data_1IGX # _model_server_result.job_id T5j0ZcGinUvgLK-oHp1MUA _model_server_result.datetime_utc '2024-11-21 23:38:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1igx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 1IGX # _exptl.entry_id 1IGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 619.575 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING CO' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IGX _cell.length_a 182.17 _cell.length_b 182.17 _cell.length_c 103.11 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 273.255 -157.763848 -34.37 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing 5 ? 3 5 4 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 661 NAG 2 n B NDG 2 B 2 NDG B 662 NAG 3 n C NAG 1 C 1 NAG C 671 NAG 3 n C NAG 2 C 2 NAG C 672 NAG 3 n C BMA 3 C 3 BMA C 673 BMA 3 n C BMA 4 C 4 BMA C 674 BMA 3 n C MAN 5 C 5 MAN C 675 BMA 4 n D NAG 1 D 1 NAG D 681 NAG 4 n D NAG 2 D 2 NAG D 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 36 1_555 A SG CYS 23 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 13 A CYS 37 1_555 A SG CYS 135 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 17 A CYS 41 1_555 A SG CYS 33 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 35 A CYS 59 1_555 A SG CYS 45 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 545 A CYS 569 1_555 A SG CYS 551 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 44 A ASN 68 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale2 A ND2 ASN 120 A ASN 144 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 386 A ASN 410 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NDG . B NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale7 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale8 C O3 BMA . C BMA 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? metalc ? metalc1 A NE2 HIS 364 A HIS 388 1_555 H CO COH . A COH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'C34 H32 Co N4 O4' _chem_comp.formula_weight 619.575 _chem_comp.id COH _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING CO' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO NA COH sing 166 n n CO NB COH sing 167 n n CO NC COH sing 168 n n CO ND COH sing 169 n n CHA C1A COH doub 170 n n CHA C4D COH sing 171 n n CHA HHA COH sing 172 n n CHB C4A COH sing 173 n n CHB C1B COH doub 174 n n CHB HHB COH sing 175 n n CHC C4B COH doub 176 n n CHC C1C COH sing 177 n n CHC HHC COH sing 178 n n CHD C4C COH doub 179 n n CHD C1D COH sing 180 n n CHD HHD COH sing 181 n n NA C1A COH sing 182 n n NA C4A COH doub 183 n n C1A C2A COH sing 184 n n C2A C3A COH doub 185 n n C2A CAA COH sing 186 n n C3A C4A COH sing 187 n n C3A CMA COH sing 188 n n CMA HMA1 COH sing 189 n n CMA HMA2 COH sing 190 n n CMA HMA3 COH sing 191 n n CAA CBA COH sing 192 n n CAA HAA1 COH sing 193 n n CAA HAA2 COH sing 194 n n CBA CGA COH sing 195 n n CBA HBA1 COH sing 196 n n CBA HBA2 COH sing 197 n n CGA O1A COH doub 198 n n CGA O2A COH sing 199 n n O2A H2A COH sing 200 n n NB C1B COH sing 201 n n NB C4B COH sing 202 n n C1B C2B COH sing 203 n n C2B C3B COH doub 204 n n C2B CMB COH sing 205 n n C3B C4B COH sing 206 n n C3B CAB COH sing 207 n n CMB HMB1 COH sing 208 n n CMB HMB2 COH sing 209 n n CMB HMB3 COH sing 210 n n CAB CBB COH doub 211 n n CAB HAB COH sing 212 n n CBB HBB1 COH sing 213 n n CBB HBB2 COH sing 214 n n NC C1C COH doub 215 n n NC C4C COH sing 216 n n C1C C2C COH sing 217 n n C2C C3C COH doub 218 n n C2C CMC COH sing 219 n n C3C C4C COH sing 220 n n C3C CAC COH sing 221 n n CMC HMC1 COH sing 222 n n CMC HMC2 COH sing 223 n n CMC HMC3 COH sing 224 n n CAC CBC COH doub 225 n n CAC HAC COH sing 226 n n CBC HBC1 COH sing 227 n n CBC HBC2 COH sing 228 n n ND C1D COH sing 229 n y ND C4D COH sing 230 n y C1D C2D COH doub 231 n y C2D C3D COH sing 232 n y C2D CMD COH sing 233 n n C3D C4D COH doub 234 n y C3D CAD COH sing 235 n n CMD HMD1 COH sing 236 n n CMD HMD2 COH sing 237 n n CMD HMD3 COH sing 238 n n CAD CBD COH sing 239 n n CAD HAD1 COH sing 240 n n CAD HAD2 COH sing 241 n n CBD CGD COH sing 242 n n CBD HBD1 COH sing 243 n n CBD HBD2 COH sing 244 n n CGD O1D COH doub 245 n n CGD O2D COH sing 246 n n O2D H2D COH sing 247 n n # _atom_sites.entry_id 1IGX _atom_sites.fract_transf_matrix[1][1] 0.005489 _atom_sites.fract_transf_matrix[1][2] 0.003169 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 BOG A 1 750 750 BOG BOG . F 6 BGC A 1 751 751 BGC BGC . G 5 BOG A 1 752 752 BOG BOG . H 7 COH A 1 601 601 COH COH . I 8 EPA A 1 700 700 EPA EPA . J 9 HOH A 1 800 800 HOH HOH . J 9 HOH A 2 801 801 HOH HOH . J 9 HOH A 3 802 802 HOH HOH . J 9 HOH A 4 803 803 HOH HOH . J 9 HOH A 5 804 804 HOH HOH . J 9 HOH A 6 805 805 HOH HOH . J 9 HOH A 7 806 806 HOH HOH . J 9 HOH A 8 807 807 HOH HOH . J 9 HOH A 9 808 808 HOH HOH . J 9 HOH A 10 809 809 HOH HOH . J 9 HOH A 11 810 810 HOH HOH . J 9 HOH A 12 811 811 HOH HOH . J 9 HOH A 13 812 812 HOH HOH . J 9 HOH A 14 813 813 HOH HOH . J 9 HOH A 15 814 814 HOH HOH . J 9 HOH A 16 815 815 HOH HOH . J 9 HOH A 17 816 816 HOH HOH . J 9 HOH A 18 817 817 HOH HOH . J 9 HOH A 19 818 818 HOH HOH . J 9 HOH A 20 819 819 HOH HOH . J 9 HOH A 21 820 820 HOH HOH . J 9 HOH A 22 821 821 HOH HOH . J 9 HOH A 23 822 822 HOH HOH . J 9 HOH A 24 823 823 HOH HOH . J 9 HOH A 25 824 824 HOH HOH . J 9 HOH A 26 825 825 HOH HOH . J 9 HOH A 27 826 826 HOH HOH . J 9 HOH A 28 827 827 HOH HOH . J 9 HOH A 29 828 828 HOH HOH . J 9 HOH A 30 829 829 HOH HOH . J 9 HOH A 31 830 830 HOH HOH . J 9 HOH A 32 831 831 HOH HOH . J 9 HOH A 33 832 832 HOH HOH . J 9 HOH A 34 833 833 HOH HOH . J 9 HOH A 35 834 834 HOH HOH . J 9 HOH A 36 835 835 HOH HOH . J 9 HOH A 37 836 836 HOH HOH . J 9 HOH A 38 837 837 HOH HOH . J 9 HOH A 39 838 838 HOH HOH . J 9 HOH A 40 839 839 HOH HOH . J 9 HOH A 41 840 840 HOH HOH . J 9 HOH A 42 841 841 HOH HOH . J 9 HOH A 43 842 842 HOH HOH . J 9 HOH A 44 843 843 HOH HOH . J 9 HOH A 45 844 844 HOH HOH . J 9 HOH A 46 845 845 HOH HOH . J 9 HOH A 47 846 846 HOH HOH . J 9 HOH A 48 847 847 HOH HOH . J 9 HOH A 49 848 848 HOH HOH . J 9 HOH A 50 849 849 HOH HOH . J 9 HOH A 51 850 850 HOH HOH . J 9 HOH A 52 851 851 HOH HOH . J 9 HOH A 53 852 852 HOH HOH . J 9 HOH A 54 853 853 HOH HOH . J 9 HOH A 55 854 854 HOH HOH . J 9 HOH A 56 855 855 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO COH . . . H 7 242.345 90.498 -42.716 1 80.18 ? CO COH 601 A 1 HETATM 2 C CHA COH . . . H 7 239.345 90.697 -41.206 1 80.18 ? CHA COH 601 A 1 HETATM 3 C CHB COH . . . H 7 241.333 87.695 -44.423 1 80.18 ? CHB COH 601 A 1 HETATM 4 C CHC COH . . . H 7 245.346 90.252 -44.208 1 80.18 ? CHC COH 601 A 1 HETATM 5 C CHD COH . . . H 7 243.485 93.282 -40.998 1 80.18 ? CHD COH 601 A 1 HETATM 6 N NA COH . . . H 7 240.69 89.37 -42.846 1 80.18 ? NA COH 601 A 1 HETATM 7 C C1A COH . . . H 7 239.473 89.608 -42.114 1 80.18 ? C1A COH 601 A 1 HETATM 8 C C2A COH . . . H 7 238.407 88.526 -42.449 1 80.18 ? C2A COH 601 A 1 HETATM 9 C C3A COH . . . H 7 239.026 87.652 -43.413 1 80.18 ? C3A COH 601 A 1 HETATM 10 C C4A COH . . . H 7 240.438 88.256 -43.596 1 80.18 ? C4A COH 601 A 1 HETATM 11 C CMA COH . . . H 7 238.459 86.4 -44.107 1 80.18 ? CMA COH 601 A 1 HETATM 12 C CAA COH . . . H 7 236.902 88.292 -41.897 1 80.18 ? CAA COH 601 A 1 HETATM 13 C CBA COH . . . H 7 235.745 88.996 -42.66 1 80.18 ? CBA COH 601 A 1 HETATM 14 C CGA COH . . . H 7 235.811 90.54 -42.649 1 80.18 ? CGA COH 601 A 1 HETATM 15 O O1A COH . . . H 7 235.785 91.145 -41.526 1 80.18 ? O1A COH 601 A 1 HETATM 16 O O2A COH . . . H 7 235.848 91.163 -43.749 1 80.18 ? O2A COH 601 A 1 HETATM 17 N NB COH . . . H 7 243.129 89.249 -44.015 1 80.18 ? NB COH 601 A 1 HETATM 18 C C1B COH . . . H 7 242.595 88.119 -44.655 1 80.18 ? C1B COH 601 A 1 HETATM 19 C C2B COH . . . H 7 243.529 87.441 -45.583 1 80.18 ? C2B COH 601 A 1 HETATM 20 C C3B COH . . . H 7 244.68 88.168 -45.526 1 80.18 ? C3B COH 601 A 1 HETATM 21 C C4B COH . . . H 7 244.427 89.276 -44.562 1 80.18 ? C4B COH 601 A 1 HETATM 22 C CMB COH . . . H 7 243.239 86.21 -46.404 1 80.18 ? CMB COH 601 A 1 HETATM 23 C CAB COH . . . H 7 245.934 87.907 -46.275 1 80.18 ? CAB COH 601 A 1 HETATM 24 C CBB COH . . . H 7 246.701 86.755 -46.186 1 80.18 ? CBB COH 601 A 1 HETATM 25 N NC COH . . . H 7 244.047 91.592 -42.593 1 80.18 ? NC COH 601 A 1 HETATM 26 C C1C COH . . . H 7 245.192 91.308 -43.32 1 80.18 ? C1C COH 601 A 1 HETATM 27 C C2C COH . . . H 7 246.244 92.283 -43.023 1 80.18 ? C2C COH 601 A 1 HETATM 28 C C3C COH . . . H 7 245.694 93.157 -42.088 1 80.18 ? C3C COH 601 A 1 HETATM 29 C C4C COH . . . H 7 244.372 92.685 -41.872 1 80.18 ? C4C COH 601 A 1 HETATM 30 C CMC COH . . . H 7 247.673 92.33 -43.672 1 80.18 ? CMC COH 601 A 1 HETATM 31 C CAC COH . . . H 7 246.252 94.309 -41.431 1 80.18 ? CAC COH 601 A 1 HETATM 32 C CBC COH . . . H 7 246.573 95.573 -42.042 1 80.18 ? CBC COH 601 A 1 HETATM 33 N ND COH . . . H 7 241.628 91.754 -41.385 1 80.18 ? ND COH 601 A 1 HETATM 34 C C1D COH . . . H 7 242.155 92.836 -40.761 1 80.18 ? C1D COH 601 A 1 HETATM 35 C C2D COH . . . H 7 241.155 93.508 -39.781 1 80.18 ? C2D COH 601 A 1 HETATM 36 C C3D COH . . . H 7 240.02 92.754 -39.893 1 80.18 ? C3D COH 601 A 1 HETATM 37 C C4D COH . . . H 7 240.278 91.68 -40.844 1 80.18 ? C4D COH 601 A 1 HETATM 38 C CMD COH . . . H 7 241.521 94.747 -38.955 1 80.18 ? CMD COH 601 A 1 HETATM 39 C CAD COH . . . H 7 238.62 93.016 -39.241 1 80.18 ? CAD COH 601 A 1 HETATM 40 C CBD COH . . . H 7 238.269 92.23 -37.957 1 80.18 ? CBD COH 601 A 1 HETATM 41 C CGD COH . . . H 7 239.304 92.246 -36.857 1 80.18 ? CGD COH 601 A 1 HETATM 42 O O1D COH . . . H 7 240.199 91.346 -36.821 1 80.18 ? O1D COH 601 A 1 HETATM 43 O O2D COH . . . H 7 239.215 93.161 -36.021 1 80.18 ? O2D COH 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #