data_1IGR # _model_server_result.job_id 3iB9FO7BLxid8EUmwve3lg _model_server_result.datetime_utc '2024-12-22 16:20:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1igr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":483}' # _entry.id 1IGR # _exptl.entry_id 1IGR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IGR _cell.length_a 77.39 _cell.length_b 99.72 _cell.length_c 120.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IGR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 3 5 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 105 NAG 2 n B NAG 2 B 2 NAG A 105 NAG 2 n B FUC 3 B 3 FUC A 105 FUC 3 n C NAG 1 C 1 NAG A 284 NAG 3 n C NAG 2 C 2 NAG A 284 NAG 3 n C BMA 3 C 3 BMA A 284 MAN 3 n C MAN 4 C 4 MAN A 284 MAN 3 n C FUC 5 C 5 FUC A 284 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 22 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf2 A SG CYS 120 A CYS 120 1_555 A SG CYS 148 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf3 A SG CYS 152 A CYS 152 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf4 A SG CYS 162 A CYS 162 1_555 A SG CYS 181 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 A SG CYS 185 A CYS 185 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 189 A CYS 189 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf7 A SG CYS 201 A CYS 201 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf8 A SG CYS 205 A CYS 205 1_555 A SG CYS 218 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf9 A SG CYS 221 A CYS 221 1_555 A SG CYS 230 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf10 A SG CYS 234 A CYS 234 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf11 A SG CYS 252 A CYS 252 1_555 A SG CYS 273 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf12 A SG CYS 277 A CYS 277 1_555 A SG CYS 291 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf13 A SG CYS 294 A CYS 294 1_555 A SG CYS 298 A CYS 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf14 A SG CYS 302 A CYS 302 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf15 A SG CYS 425 A CYS 425 1_555 A SG CYS 458 A CYS 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 21 A ASN 21 1_555 D C1 NAG . A NAG 479 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.5 ? covale ? covale2 A ND2 ASN 105 A ASN 105 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale3 A ND2 ASN 214 A ASN 214 1_555 E C1 NAG . A NAG 483 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.504 ? covale ? covale4 A ND2 ASN 284 A ASN 284 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale8 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale9 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale10 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 308 n n C1 O1 NAG sing 309 n n C1 O5 NAG sing 310 n n C1 H1 NAG sing 311 n n C2 C3 NAG sing 312 n n C2 N2 NAG sing 313 n n C2 H2 NAG sing 314 n n C3 C4 NAG sing 315 n n C3 O3 NAG sing 316 n n C3 H3 NAG sing 317 n n C4 C5 NAG sing 318 n n C4 O4 NAG sing 319 n n C4 H4 NAG sing 320 n n C5 C6 NAG sing 321 n n C5 O5 NAG sing 322 n n C5 H5 NAG sing 323 n n C6 O6 NAG sing 324 n n C6 H61 NAG sing 325 n n C6 H62 NAG sing 326 n n C7 C8 NAG sing 327 n n C7 N2 NAG sing 328 n n C7 O7 NAG doub 329 n n C8 H81 NAG sing 330 n n C8 H82 NAG sing 331 n n C8 H83 NAG sing 332 n n N2 HN2 NAG sing 333 n n O1 HO1 NAG sing 334 n n O3 HO3 NAG sing 335 n n O4 HO4 NAG sing 336 n n O6 HO6 NAG sing 337 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1IGR _atom_sites.fract_transf_matrix[1][1] 0.012922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 479 21 NAG NAG A E 4 NAG A 1 483 214 NAG NAG A F 5 SO4 A 1 493 493 SO4 SO4 . G 5 SO4 A 1 494 494 SO4 SO4 . H 5 SO4 A 1 495 495 SO4 SO4 . I 5 SO4 A 1 496 496 SO4 SO4 . J 5 SO4 A 1 497 497 SO4 SO4 . K 5 SO4 A 1 498 498 SO4 SO4 . L 5 SO4 A 1 499 499 SO4 SO4 . M 5 SO4 A 1 500 500 SO4 SO4 . N 6 HOH A 1 501 501 HOH HOH . N 6 HOH A 2 502 502 HOH HOH . N 6 HOH A 3 503 503 HOH HOH . N 6 HOH A 4 504 504 HOH HOH . N 6 HOH A 5 505 505 HOH HOH . N 6 HOH A 6 506 506 HOH HOH . N 6 HOH A 7 507 507 HOH HOH . N 6 HOH A 8 508 508 HOH HOH . N 6 HOH A 9 509 509 HOH HOH . N 6 HOH A 10 510 510 HOH HOH . N 6 HOH A 11 511 511 HOH HOH . N 6 HOH A 12 512 512 HOH HOH . N 6 HOH A 13 513 513 HOH HOH . N 6 HOH A 14 514 514 HOH HOH . N 6 HOH A 15 515 515 HOH HOH . N 6 HOH A 16 516 516 HOH HOH . N 6 HOH A 17 517 517 HOH HOH . N 6 HOH A 18 518 518 HOH HOH . N 6 HOH A 19 519 519 HOH HOH . N 6 HOH A 20 520 520 HOH HOH . N 6 HOH A 21 521 521 HOH HOH . N 6 HOH A 22 522 522 HOH HOH . N 6 HOH A 23 523 523 HOH HOH . N 6 HOH A 24 524 524 HOH HOH . N 6 HOH A 25 525 525 HOH HOH . N 6 HOH A 26 526 526 HOH HOH . N 6 HOH A 27 527 527 HOH HOH . N 6 HOH A 28 528 528 HOH HOH . N 6 HOH A 29 529 529 HOH HOH . N 6 HOH A 30 530 530 HOH HOH . N 6 HOH A 31 531 531 HOH HOH . N 6 HOH A 32 532 532 HOH HOH . N 6 HOH A 33 533 533 HOH HOH . N 6 HOH A 34 534 534 HOH HOH . N 6 HOH A 35 535 535 HOH HOH . N 6 HOH A 36 536 536 HOH HOH . N 6 HOH A 37 537 537 HOH HOH . N 6 HOH A 38 538 538 HOH HOH . N 6 HOH A 39 539 539 HOH HOH . N 6 HOH A 40 540 540 HOH HOH . N 6 HOH A 41 541 541 HOH HOH . N 6 HOH A 42 542 542 HOH HOH . N 6 HOH A 43 543 543 HOH HOH . N 6 HOH A 44 544 544 HOH HOH . N 6 HOH A 45 545 545 HOH HOH . N 6 HOH A 46 546 546 HOH HOH . N 6 HOH A 47 547 547 HOH HOH . N 6 HOH A 48 548 548 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . A E 4 49.927 11.058 87.926 1 96.51 ? C1 NAG 483 A 1 HETATM 2 C C2 NAG . . A E 4 50.538 11.751 89.1 1 99.92 ? C2 NAG 483 A 1 HETATM 3 C C3 NAG . . A E 4 51.967 12.134 88.802 1 101.03 ? C3 NAG 483 A 1 HETATM 4 C C4 NAG . . A E 4 52.643 10.771 88.506 1 101.15 ? C4 NAG 483 A 1 HETATM 5 C C5 NAG . . A E 4 52.039 10.16 87.218 1 100.16 ? C5 NAG 483 A 1 HETATM 6 C C6 NAG . . A E 4 52.746 8.852 86.934 1 99.75 ? C6 NAG 483 A 1 HETATM 7 C C7 NAG . . A E 4 49.299 13.021 90.759 1 103.63 ? C7 NAG 483 A 1 HETATM 8 C C8 NAG . . A E 4 48.526 14.239 91.102 1 105.02 ? C8 NAG 483 A 1 HETATM 9 N N2 NAG . . A E 4 49.662 12.898 89.458 1 101.79 ? N2 NAG 483 A 1 HETATM 10 O O3 NAG . . A E 4 52.535 12.761 89.949 1 100.89 ? O3 NAG 483 A 1 HETATM 11 O O4 NAG . . A E 4 54.067 10.834 88.441 1 101.35 ? O4 NAG 483 A 1 HETATM 12 O O5 NAG . . A E 4 50.671 9.918 87.503 1 98.59 ? O5 NAG 483 A 1 HETATM 13 O O6 NAG . . A E 4 52.088 7.704 87.302 1 101.54 ? O6 NAG 483 A 1 HETATM 14 O O7 NAG . . A E 4 49.541 12.267 91.586 1 105.48 ? O7 NAG 483 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #