data_1IFU # _model_server_result.job_id B2IVj_YRkPLi8MQfzidpdA _model_server_result.datetime_utc '2024-11-22 12:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ifu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":264}' # _entry.id 1IFU # _exptl.entry_id 1IFU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IFU _cell.length_a 68.7 _cell.length_b 68.7 _cell.length_c 141.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_646 y+1,x-1,-z+1 0 1 0 1 0 0 0 0 -1 68.7 -68.7 141.9 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id FMC _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMC doub 83 n y N1 C6 FMC sing 84 n y C2 N3 FMC sing 85 n y C2 H2 FMC sing 86 n n N3 C4 FMC doub 87 n y C4 C5 FMC sing 88 n y C4 C9 FMC sing 89 n y C5 C6 FMC doub 90 n y C5 N7 FMC sing 91 n y C6 N6 FMC sing 92 n n N6 HN6 FMC sing 93 n n N6 HN6A FMC sing 94 n n N7 N8 FMC sing 95 n y N7 HN7 FMC sing 96 n n N8 C9 FMC doub 97 n y C9 C1' FMC sing 98 n n C1' C2' FMC sing 99 n n C1' O4' FMC sing 100 n n C1' H1' FMC sing 101 n n C2' O2' FMC sing 102 n n C2' C3' FMC sing 103 n n C2' H2' FMC sing 104 n n O2' HO2' FMC sing 105 n n C3' O3' FMC sing 106 n n C3' C4' FMC sing 107 n n C3' H3' FMC sing 108 n n O3' HO3' FMC sing 109 n n C4' O4' FMC sing 110 n n C4' C5' FMC sing 111 n n C4' H4' FMC sing 112 n n C5' O5' FMC sing 113 n n C5' H5' FMC sing 114 n n C5' "H5'A" FMC sing 115 n n O5' HO5' FMC sing 116 n n # _atom_sites.entry_id 1IFU _atom_sites.fract_transf_matrix[1][1] 0.014556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMC A 1 264 1 FMC FMC . C 3 HOH A 1 300 300 HOH HOH . C 3 HOH A 2 301 301 HOH HOH . C 3 HOH A 3 302 302 HOH HOH . C 3 HOH A 4 303 303 HOH HOH . C 3 HOH A 5 304 304 HOH HOH . C 3 HOH A 6 305 305 HOH HOH . C 3 HOH A 7 306 306 HOH HOH . C 3 HOH A 8 307 307 HOH HOH . C 3 HOH A 9 308 308 HOH HOH . C 3 HOH A 10 309 309 HOH HOH . C 3 HOH A 11 310 310 HOH HOH . C 3 HOH A 12 311 311 HOH HOH . C 3 HOH A 13 312 312 HOH HOH . C 3 HOH A 14 313 313 HOH HOH . C 3 HOH A 15 314 314 HOH HOH . C 3 HOH A 16 315 315 HOH HOH . C 3 HOH A 17 316 316 HOH HOH . C 3 HOH A 18 317 317 HOH HOH . C 3 HOH A 19 318 318 HOH HOH . C 3 HOH A 20 319 319 HOH HOH . C 3 HOH A 21 320 320 HOH HOH . C 3 HOH A 22 321 321 HOH HOH . C 3 HOH A 23 322 322 HOH HOH . C 3 HOH A 24 323 323 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMC . . . B 2 60.58 -23.456 98.375 1 37.22 ? N1 FMC 264 A 1 HETATM 2 C C2 FMC . . . B 2 60.087 -23.06 97.231 1 35.15 ? C2 FMC 264 A 1 HETATM 3 N N3 FMC . . . B 2 58.904 -23.205 96.792 1 35.29 ? N3 FMC 264 A 1 HETATM 4 C C4 FMC . . . B 2 58.153 -23.854 97.693 1 42.17 ? C4 FMC 264 A 1 HETATM 5 C C5 FMC . . . B 2 58.556 -24.292 98.928 1 36.06 ? C5 FMC 264 A 1 HETATM 6 C C6 FMC . . . B 2 59.854 -24.089 99.308 1 35.2 ? C6 FMC 264 A 1 HETATM 7 N N6 FMC . . . B 2 60.374 -24.493 100.47 1 27.29 ? N6 FMC 264 A 1 HETATM 8 N N7 FMC . . . B 2 57.536 -24.909 99.516 1 40.46 ? N7 FMC 264 A 1 HETATM 9 N N8 FMC . . . B 2 56.504 -24.862 98.645 1 46.52 ? N8 FMC 264 A 1 HETATM 10 C C9 FMC . . . B 2 56.793 -24.226 97.489 1 49.81 ? C9 FMC 264 A 1 HETATM 11 C C1' FMC . . . B 2 55.826 -23.97 96.309 1 58.82 ? C1' FMC 264 A 1 HETATM 12 C C2' FMC . . . B 2 56.491 -23.872 94.919 1 63.55 ? C2' FMC 264 A 1 HETATM 13 O O2' FMC . . . B 2 55.652 -23.051 93.966 1 57.72 ? O2' FMC 264 A 1 HETATM 14 C C3' FMC . . . B 2 56.574 -25.304 94.589 1 65.63 ? C3' FMC 264 A 1 HETATM 15 O O3' FMC . . . B 2 56.932 -25.356 93.206 1 72.66 ? O3' FMC 264 A 1 HETATM 16 C C4' FMC . . . B 2 55.094 -25.661 94.945 1 67.56 ? C4' FMC 264 A 1 HETATM 17 O O4' FMC . . . B 2 54.845 -25.026 96.198 1 64.92 ? O4' FMC 264 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #