data_1IE3 # _model_server_result.job_id hxcGc_WO7-mCaSLp42DOOg _model_server_result.datetime_utc '2025-07-02 22:31:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ie3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":317}' # _entry.id 1IE3 # _exptl.entry_id 1IE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.76 _cell.angle_gamma 90 _cell.entry_id 1IE3 _cell.length_a 147.41 _cell.length_b 52.85 _cell.length_c 169.91 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 352 n n C OXT PYR sing 353 n n C CA PYR sing 354 n n OXT HXT PYR sing 355 n n CA O3 PYR doub 356 n n CA CB PYR sing 357 n n CB HB1 PYR sing 358 n n CB HB2 PYR sing 359 n n CB HB3 PYR sing 360 n n # _atom_sites.entry_id 1IE3 _atom_sites.fract_transf_matrix[1][1] 0.006784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 313 313 NAD NAD . F 2 NAD B 1 314 314 NAD NAD . G 2 NAD C 1 315 315 NAD NAD . H 3 PYR C 1 317 317 PYR PYR . I 2 NAD D 1 316 316 NAD NAD . J 4 HOH A 1 318 318 HOH HOH . J 4 HOH A 2 319 319 HOH HOH . J 4 HOH A 3 320 320 HOH HOH . J 4 HOH A 4 321 321 HOH HOH . J 4 HOH A 5 322 322 HOH HOH . J 4 HOH A 6 323 323 HOH HOH . J 4 HOH A 7 324 324 HOH HOH . J 4 HOH A 8 325 325 HOH HOH . J 4 HOH A 9 326 326 HOH HOH . J 4 HOH A 10 328 328 HOH HOH . J 4 HOH A 11 329 329 HOH HOH . J 4 HOH A 12 330 330 HOH HOH . J 4 HOH A 13 331 331 HOH HOH . J 4 HOH A 14 332 332 HOH HOH . J 4 HOH A 15 333 333 HOH HOH . J 4 HOH A 16 335 335 HOH HOH . J 4 HOH A 17 336 336 HOH HOH . J 4 HOH A 18 337 337 HOH HOH . J 4 HOH A 19 338 338 HOH HOH . J 4 HOH A 20 339 339 HOH HOH . J 4 HOH A 21 340 340 HOH HOH . J 4 HOH A 22 341 341 HOH HOH . J 4 HOH A 23 342 342 HOH HOH . J 4 HOH A 24 343 343 HOH HOH . J 4 HOH A 25 344 344 HOH HOH . J 4 HOH A 26 345 345 HOH HOH . J 4 HOH A 27 346 346 HOH HOH . J 4 HOH A 28 347 347 HOH HOH . J 4 HOH A 29 348 348 HOH HOH . J 4 HOH A 30 349 349 HOH HOH . J 4 HOH A 31 350 350 HOH HOH . J 4 HOH A 32 351 351 HOH HOH . J 4 HOH A 33 352 352 HOH HOH . J 4 HOH A 34 354 354 HOH HOH . J 4 HOH A 35 355 355 HOH HOH . J 4 HOH A 36 356 356 HOH HOH . J 4 HOH A 37 358 358 HOH HOH . J 4 HOH A 38 359 359 HOH HOH . J 4 HOH A 39 360 360 HOH HOH . J 4 HOH A 40 361 361 HOH HOH . J 4 HOH A 41 362 362 HOH HOH . J 4 HOH A 42 363 363 HOH HOH . J 4 HOH A 43 364 364 HOH HOH . J 4 HOH A 44 365 365 HOH HOH . J 4 HOH A 45 366 366 HOH HOH . J 4 HOH A 46 367 367 HOH HOH . J 4 HOH A 47 368 368 HOH HOH . J 4 HOH A 48 369 369 HOH HOH . J 4 HOH A 49 398 398 HOH HOH . J 4 HOH A 50 412 412 HOH HOH . K 4 HOH B 1 327 327 HOH HOH . K 4 HOH B 2 334 334 HOH HOH . K 4 HOH B 3 353 353 HOH HOH . K 4 HOH B 4 357 357 HOH HOH . K 4 HOH B 5 370 370 HOH HOH . K 4 HOH B 6 371 371 HOH HOH . K 4 HOH B 7 372 372 HOH HOH . K 4 HOH B 8 373 373 HOH HOH . K 4 HOH B 9 374 374 HOH HOH . K 4 HOH B 10 375 375 HOH HOH . K 4 HOH B 11 376 376 HOH HOH . K 4 HOH B 12 377 377 HOH HOH . K 4 HOH B 13 378 378 HOH HOH . K 4 HOH B 14 379 379 HOH HOH . K 4 HOH B 15 380 380 HOH HOH . K 4 HOH B 16 381 381 HOH HOH . K 4 HOH B 17 382 382 HOH HOH . K 4 HOH B 18 383 383 HOH HOH . K 4 HOH B 19 384 384 HOH HOH . K 4 HOH B 20 385 385 HOH HOH . K 4 HOH B 21 386 386 HOH HOH . K 4 HOH B 22 387 387 HOH HOH . K 4 HOH B 23 388 388 HOH HOH . K 4 HOH B 24 389 389 HOH HOH . K 4 HOH B 25 390 390 HOH HOH . K 4 HOH B 26 391 391 HOH HOH . K 4 HOH B 27 392 392 HOH HOH . K 4 HOH B 28 393 393 HOH HOH . K 4 HOH B 29 394 394 HOH HOH . K 4 HOH B 30 395 395 HOH HOH . K 4 HOH B 31 396 396 HOH HOH . K 4 HOH B 32 397 397 HOH HOH . K 4 HOH B 33 399 399 HOH HOH . K 4 HOH B 34 400 400 HOH HOH . K 4 HOH B 35 401 401 HOH HOH . K 4 HOH B 36 402 402 HOH HOH . K 4 HOH B 37 403 403 HOH HOH . K 4 HOH B 38 404 404 HOH HOH . K 4 HOH B 39 405 405 HOH HOH . K 4 HOH B 40 406 406 HOH HOH . K 4 HOH B 41 407 407 HOH HOH . K 4 HOH B 42 408 408 HOH HOH . K 4 HOH B 43 409 409 HOH HOH . K 4 HOH B 44 410 410 HOH HOH . K 4 HOH B 45 411 411 HOH HOH . K 4 HOH B 46 413 413 HOH HOH . K 4 HOH B 47 414 414 HOH HOH . K 4 HOH B 48 415 415 HOH HOH . K 4 HOH B 49 416 416 HOH HOH . K 4 HOH B 50 417 417 HOH HOH . K 4 HOH B 51 418 418 HOH HOH . K 4 HOH B 52 419 419 HOH HOH . K 4 HOH B 53 420 420 HOH HOH . K 4 HOH B 54 421 421 HOH HOH . K 4 HOH B 55 422 422 HOH HOH . K 4 HOH B 56 423 423 HOH HOH . L 4 HOH C 1 425 425 HOH HOH . L 4 HOH C 2 426 426 HOH HOH . L 4 HOH C 3 427 427 HOH HOH . L 4 HOH C 4 428 428 HOH HOH . L 4 HOH C 5 429 429 HOH HOH . L 4 HOH C 6 430 430 HOH HOH . L 4 HOH C 7 431 431 HOH HOH . L 4 HOH C 8 432 432 HOH HOH . L 4 HOH C 9 433 433 HOH HOH . L 4 HOH C 10 434 434 HOH HOH . L 4 HOH C 11 435 435 HOH HOH . L 4 HOH C 12 437 437 HOH HOH . L 4 HOH C 13 438 438 HOH HOH . L 4 HOH C 14 439 439 HOH HOH . L 4 HOH C 15 440 440 HOH HOH . L 4 HOH C 16 441 441 HOH HOH . L 4 HOH C 17 442 442 HOH HOH . L 4 HOH C 18 443 443 HOH HOH . L 4 HOH C 19 444 444 HOH HOH . L 4 HOH C 20 445 445 HOH HOH . L 4 HOH C 21 446 446 HOH HOH . L 4 HOH C 22 447 447 HOH HOH . L 4 HOH C 23 448 448 HOH HOH . L 4 HOH C 24 449 449 HOH HOH . L 4 HOH C 25 450 450 HOH HOH . L 4 HOH C 26 452 452 HOH HOH . L 4 HOH C 27 453 453 HOH HOH . L 4 HOH C 28 454 454 HOH HOH . L 4 HOH C 29 455 455 HOH HOH . L 4 HOH C 30 456 456 HOH HOH . L 4 HOH C 31 458 458 HOH HOH . L 4 HOH C 32 459 459 HOH HOH . L 4 HOH C 33 460 460 HOH HOH . L 4 HOH C 34 461 461 HOH HOH . L 4 HOH C 35 467 467 HOH HOH . M 4 HOH D 1 424 424 HOH HOH . M 4 HOH D 2 436 436 HOH HOH . M 4 HOH D 3 451 451 HOH HOH . M 4 HOH D 4 457 457 HOH HOH . M 4 HOH D 5 462 462 HOH HOH . M 4 HOH D 6 463 463 HOH HOH . M 4 HOH D 7 464 464 HOH HOH . M 4 HOH D 8 465 465 HOH HOH . M 4 HOH D 9 466 466 HOH HOH . M 4 HOH D 10 468 468 HOH HOH . M 4 HOH D 11 469 469 HOH HOH . M 4 HOH D 12 470 470 HOH HOH . M 4 HOH D 13 471 471 HOH HOH . M 4 HOH D 14 472 472 HOH HOH . M 4 HOH D 15 473 473 HOH HOH . M 4 HOH D 16 474 474 HOH HOH . M 4 HOH D 17 475 475 HOH HOH . M 4 HOH D 18 476 476 HOH HOH . M 4 HOH D 19 477 477 HOH HOH . M 4 HOH D 20 478 478 HOH HOH . M 4 HOH D 21 479 479 HOH HOH . M 4 HOH D 22 480 480 HOH HOH . M 4 HOH D 23 481 481 HOH HOH . M 4 HOH D 24 482 482 HOH HOH . M 4 HOH D 25 483 483 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . H 3 55.38 -0.675 16.356 1 101.04 ? C PYR 317 C 1 HETATM 2 O O PYR . . . H 3 56.42 0.015 16.22 1 100.85 ? O PYR 317 C 1 HETATM 3 O OXT PYR . . . H 3 54.983 -1.423 15.43 1 101.04 ? OXT PYR 317 C 1 HETATM 4 C CA PYR . . . H 3 54.625 -0.615 17.591 1 101.04 ? CA PYR 317 C 1 HETATM 5 O O3 PYR . . . H 3 54.016 0.426 17.931 1 99.06 ? O3 PYR 317 C 1 HETATM 6 C CB PYR . . . H 3 54.604 -1.806 18.421 1 91.63 ? CB PYR 317 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 467 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #