data_1IGJ # _model_server_result.job_id JAv0hx09as-QpwvAZFEXvw _model_server_result.datetime_utc '2024-11-08 07:16:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1igj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":228}' # _entry.id 1IGJ # _exptl.entry_id 1IGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 780.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIGOXIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.37 _cell.angle_gamma 90 _cell.entry_id 1IGJ _cell.length_a 44.16 _cell.length_b 164.43 _cell.length_c 70.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 93 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 139 A CYS 134 1_555 A SG CYS 199 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf4 B SG CYS 146 B CYS 142 1_555 B SG CYS 201 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 93 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf6 C SG CYS 139 C CYS 134 1_555 C SG CYS 199 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf8 D SG CYS 146 D CYS 142 1_555 D SG CYS 201 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? # _chem_comp.formula 'C41 H64 O14' _chem_comp.formula_weight 780.938 _chem_comp.id DGX _chem_comp.mon_nstd_flag . _chem_comp.name DIGOXIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DGX sing 83 n n C1 C10 DGX sing 84 n n C2 C3 DGX sing 85 n n C3 O3 DGX sing 86 n n C3 C4 DGX sing 87 n n O3 C1X DGX sing 88 n n C4 C5 DGX sing 89 n n C5 C6 DGX sing 90 n n C5 C10 DGX sing 91 n n C6 C7 DGX sing 92 n n C7 C8 DGX sing 93 n n C8 C9 DGX sing 94 n n C8 C14 DGX sing 95 n n C9 C10 DGX sing 96 n n C9 C11 DGX sing 97 n n C10 C19 DGX sing 98 n n C11 C12 DGX sing 99 n n C12 O12 DGX sing 100 n n C12 C13 DGX sing 101 n n C13 C14 DGX sing 102 n n C13 C17 DGX sing 103 n n C13 C18 DGX sing 104 n n C14 O14 DGX sing 105 n n C14 C15 DGX sing 106 n n C15 C16 DGX sing 107 n n C16 C17 DGX sing 108 n n C17 C20 DGX sing 109 n n C1X C2X DGX sing 110 n n C1X O5X DGX sing 111 n n C1Y C2Y DGX sing 112 n n C1Y O4X DGX sing 113 n n C1Y O5Y DGX sing 114 n n C1Z C2Z DGX sing 115 n n C1Z O4Y DGX sing 116 n n C1Z O5Z DGX sing 117 n n C20 C21 DGX sing 118 n n C20 C22 DGX doub 119 n n C21 O21 DGX sing 120 n n O21 C23 DGX sing 121 n n C22 C23 DGX sing 122 n n C23 O23 DGX doub 123 n n C2X C3X DGX sing 124 n n C2Y C3Y DGX sing 125 n n C2Z C3Z DGX sing 126 n n C3X O3X DGX sing 127 n n C3X C4X DGX sing 128 n n C3Y O3Y DGX sing 129 n n C3Y C4Y DGX sing 130 n n C3Z O3Z DGX sing 131 n n C3Z C4Z DGX sing 132 n n C4X O4X DGX sing 133 n n C4X C5X DGX sing 134 n n C4Y O4Y DGX sing 135 n n C4Y C5Y DGX sing 136 n n C4Z O4Z DGX sing 137 n n C4Z C5Z DGX sing 138 n n C5X O5X DGX sing 139 n n C5X C6X DGX sing 140 n n C5Y O5Y DGX sing 141 n n C5Y C6Y DGX sing 142 n n C5Z O5Z DGX sing 143 n n C5Z C6Z DGX sing 144 n n C1 H1 DGX sing 145 n n C1 H1A DGX sing 146 n n C2 H2 DGX sing 147 n n C2 H2A DGX sing 148 n n C3 H3 DGX sing 149 n n C4 H4 DGX sing 150 n n C4 H4A DGX sing 151 n n C5 H5 DGX sing 152 n n C6 H6 DGX sing 153 n n C6 H6A DGX sing 154 n n C7 H7 DGX sing 155 n n C7 H7A DGX sing 156 n n C8 H8 DGX sing 157 n n C9 H9 DGX sing 158 n n C11 H11 DGX sing 159 n n C11 H11A DGX sing 160 n n C12 H12 DGX sing 161 n n O12 HO12 DGX sing 162 n n O14 HO14 DGX sing 163 n n C15 H15 DGX sing 164 n n C15 H15A DGX sing 165 n n C16 H16 DGX sing 166 n n C16 H16A DGX sing 167 n n C17 H17 DGX sing 168 n n C18 H18 DGX sing 169 n n C18 H18A DGX sing 170 n n C18 H18B DGX sing 171 n n C19 H19 DGX sing 172 n n C19 H19A DGX sing 173 n n C19 H19B DGX sing 174 n n C1X H1X DGX sing 175 n n C1Y H1Y DGX sing 176 n n C1Z H1Z DGX sing 177 n n C21 H21 DGX sing 178 n n C21 H21A DGX sing 179 n n C22 H22 DGX sing 180 n n C2X H2X DGX sing 181 n n C2X H2XA DGX sing 182 n n C2Y H2Y DGX sing 183 n n C2Y H2YA DGX sing 184 n n C2Z H2Z DGX sing 185 n n C2Z H2ZA DGX sing 186 n n C3X H3X DGX sing 187 n n O3X HO3X DGX sing 188 n n C3Y H3Y DGX sing 189 n n O3Y HO3Y DGX sing 190 n n C3Z H3Z DGX sing 191 n n O3Z HO3Z DGX sing 192 n n C4X H4X DGX sing 193 n n C4Y H4Y DGX sing 194 n n C4Z H4Z DGX sing 195 n n O4Z HO4Z DGX sing 196 n n C5X H5X DGX sing 197 n n C5Y H5Y DGX sing 198 n n C5Z H5Z DGX sing 199 n n C6X H6X DGX sing 200 n n C6X H6XA DGX sing 201 n n C6X H6XB DGX sing 202 n n C6Y H6Y DGX sing 203 n n C6Y H6YA DGX sing 204 n n C6Y H6YB DGX sing 205 n n C6Z H6Z DGX sing 206 n n C6Z H6ZA DGX sing 207 n n C6Z H6ZB DGX sing 208 n n # _atom_sites.entry_id 1IGJ _atom_sites.fract_transf_matrix[1][1] 0.022645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00752 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DGX B 1 228 1 DGX DGX . F 3 DGX D 1 228 1 DGX DGX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DGX . . . F 3 -12.86 30.553 29.603 1 39.86 ? C1 DGX 228 D 1 HETATM 2 C C2 DGX . . . F 3 -14.237 30.828 29.005 1 41.04 ? C2 DGX 228 D 1 HETATM 3 C C3 DGX . . . F 3 -15.345 30.519 30.003 1 43.23 ? C3 DGX 228 D 1 HETATM 4 O O3 DGX . . . F 3 -15.166 31.282 31.208 1 49.01 ? O3 DGX 228 D 1 HETATM 5 C C4 DGX . . . F 3 -15.296 29.044 30.367 1 41.3 ? C4 DGX 228 D 1 HETATM 6 C C5 DGX . . . F 3 -13.959 28.72 31.024 1 38.77 ? C5 DGX 228 D 1 HETATM 7 C C6 DGX . . . F 3 -13.913 27.294 31.556 1 39.44 ? C6 DGX 228 D 1 HETATM 8 C C7 DGX . . . F 3 -13.82 26.281 30.426 1 38.87 ? C7 DGX 228 D 1 HETATM 9 C C8 DGX . . . F 3 -12.619 26.595 29.533 1 38.46 ? C8 DGX 228 D 1 HETATM 10 C C9 DGX . . . F 3 -12.613 28.04 29.022 1 40.17 ? C9 DGX 228 D 1 HETATM 11 C C10 DGX . . . F 3 -12.732 29.117 30.14 1 38.61 ? C10 DGX 228 D 1 HETATM 12 C C11 DGX . . . F 3 -11.379 28.269 28.166 1 37.57 ? C11 DGX 228 D 1 HETATM 13 C C12 DGX . . . F 3 -11.39 27.304 26.999 1 35.91 ? C12 DGX 228 D 1 HETATM 14 O O12 DGX . . . F 3 -10.385 27.641 26.038 1 38.1 ? O12 DGX 228 D 1 HETATM 15 C C13 DGX . . . F 3 -11.27 25.824 27.461 1 34.84 ? C13 DGX 228 D 1 HETATM 16 C C14 DGX . . . F 3 -12.462 25.51 28.431 1 35.3 ? C14 DGX 228 D 1 HETATM 17 O O14 DGX . . . F 3 -12.283 24.232 29.097 1 34.53 ? O14 DGX 228 D 1 HETATM 18 C C15 DGX . . . F 3 -13.657 25.301 27.48 1 35.58 ? C15 DGX 228 D 1 HETATM 19 C C16 DGX . . . F 3 -13.099 24.823 26.14 1 34.65 ? C16 DGX 228 D 1 HETATM 20 C C17 DGX . . . F 3 -11.576 25.001 26.17 1 32.81 ? C17 DGX 228 D 1 HETATM 21 C C18 DGX . . . F 3 -9.89 25.586 28.116 1 35.54 ? C18 DGX 228 D 1 HETATM 22 C C19 DGX . . . F 3 -11.434 29.217 30.961 1 38.04 ? C19 DGX 228 D 1 HETATM 23 C C1X DGX . . . F 3 -16.271 32.06 31.678 1 49.88 ? C1X DGX 228 D 1 HETATM 24 C C20 DGX . . . F 3 -10.752 23.771 25.944 1 29.34 ? C20 DGX 228 D 1 HETATM 25 C C21 DGX . . . F 3 -11.179 22.405 26.318 1 27.33 ? C21 DGX 228 D 1 HETATM 26 O O21 DGX . . . F 3 -10.026 21.567 26.076 1 30.52 ? O21 DGX 228 D 1 HETATM 27 C C22 DGX . . . F 3 -9.505 23.688 25.46 1 28.21 ? C22 DGX 228 D 1 HETATM 28 C C23 DGX . . . F 3 -9.066 22.307 25.521 1 27.73 ? C23 DGX 228 D 1 HETATM 29 O O23 DGX . . . F 3 -7.994 21.8 25.215 1 28.04 ? O23 DGX 228 D 1 HETATM 30 C C2X DGX . . . F 3 -16.478 33.26 30.752 1 51.58 ? C2X DGX 228 D 1 HETATM 31 C C3X DGX . . . F 3 -17.685 34.07 31.207 1 54.12 ? C3X DGX 228 D 1 HETATM 32 O O3X DGX . . . F 3 -17.459 34.703 32.486 1 53.77 ? O3X DGX 228 D 1 HETATM 33 C C4X DGX . . . F 3 -18.904 33.142 31.257 1 53.82 ? C4X DGX 228 D 1 HETATM 34 O O4X DGX . . . F 3 -19.987 33.844 31.887 1 55.76 ? O4X DGX 228 D 1 HETATM 35 C C5X DGX . . . F 3 -18.64 31.837 32.027 1 53.09 ? C5X DGX 228 D 1 HETATM 36 O O5X DGX . . . F 3 -17.428 31.24 31.613 1 50.43 ? O5X DGX 228 D 1 HETATM 37 C C6X DGX . . . F 3 -19.671 30.779 31.682 1 54.58 ? C6X DGX 228 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 37 #