data_1IEB # _model_server_result.job_id 1C6bLrEsdQ0sroTpbM9m6g _model_server_result.datetime_utc '2024-11-17 20:37:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ieb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":193}' # _entry.id 1IEB # _exptl.entry_id 1IEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IEB _cell.length_a 77.53 _cell.length_b 77.53 _cell.length_c 319.48 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,L,M 1 1 C,D,H,I,J,K,N,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 44 B CYS 15 1_555 B SG CYS 108 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 146 B CYS 117 1_555 B SG CYS 202 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 C SG CYS 107 C CYS 107 1_555 C SG CYS 163 C CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 44 D CYS 15 1_555 D SG CYS 108 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 D SG CYS 146 D CYS 117 1_555 D SG CYS 202 D CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 E C1 NAG . A NAG 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 F C1 NAG . A NAG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale3 B ND2 ASN 48 B ASN 19 1_555 G C1 NAG . B NAG 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 C ND2 ASN 78 C ASN 78 1_555 H C1 NAG . C NAG 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 C ND2 ASN 118 C ASN 118 1_555 I C1 NAG . C NAG 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale6 D ND2 ASN 48 D ASN 19 1_555 J C1 NAG . D NAG 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1IEB _atom_sites.fract_transf_matrix[1][1] 0.012898 _atom_sites.fract_transf_matrix[1][2] 0.007447 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 193 1 NAG NAG . F 3 NAG A 1 194 2 NAG NAG . G 3 NAG B 1 199 3 NAG NAG . H 3 NAG C 1 193 4 NAG NAG . I 3 NAG C 1 194 5 NAG NAG . J 3 NAG D 1 199 6 NAG NAG . K 4 SO4 D 1 200 1 SO4 SO4 . L 5 HOH A 1 195 2 HOH HOH . L 5 HOH A 2 196 6 HOH HOH . L 5 HOH A 3 197 11 HOH HOH . L 5 HOH A 4 198 13 HOH HOH . L 5 HOH A 5 199 20 HOH HOH . L 5 HOH A 6 200 21 HOH HOH . L 5 HOH A 7 201 28 HOH HOH . L 5 HOH A 8 202 29 HOH HOH . L 5 HOH A 9 203 30 HOH HOH . L 5 HOH A 10 204 31 HOH HOH . L 5 HOH A 11 205 33 HOH HOH . L 5 HOH A 12 206 35 HOH HOH . L 5 HOH A 13 207 40 HOH HOH . L 5 HOH A 14 208 42 HOH HOH . L 5 HOH A 15 209 44 HOH HOH . L 5 HOH A 16 210 45 HOH HOH . L 5 HOH A 17 211 46 HOH HOH . L 5 HOH A 18 212 53 HOH HOH . L 5 HOH A 19 213 56 HOH HOH . L 5 HOH A 20 214 62 HOH HOH . L 5 HOH A 21 215 65 HOH HOH . L 5 HOH A 22 216 68 HOH HOH . L 5 HOH A 23 217 70 HOH HOH . L 5 HOH A 24 218 73 HOH HOH . L 5 HOH A 25 219 79 HOH HOH . L 5 HOH A 26 220 80 HOH HOH . L 5 HOH A 27 221 82 HOH HOH . L 5 HOH A 28 222 97 HOH HOH . L 5 HOH A 29 223 99 HOH HOH . L 5 HOH A 30 224 111 HOH HOH . L 5 HOH A 31 225 118 HOH HOH . L 5 HOH A 32 226 119 HOH HOH . L 5 HOH A 33 227 126 HOH HOH . L 5 HOH A 34 228 127 HOH HOH . L 5 HOH A 35 229 143 HOH HOH . L 5 HOH A 36 230 144 HOH HOH . L 5 HOH A 37 231 151 HOH HOH . L 5 HOH A 38 232 153 HOH HOH . L 5 HOH A 39 233 156 HOH HOH . M 5 HOH B 1 200 3 HOH HOH . M 5 HOH B 2 201 8 HOH HOH . M 5 HOH B 3 202 12 HOH HOH . M 5 HOH B 4 203 17 HOH HOH . M 5 HOH B 5 204 18 HOH HOH . M 5 HOH B 6 205 19 HOH HOH . M 5 HOH B 7 206 26 HOH HOH . M 5 HOH B 8 207 34 HOH HOH . M 5 HOH B 9 208 49 HOH HOH . M 5 HOH B 10 209 50 HOH HOH . M 5 HOH B 11 210 51 HOH HOH . M 5 HOH B 12 211 54 HOH HOH . M 5 HOH B 13 212 63 HOH HOH . M 5 HOH B 14 213 64 HOH HOH . M 5 HOH B 15 214 71 HOH HOH . M 5 HOH B 16 215 76 HOH HOH . M 5 HOH B 17 216 84 HOH HOH . M 5 HOH B 18 217 86 HOH HOH . M 5 HOH B 19 218 87 HOH HOH . M 5 HOH B 20 219 90 HOH HOH . M 5 HOH B 21 220 95 HOH HOH . M 5 HOH B 22 221 96 HOH HOH . M 5 HOH B 23 222 100 HOH HOH . M 5 HOH B 24 223 103 HOH HOH . M 5 HOH B 25 224 105 HOH HOH . M 5 HOH B 26 225 106 HOH HOH . M 5 HOH B 27 226 107 HOH HOH . M 5 HOH B 28 227 108 HOH HOH . M 5 HOH B 29 228 110 HOH HOH . M 5 HOH B 30 229 114 HOH HOH . M 5 HOH B 31 230 117 HOH HOH . M 5 HOH B 32 231 120 HOH HOH . M 5 HOH B 33 232 123 HOH HOH . M 5 HOH B 34 233 124 HOH HOH . M 5 HOH B 35 234 125 HOH HOH . M 5 HOH B 36 235 128 HOH HOH . M 5 HOH B 37 236 131 HOH HOH . M 5 HOH B 38 237 132 HOH HOH . M 5 HOH B 39 238 134 HOH HOH . M 5 HOH B 40 239 138 HOH HOH . M 5 HOH B 41 240 139 HOH HOH . M 5 HOH B 42 241 140 HOH HOH . M 5 HOH B 43 242 142 HOH HOH . M 5 HOH B 44 243 145 HOH HOH . M 5 HOH B 45 244 146 HOH HOH . M 5 HOH B 46 245 147 HOH HOH . M 5 HOH B 47 246 149 HOH HOH . M 5 HOH B 48 247 152 HOH HOH . N 5 HOH C 1 195 23 HOH HOH . N 5 HOH C 2 196 25 HOH HOH . N 5 HOH C 3 197 37 HOH HOH . N 5 HOH C 4 198 41 HOH HOH . N 5 HOH C 5 199 47 HOH HOH . N 5 HOH C 6 200 48 HOH HOH . N 5 HOH C 7 201 52 HOH HOH . N 5 HOH C 8 202 58 HOH HOH . N 5 HOH C 9 203 59 HOH HOH . N 5 HOH C 10 204 66 HOH HOH . N 5 HOH C 11 205 75 HOH HOH . N 5 HOH C 12 206 78 HOH HOH . N 5 HOH C 13 207 81 HOH HOH . N 5 HOH C 14 208 83 HOH HOH . N 5 HOH C 15 209 88 HOH HOH . N 5 HOH C 16 210 89 HOH HOH . N 5 HOH C 17 211 91 HOH HOH . N 5 HOH C 18 212 94 HOH HOH . N 5 HOH C 19 213 101 HOH HOH . N 5 HOH C 20 214 109 HOH HOH . N 5 HOH C 21 215 113 HOH HOH . N 5 HOH C 22 216 130 HOH HOH . N 5 HOH C 23 217 135 HOH HOH . N 5 HOH C 24 218 136 HOH HOH . N 5 HOH C 25 219 154 HOH HOH . N 5 HOH C 26 220 155 HOH HOH . N 5 HOH C 27 221 159 HOH HOH . O 5 HOH D 1 201 1 HOH HOH . O 5 HOH D 2 202 4 HOH HOH . O 5 HOH D 3 203 5 HOH HOH . O 5 HOH D 4 204 7 HOH HOH . O 5 HOH D 5 205 9 HOH HOH . O 5 HOH D 6 206 10 HOH HOH . O 5 HOH D 7 207 14 HOH HOH . O 5 HOH D 8 208 15 HOH HOH . O 5 HOH D 9 209 16 HOH HOH . O 5 HOH D 10 210 22 HOH HOH . O 5 HOH D 11 211 24 HOH HOH . O 5 HOH D 12 212 27 HOH HOH . O 5 HOH D 13 213 32 HOH HOH . O 5 HOH D 14 214 36 HOH HOH . O 5 HOH D 15 215 38 HOH HOH . O 5 HOH D 16 216 39 HOH HOH . O 5 HOH D 17 217 43 HOH HOH . O 5 HOH D 18 218 55 HOH HOH . O 5 HOH D 19 219 57 HOH HOH . O 5 HOH D 20 220 60 HOH HOH . O 5 HOH D 21 221 61 HOH HOH . O 5 HOH D 22 222 67 HOH HOH . O 5 HOH D 23 223 69 HOH HOH . O 5 HOH D 24 224 72 HOH HOH . O 5 HOH D 25 225 74 HOH HOH . O 5 HOH D 26 226 77 HOH HOH . O 5 HOH D 27 227 85 HOH HOH . O 5 HOH D 28 228 92 HOH HOH . O 5 HOH D 29 229 93 HOH HOH . O 5 HOH D 30 230 98 HOH HOH . O 5 HOH D 31 231 102 HOH HOH . O 5 HOH D 32 232 104 HOH HOH . O 5 HOH D 33 233 112 HOH HOH . O 5 HOH D 34 234 115 HOH HOH . O 5 HOH D 35 235 116 HOH HOH . O 5 HOH D 36 236 121 HOH HOH . O 5 HOH D 37 237 122 HOH HOH . O 5 HOH D 38 238 129 HOH HOH . O 5 HOH D 39 239 133 HOH HOH . O 5 HOH D 40 240 137 HOH HOH . O 5 HOH D 41 241 141 HOH HOH . O 5 HOH D 42 242 148 HOH HOH . O 5 HOH D 43 243 150 HOH HOH . O 5 HOH D 44 244 157 HOH HOH . O 5 HOH D 45 245 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 1.383 24.972 97.061 1 77.62 ? C1 NAG 193 A 1 HETATM 2 C C2 NAG . . . E 3 2.014 24.108 98.152 1 79.32 ? C2 NAG 193 A 1 HETATM 3 C C3 NAG . . . E 3 2.358 24.988 99.335 1 79.9 ? C3 NAG 193 A 1 HETATM 4 C C4 NAG . . . E 3 3.265 26.138 98.867 1 80.56 ? C4 NAG 193 A 1 HETATM 5 C C5 NAG . . . E 3 2.629 26.89 97.672 1 81.27 ? C5 NAG 193 A 1 HETATM 6 C C6 NAG . . . E 3 3.49 28.002 97.067 1 82.32 ? C6 NAG 193 A 1 HETATM 7 C C7 NAG . . . E 3 -0.192 23.229 98.764 1 82.14 ? C7 NAG 193 A 1 HETATM 8 C C8 NAG . . . E 3 -0.951 21.972 99.145 1 82.36 ? C8 NAG 193 A 1 HETATM 9 N N2 NAG . . . E 3 1.11 23.044 98.547 1 81.03 ? N2 NAG 193 A 1 HETATM 10 O O3 NAG . . . E 3 3.02 24.206 100.319 1 80.42 ? O3 NAG 193 A 1 HETATM 11 O O4 NAG . . . E 3 3.475 27.044 99.945 1 80.99 ? O4 NAG 193 A 1 HETATM 12 O O5 NAG . . . E 3 2.307 25.961 96.61 1 79.4 ? O5 NAG 193 A 1 HETATM 13 O O6 NAG . . . E 3 3.072 29.292 97.515 1 82.66 ? O6 NAG 193 A 1 HETATM 14 O O7 NAG . . . E 3 -0.737 24.331 98.685 1 82.61 ? O7 NAG 193 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #