data_1IGX # _model_server_result.job_id UhjWSsm5rpHO4XzwkjTtBA _model_server_result.datetime_utc '2024-11-22 00:23:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1igx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":700}' # _entry.id 1IGX # _exptl.entry_id 1IGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.451 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,8,11,14,17-EICOSAPENTAENOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IGX _cell.length_a 182.17 _cell.length_b 182.17 _cell.length_c 103.11 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 273.255 -157.763848 -34.37 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing 5 ? 3 5 4 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 661 NAG 2 n B NDG 2 B 2 NDG B 662 NAG 3 n C NAG 1 C 1 NAG C 671 NAG 3 n C NAG 2 C 2 NAG C 672 NAG 3 n C BMA 3 C 3 BMA C 673 BMA 3 n C BMA 4 C 4 BMA C 674 BMA 3 n C MAN 5 C 5 MAN C 675 BMA 4 n D NAG 1 D 1 NAG D 681 NAG 4 n D NAG 2 D 2 NAG D 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 36 1_555 A SG CYS 23 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 13 A CYS 37 1_555 A SG CYS 135 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 17 A CYS 41 1_555 A SG CYS 33 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 35 A CYS 59 1_555 A SG CYS 45 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 545 A CYS 569 1_555 A SG CYS 551 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 44 A ASN 68 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale2 A ND2 ASN 120 A ASN 144 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 386 A ASN 410 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NDG . B NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale7 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale8 C O3 BMA . C BMA 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? metalc ? metalc1 A NE2 HIS 364 A HIS 388 1_555 H CO COH . A COH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'C20 H30 O2' _chem_comp.formula_weight 302.451 _chem_comp.id EPA _chem_comp.mon_nstd_flag . _chem_comp.name '5,8,11,14,17-EICOSAPENTAENOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 OA EPA sing 261 n n C1 OB EPA doub 262 n n C1 C2 EPA sing 263 n n OA HOA EPA sing 264 n n C2 C3 EPA sing 265 n n C2 H21 EPA sing 266 n n C2 H22 EPA sing 267 n n C3 C4 EPA sing 268 n n C3 H31 EPA sing 269 n n C3 H32 EPA sing 270 n n C4 C5 EPA sing 271 n n C4 H41 EPA sing 272 n n C4 H42 EPA sing 273 n n C5 C6 EPA doub 274 z n C5 H51 EPA sing 275 n n C6 C7 EPA sing 276 n n C6 H61 EPA sing 277 n n C7 C8 EPA sing 278 n n C7 H71 EPA sing 279 n n C7 H72 EPA sing 280 n n C8 C9 EPA doub 281 z n C8 H81 EPA sing 282 n n C9 C10 EPA sing 283 n n C9 H91 EPA sing 284 n n C10 C11 EPA sing 285 n n C10 H101 EPA sing 286 n n C10 H102 EPA sing 287 n n C11 C12 EPA doub 288 z n C11 H111 EPA sing 289 n n C12 C13 EPA sing 290 n n C12 H121 EPA sing 291 n n C13 C14 EPA sing 292 n n C13 H131 EPA sing 293 n n C13 H132 EPA sing 294 n n C14 C15 EPA doub 295 z n C14 H141 EPA sing 296 n n C15 C16 EPA sing 297 n n C15 H151 EPA sing 298 n n C16 C17 EPA sing 299 n n C16 H161 EPA sing 300 n n C16 H162 EPA sing 301 n n C17 C18 EPA doub 302 z n C17 H171 EPA sing 303 n n C18 C19 EPA sing 304 n n C18 H181 EPA sing 305 n n C19 C20 EPA sing 306 n n C19 H191 EPA sing 307 n n C19 H192 EPA sing 308 n n C20 H201 EPA sing 309 n n C20 H202 EPA sing 310 n n C20 H203 EPA sing 311 n n # _atom_sites.entry_id 1IGX _atom_sites.fract_transf_matrix[1][1] 0.005489 _atom_sites.fract_transf_matrix[1][2] 0.003169 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 BOG A 1 750 750 BOG BOG . F 6 BGC A 1 751 751 BGC BGC . G 5 BOG A 1 752 752 BOG BOG . H 7 COH A 1 601 601 COH COH . I 8 EPA A 1 700 700 EPA EPA . J 9 HOH A 1 800 800 HOH HOH . J 9 HOH A 2 801 801 HOH HOH . J 9 HOH A 3 802 802 HOH HOH . J 9 HOH A 4 803 803 HOH HOH . J 9 HOH A 5 804 804 HOH HOH . J 9 HOH A 6 805 805 HOH HOH . J 9 HOH A 7 806 806 HOH HOH . J 9 HOH A 8 807 807 HOH HOH . J 9 HOH A 9 808 808 HOH HOH . J 9 HOH A 10 809 809 HOH HOH . J 9 HOH A 11 810 810 HOH HOH . J 9 HOH A 12 811 811 HOH HOH . J 9 HOH A 13 812 812 HOH HOH . J 9 HOH A 14 813 813 HOH HOH . J 9 HOH A 15 814 814 HOH HOH . J 9 HOH A 16 815 815 HOH HOH . J 9 HOH A 17 816 816 HOH HOH . J 9 HOH A 18 817 817 HOH HOH . J 9 HOH A 19 818 818 HOH HOH . J 9 HOH A 20 819 819 HOH HOH . J 9 HOH A 21 820 820 HOH HOH . J 9 HOH A 22 821 821 HOH HOH . J 9 HOH A 23 822 822 HOH HOH . J 9 HOH A 24 823 823 HOH HOH . J 9 HOH A 25 824 824 HOH HOH . J 9 HOH A 26 825 825 HOH HOH . J 9 HOH A 27 826 826 HOH HOH . J 9 HOH A 28 827 827 HOH HOH . J 9 HOH A 29 828 828 HOH HOH . J 9 HOH A 30 829 829 HOH HOH . J 9 HOH A 31 830 830 HOH HOH . J 9 HOH A 32 831 831 HOH HOH . J 9 HOH A 33 832 832 HOH HOH . J 9 HOH A 34 833 833 HOH HOH . J 9 HOH A 35 834 834 HOH HOH . J 9 HOH A 36 835 835 HOH HOH . J 9 HOH A 37 836 836 HOH HOH . J 9 HOH A 38 837 837 HOH HOH . J 9 HOH A 39 838 838 HOH HOH . J 9 HOH A 40 839 839 HOH HOH . J 9 HOH A 41 840 840 HOH HOH . J 9 HOH A 42 841 841 HOH HOH . J 9 HOH A 43 842 842 HOH HOH . J 9 HOH A 44 843 843 HOH HOH . J 9 HOH A 45 844 844 HOH HOH . J 9 HOH A 46 845 845 HOH HOH . J 9 HOH A 47 846 846 HOH HOH . J 9 HOH A 48 847 847 HOH HOH . J 9 HOH A 49 848 848 HOH HOH . J 9 HOH A 50 849 849 HOH HOH . J 9 HOH A 51 850 850 HOH HOH . J 9 HOH A 52 851 851 HOH HOH . J 9 HOH A 53 852 852 HOH HOH . J 9 HOH A 54 853 853 HOH HOH . J 9 HOH A 55 854 854 HOH HOH . J 9 HOH A 56 855 855 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPA . . . I 8 253.567 111.037 -37.073 1 51 ? C1 EPA 700 A 1 HETATM 2 O OA EPA . . . I 8 253.312 111.447 -35.912 1 51 ? OA EPA 700 A 1 HETATM 3 O OB EPA . . . I 8 253.157 111.604 -38.117 1 51 ? OB EPA 700 A 1 HETATM 4 C C2 EPA . . . I 8 254.413 109.783 -37.225 1 51 ? C2 EPA 700 A 1 HETATM 5 C C3 EPA . . . I 8 253.571 108.591 -37.607 1 51 ? C3 EPA 700 A 1 HETATM 6 C C4 EPA . . . I 8 252.842 108.825 -38.906 1 51 ? C4 EPA 700 A 1 HETATM 7 C C5 EPA . . . I 8 253.362 108.256 -40.134 1 51 ? C5 EPA 700 A 1 HETATM 8 C C6 EPA . . . I 8 252.785 107.134 -40.675 1 51 ? C6 EPA 700 A 1 HETATM 9 C C7 EPA . . . I 8 251.62 106.489 -40.015 1 51 ? C7 EPA 700 A 1 HETATM 10 C C8 EPA . . . I 8 250.269 107.029 -40.307 1 51 ? C8 EPA 700 A 1 HETATM 11 C C9 EPA . . . I 8 249.186 106.58 -39.616 1 51 ? C9 EPA 700 A 1 HETATM 12 C C10 EPA . . . I 8 249.347 105.514 -38.537 1 51 ? C10 EPA 700 A 1 HETATM 13 C C11 EPA . . . I 8 248.5 104.243 -38.64 1 51 ? C11 EPA 700 A 1 HETATM 14 C C12 EPA . . . I 8 248.836 103.123 -37.933 1 51 ? C12 EPA 700 A 1 HETATM 15 C C13 EPA . . . I 8 250.021 103.119 -37.068 1 51 ? C13 EPA 700 A 1 HETATM 16 C C14 EPA . . . I 8 250.871 101.893 -37.035 1 51 ? C14 EPA 700 A 1 HETATM 17 C C15 EPA . . . I 8 251.122 101.217 -35.861 1 51 ? C15 EPA 700 A 1 HETATM 18 C C16 EPA . . . I 8 250.567 101.689 -34.567 1 51 ? C16 EPA 700 A 1 HETATM 19 C C17 EPA . . . I 8 249.129 101.859 -34.449 1 51 ? C17 EPA 700 A 1 HETATM 20 C C18 EPA . . . I 8 248.492 101.557 -33.271 1 51 ? C18 EPA 700 A 1 HETATM 21 C C19 EPA . . . I 8 249.268 101.033 -32.056 1 51 ? C19 EPA 700 A 1 HETATM 22 C C20 EPA . . . I 8 248.458 101.156 -30.781 1 51 ? C20 EPA 700 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 22 #