data_1IGJ # _model_server_result.job_id uNpISLKo9LMg6sEzyicHMA _model_server_result.datetime_utc '2024-11-24 20:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1igj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":228}' # _entry.id 1IGJ # _exptl.entry_id 1IGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 780.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIGOXIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.37 _cell.angle_gamma 90 _cell.entry_id 1IGJ _cell.length_a 44.16 _cell.length_b 164.43 _cell.length_c 70.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 93 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 139 A CYS 134 1_555 A SG CYS 199 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf4 B SG CYS 146 B CYS 142 1_555 B SG CYS 201 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 93 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf6 C SG CYS 139 C CYS 134 1_555 C SG CYS 199 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf8 D SG CYS 146 D CYS 142 1_555 D SG CYS 201 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? # _chem_comp.formula 'C41 H64 O14' _chem_comp.formula_weight 780.938 _chem_comp.id DGX _chem_comp.mon_nstd_flag . _chem_comp.name DIGOXIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DGX sing 83 n n C1 C10 DGX sing 84 n n C2 C3 DGX sing 85 n n C3 O3 DGX sing 86 n n C3 C4 DGX sing 87 n n O3 C1X DGX sing 88 n n C4 C5 DGX sing 89 n n C5 C6 DGX sing 90 n n C5 C10 DGX sing 91 n n C6 C7 DGX sing 92 n n C7 C8 DGX sing 93 n n C8 C9 DGX sing 94 n n C8 C14 DGX sing 95 n n C9 C10 DGX sing 96 n n C9 C11 DGX sing 97 n n C10 C19 DGX sing 98 n n C11 C12 DGX sing 99 n n C12 O12 DGX sing 100 n n C12 C13 DGX sing 101 n n C13 C14 DGX sing 102 n n C13 C17 DGX sing 103 n n C13 C18 DGX sing 104 n n C14 O14 DGX sing 105 n n C14 C15 DGX sing 106 n n C15 C16 DGX sing 107 n n C16 C17 DGX sing 108 n n C17 C20 DGX sing 109 n n C1X C2X DGX sing 110 n n C1X O5X DGX sing 111 n n C1Y C2Y DGX sing 112 n n C1Y O4X DGX sing 113 n n C1Y O5Y DGX sing 114 n n C1Z C2Z DGX sing 115 n n C1Z O4Y DGX sing 116 n n C1Z O5Z DGX sing 117 n n C20 C21 DGX sing 118 n n C20 C22 DGX doub 119 n n C21 O21 DGX sing 120 n n O21 C23 DGX sing 121 n n C22 C23 DGX sing 122 n n C23 O23 DGX doub 123 n n C2X C3X DGX sing 124 n n C2Y C3Y DGX sing 125 n n C2Z C3Z DGX sing 126 n n C3X O3X DGX sing 127 n n C3X C4X DGX sing 128 n n C3Y O3Y DGX sing 129 n n C3Y C4Y DGX sing 130 n n C3Z O3Z DGX sing 131 n n C3Z C4Z DGX sing 132 n n C4X O4X DGX sing 133 n n C4X C5X DGX sing 134 n n C4Y O4Y DGX sing 135 n n C4Y C5Y DGX sing 136 n n C4Z O4Z DGX sing 137 n n C4Z C5Z DGX sing 138 n n C5X O5X DGX sing 139 n n C5X C6X DGX sing 140 n n C5Y O5Y DGX sing 141 n n C5Y C6Y DGX sing 142 n n C5Z O5Z DGX sing 143 n n C5Z C6Z DGX sing 144 n n C1 H1 DGX sing 145 n n C1 H1A DGX sing 146 n n C2 H2 DGX sing 147 n n C2 H2A DGX sing 148 n n C3 H3 DGX sing 149 n n C4 H4 DGX sing 150 n n C4 H4A DGX sing 151 n n C5 H5 DGX sing 152 n n C6 H6 DGX sing 153 n n C6 H6A DGX sing 154 n n C7 H7 DGX sing 155 n n C7 H7A DGX sing 156 n n C8 H8 DGX sing 157 n n C9 H9 DGX sing 158 n n C11 H11 DGX sing 159 n n C11 H11A DGX sing 160 n n C12 H12 DGX sing 161 n n O12 HO12 DGX sing 162 n n O14 HO14 DGX sing 163 n n C15 H15 DGX sing 164 n n C15 H15A DGX sing 165 n n C16 H16 DGX sing 166 n n C16 H16A DGX sing 167 n n C17 H17 DGX sing 168 n n C18 H18 DGX sing 169 n n C18 H18A DGX sing 170 n n C18 H18B DGX sing 171 n n C19 H19 DGX sing 172 n n C19 H19A DGX sing 173 n n C19 H19B DGX sing 174 n n C1X H1X DGX sing 175 n n C1Y H1Y DGX sing 176 n n C1Z H1Z DGX sing 177 n n C21 H21 DGX sing 178 n n C21 H21A DGX sing 179 n n C22 H22 DGX sing 180 n n C2X H2X DGX sing 181 n n C2X H2XA DGX sing 182 n n C2Y H2Y DGX sing 183 n n C2Y H2YA DGX sing 184 n n C2Z H2Z DGX sing 185 n n C2Z H2ZA DGX sing 186 n n C3X H3X DGX sing 187 n n O3X HO3X DGX sing 188 n n C3Y H3Y DGX sing 189 n n O3Y HO3Y DGX sing 190 n n C3Z H3Z DGX sing 191 n n O3Z HO3Z DGX sing 192 n n C4X H4X DGX sing 193 n n C4Y H4Y DGX sing 194 n n C4Z H4Z DGX sing 195 n n O4Z HO4Z DGX sing 196 n n C5X H5X DGX sing 197 n n C5Y H5Y DGX sing 198 n n C5Z H5Z DGX sing 199 n n C6X H6X DGX sing 200 n n C6X H6XA DGX sing 201 n n C6X H6XB DGX sing 202 n n C6Y H6Y DGX sing 203 n n C6Y H6YA DGX sing 204 n n C6Y H6YB DGX sing 205 n n C6Z H6Z DGX sing 206 n n C6Z H6ZA DGX sing 207 n n C6Z H6ZB DGX sing 208 n n # _atom_sites.entry_id 1IGJ _atom_sites.fract_transf_matrix[1][1] 0.022645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00752 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DGX B 1 228 1 DGX DGX . F 3 DGX D 1 228 1 DGX DGX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DGX . . . E 3 34.818 35.277 72.317 1 21.04 ? C1 DGX 228 B 1 HETATM 2 C C2 DGX . . . E 3 36.249 35.07 71.819 1 25.71 ? C2 DGX 228 B 1 HETATM 3 C C3 DGX . . . E 3 37.293 35.397 72.887 1 31.33 ? C3 DGX 228 B 1 HETATM 4 O O3 DGX . . . E 3 37.18 34.553 74.042 1 35.16 ? O3 DGX 228 B 1 HETATM 5 C C4 DGX . . . E 3 37.087 36.836 73.341 1 29.23 ? C4 DGX 228 B 1 HETATM 6 C C5 DGX . . . E 3 35.674 37.135 73.838 1 19.1 ? C5 DGX 228 B 1 HETATM 7 C C6 DGX . . . E 3 35.536 38.591 74.276 1 21.03 ? C6 DGX 228 B 1 HETATM 8 C C7 DGX . . . E 3 35.515 39.533 73.075 1 22.29 ? C7 DGX 228 B 1 HETATM 9 C C8 DGX . . . E 3 34.319 39.229 72.177 1 20.75 ? C8 DGX 228 B 1 HETATM 10 C C9 DGX . . . E 3 34.288 37.761 71.746 1 22.18 ? C9 DGX 228 B 1 HETATM 11 C C10 DGX . . . E 3 34.538 36.681 72.874 1 20.5 ? C10 DGX 228 B 1 HETATM 12 C C11 DGX . . . E 3 32.923 37.547 71.1 1 19.06 ? C11 DGX 228 B 1 HETATM 13 C C12 DGX . . . E 3 32.608 38.506 69.961 1 18.81 ? C12 DGX 228 B 1 HETATM 14 O O12 DGX . . . E 3 31.29 38.193 69.489 1 23.66 ? O12 DGX 228 B 1 HETATM 15 C C13 DGX . . . E 3 32.724 40.038 70.303 1 18.19 ? C13 DGX 228 B 1 HETATM 16 C C14 DGX . . . E 3 34.095 40.291 71.024 1 19.26 ? C14 DGX 228 B 1 HETATM 17 O O14 DGX . . . E 3 34.146 41.67 71.543 1 19.69 ? O14 DGX 228 B 1 HETATM 18 C C15 DGX . . . E 3 35.058 40.309 69.815 1 18.51 ? C15 DGX 228 B 1 HETATM 19 C C16 DGX . . . E 3 34.337 41.051 68.691 1 16.93 ? C16 DGX 228 B 1 HETATM 20 C C17 DGX . . . E 3 32.852 40.778 68.909 1 17.37 ? C17 DGX 228 B 1 HETATM 21 C C18 DGX . . . E 3 31.547 40.509 71.179 1 15.67 ? C18 DGX 228 B 1 HETATM 22 C C19 DGX . . . E 3 33.281 36.408 73.723 1 22.3 ? C19 DGX 228 B 1 HETATM 23 C C1X DGX . . . E 3 38.34 33.862 74.54 1 42.55 ? C1X DGX 228 B 1 HETATM 24 C C20 DGX . . . E 3 32.02 42.008 68.689 1 12.8 ? C20 DGX 228 B 1 HETATM 25 C C21 DGX . . . E 3 32.425 43.357 69.152 1 8.52 ? C21 DGX 228 B 1 HETATM 26 O O21 DGX . . . E 3 31.284 44.196 68.85 1 20.59 ? O21 DGX 228 B 1 HETATM 27 C C22 DGX . . . E 3 30.805 42.109 68.124 1 9.43 ? C22 DGX 228 B 1 HETATM 28 C C23 DGX . . . E 3 30.363 43.483 68.194 1 12.84 ? C23 DGX 228 B 1 HETATM 29 O O23 DGX . . . E 3 29.312 44.016 67.823 1 13.42 ? O23 DGX 228 B 1 HETATM 30 C C2X DGX . . . E 3 38.617 32.644 73.655 1 45.98 ? C2X DGX 228 B 1 HETATM 31 C C3X DGX . . . E 3 39.895 31.911 74.07 1 48.27 ? C3X DGX 228 B 1 HETATM 32 O O3X DGX . . . E 3 39.757 31.23 75.333 1 49.19 ? O3X DGX 228 B 1 HETATM 33 C C4X DGX . . . E 3 41.057 32.907 74.113 1 47.57 ? C4X DGX 228 B 1 HETATM 34 O O4X DGX . . . E 3 42.218 32.239 74.628 1 51.11 ? O4X DGX 228 B 1 HETATM 35 C C5X DGX . . . E 3 40.718 34.133 74.977 1 47.79 ? C5X DGX 228 B 1 HETATM 36 O O5X DGX . . . E 3 39.483 34.72 74.534 1 46.39 ? O5X DGX 228 B 1 HETATM 37 C C6X DGX . . . E 3 41.792 35.205 74.864 1 48.05 ? C6X DGX 228 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 208 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #