH . K 4 HOH B 39 405 405 HOH HOH . K 4 HOH B 40 406 406 HOH HOH . K 4 HOH B 41 407 407 HOH HOH . K 4 HOH B 42 408 408 HOH HOH . K 4 HOH B 43 409 409 HOH HOH . K 4 HOH B 44 410 410 HOH HOH . K 4 HOH B 45 411 411 HOH HOH . K 4 HOH B 46 413 413 HOH HOH . K 4 HOH B 47 414 414 HOH HOH . K 4 HOH B 48 415 415 HOH HOH . K 4 HOH B 49 416 416 HOH HOH . K 4 HOH B 50 417 417 HOH HOH . K 4 HOH B 51 418 418 HOH HOH . K 4 HOH B 52 419 419 HOH HOH . K 4 HOH B 53 420 420 HOH HOH . K 4 HOH B 54 421 421 HOH HOH . K 4 HOH B 55 422 422 HOH HOH . K 4 HOH B 56 423 423 HOH HOH . L 4 HOH C 1 425 425 HOH HOH . L 4 HOH C 2 426 426 HOH HOH . L 4 HOH C 3 427 427 HOH HOH . L 4 HOH C 4 428 428 HOH HOH . L 4 HOH C 5 429 429 HOH HOH . L 4 HOH C 6 430 430 HOH HOH . L 4 HOH C 7 431 431 HOH HOH . L 4 HOH C 8 432 432 HOH HOH . L 4 HOH C 9 433 433 HOH HOH . L 4 HOH C 10 434 434 HOH HOH . L 4 HOH C 11 435 435 HOH HOH . L 4 HOH C 12 437 437 HOH HOH . L 4 HOH C 13 438 438 HOH HOH . L 4 HOH C 14 439 439 HOH HOH . L 4 HOH C 15 440 440 HOH HOH . L 4 HOH C 16 441 441 HOH HOH . L 4 HOH C 17 442 442 HOH HOH . L 4 HOH C 18 443 443 HOH HOH . L 4 HOH C 19 444 444 HOH HOH . L 4 HOH C 20 445 445 HOH HOH . L 4 HOH C 21 446 446 HOH HOH . L 4 HOH C 22 447 447 HOH HOH . L 4 HOH C 23 448 448 HOH HOH . L 4 HOH C 24 449 449 HOH HOH . L 4 HOH C 25 450 450 HOH HOH . L 4 HOH C 26 452 452 HOH HOH . L 4 HOH C 27 453 453 HOH HOH . L 4 HOH C 28 454 454 HOH HOH . L 4 HOH C 29 455 455 HOH HOH . L 4 HOH C 30 456 456 HOH HOH . L 4 HOH C 31 458 458 HOH HOH . L 4 HOH C 32 459 459 HOH HOH . L 4 HOH C 33 460 460 HOH HOH . L 4 HOH C 34 461 461 HOH HOH . L 4 HOH C 35 467 467 HOH HOH . M 4 HOH D 1 424 424 HOH HOH . M 4 HOH D 2 436 436 HOH HOH . M 4 HOH D 3 451 451 HOH HOH . M 4 HOH D 4 457 457 HOH HOH . M 4 HOH D 5 462 462 HOH HOH . M 4 HOH D 6 463 463 HOH HOH . M 4 HOH D 7 464 464 HOH HOH . M 4 HOH D 8 465 465 HOH HOH . M 4 HOH D 9 466 466 HOH HOH . M 4 HOH D 10 468 468 HOH HOH . M 4 HOH D 11 469 469 HOH HOH . M 4 HOH D 12 470 470 HOH HOH . M 4 HOH D 13 471 471 HOH HOH . M 4 HOH D 14 472 472 HOH HOH . M 4 HOH D 15 473 473 HOH HOH . M 4 HOH D 16 474 474 HOH HOH . M 4 HOH D 17 475 475 HOH HOH . M 4 HOH D 18 476 476 HOH HOH . M 4 HOH D 19 477 477 HOH HOH . M 4 HOH D 20 478 478 HOH HOH . M 4 HOH D 21 479 479 HOH HOH . M 4 HOH D 22 480 480 HOH HOH . M 4 HOH D 23 481 481 HOH HOH . M 4 HOH D 24 482 482 HOH HOH . M 4 HOH D 25 483 483 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 12.787 -7.843 72.534 1 37.21 ? PA NAD 313 A 1 HETATM 2 O O1A NAD . . . E 2 12.348 -8.208 73.902 1 39.46 ? O1A NAD 313 A 1 HETATM 3 O O2A NAD . . . E 2 13.953 -8.587 71.981 1 35.96 ? O2A NAD 313 A 1 HETATM 4 O O5B NAD . . . E 2 13.096 -6.28 72.446 1 37.42 ? O5B NAD 313 A 1 HETATM 5 C C5B NAD . . . E 2 12.263 -5.346 73.166 1 33.49 ? C5B NAD 313 A 1 HETATM 6 C C4B NAD . . . E 2 13.138 -4.242 73.712 1 40.03 ? C4B NAD 313 A 1 HETATM 7 O O4B NAD . . . E 2 12.253 -3.349 74.414 1 40.45 ? O4B NAD 313 A 1 HETATM 8 C C3B NAD . . . E 2 14.174 -4.707 74.749 1 46.78 ? C3B NAD 313 A 1 HETATM 9 O O3B NAD . . . E 2 15.504 -4.427 74.28 1 47.78 ? O3B NAD 313 A 1 HETATM 10 C C2B NAD . . . E 2 13.714 -3.972 76.01 1 42.84 ? C2B NAD 313 A 1 HETATM 11 O O2B NAD . . . E 2 14.815 -3.639 76.889 1 49.42 ? O2B NAD 313 A 1 HETATM 12 C C1B NAD . . . E 2 13.001 -2.775 75.42 1 41.89 ? C1B NAD 313 A 1 HETATM 13 N N9A NAD . . . E 2 12.083 -2.078 76.331 1 46.85 ? N9A NAD 313 A 1 HETATM 14 C C8A NAD . . . E 2 11.261 -2.628 77.278 1 36.63 ? C8A NAD 313 A 1 HETATM 15 N N7A NAD . . . E 2 10.552 -1.727 77.961 1 38.47 ? N7A NAD 313 A 1 HETATM 16 C C5A NAD . . . E 2 10.938 -0.518 77.42 1 25.91 ? C5A NAD 313 A 1 HETATM 17 C C6A NAD . . . E 2 10.543 0.799 77.725 1 37.18 ? C6A NAD 313 A 1 HETATM 18 N N6A NAD . . . E 2 9.668 1.153 78.653 1 36.44 ? N6A NAD 313 A 1 HETATM 19 N N1A NAD . . . E 2 11.117 1.821 76.995 1 35.3 ? N1A NAD 313 A 1 HETATM 20 C C2A NAD . . . E 2 12.034 1.469 76.025 1 32.88 ? C2A NAD 313 A 1 HETATM 21 N N3A NAD . . . E 2 12.477 0.277 75.661 1 30.46 ? N3A NAD 313 A 1 HETATM 22 C C4A NAD . . . E 2 11.881 -0.698 76.409 1 32.93 ? C4A NAD 313 A 1 HETATM 23 O O3 NAD . . . E 2 11.58 -7.988 71.592 1 44.97 ? O3 NAD 313 A 1 HETATM 24 P PN NAD . . . E 2 11.406 -7.746 69.997 1 31.08 ? PN NAD 313 A 1 HETATM 25 O O1N NAD . . . E 2 11.587 -9.065 69.373 1 37.53 ? O1N NAD 313 A 1 HETATM 26 O O2N NAD . . . E 2 12.414 -6.737 69.594 1 30.74 ? O2N NAD 313 A 1 HETATM 27 O O5D NAD . . . E 2 9.868 -7.302 70.037 1 61.31 ? O5D NAD 313 A 1 HETATM 28 C C5D NAD . . . E 2 9.541 -5.942 69.688 1 58.79 ? C5D NAD 313 A 1 HETATM 29 C C4D NAD . . . E 2 8.032 -5.703 69.768 1 46.89 ? C4D NAD 313 A 1 HETATM 30 O O4D NAD . . . E 2 7.544 -5.675 68.383 1 48.37 ? O4D NAD 313 A 1 HETATM 31 C C3D NAD . . . E 2 7.166 -6.758 70.469 1 45.15 ? C3D NAD 313 A 1 HETATM 32 O O3D NAD . . . E 2 6.079 -6.121 71.161 1 40.97 ? O3D NAD 313 A 1 HETATM 33 C C2D NAD . . . E 2 6.676 -7.613 69.302 1 47.88 ? C2D NAD 313 A 1 HETATM 34 O O2D NAD . . . E 2 5.444 -8.286 69.629 1 50.1 ? O2D NAD 313 A 1 HETATM 35 C C1D NAD . . . E 2 6.49 -6.588 68.216 1 44.28 ? C1D NAD 313 A 1 HETATM 36 N N1N NAD . . . E 2 6.515 -7.157 66.858 0.5 28.07 ? N1N NAD 313 A 1 HETATM 37 C C2N NAD . . . E 2 5.925 -6.464 65.803 0.5 34.23 ? C2N NAD 313 A 1 HETATM 38 C C3N NAD . . . E 2 5.832 -7.048 64.43 0.5 32.76 ? C3N NAD 313 A 1 HETATM 39 C C7N NAD . . . E 2 5.119 -6.251 63.408 0.5 31.22 ? C7N NAD 313 A 1 HETATM 40 O O7N NAD . . . E 2 5.037 -6.744 62.272 0.5 27.43 ? O7N NAD 313 A 1 HETATM 41 N N7N NAD . . . E 2 4.573 -5.045 63.649 1 30.31 ? N7N NAD 313 A 1 HETATM 42 C C4N NAD . . . E 2 6.527 -8.369 64.15 0.5 33.09 ? C4N NAD 313 A 1 HETATM 43 C C5N NAD . . . E 2 7.149 -8.961 65.37 0.5 28.67 ? C5N NAD 313 A 1 HETATM 44 C C6N NAD . . . E 2 7.134 -8.427 66.581 0.5 33.32 ? C6N NAD 313 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #