data_1IGZ # _model_server_result.job_id UKQHI8fLXzw69239Z9DMWw _model_server_result.datetime_utc '2024-11-28 10:06:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1igz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":750}' # _entry.id 1IGZ # _exptl.entry_id 1IGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IGZ _cell.length_a 182.05 _cell.length_b 182.05 _cell.length_c 103.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 273.075 -157.659925 -34.55 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing 5 ? 3 5 4 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 661 NAG 2 n B NDG 2 B 2 NDG B 662 NAG 3 n C NAG 1 C 1 NAG C 671 NAG 3 n C NAG 2 C 2 NAG C 672 NAG 3 n C BMA 3 C 3 BMA C 673 BMA 3 n C BMA 4 C 4 BMA C 674 BMA 3 n C MAN 5 C 5 MAN C 675 BMA 4 n D NAG 1 D 1 NAG D 681 NAG 4 n D NAG 2 D 2 NAG D 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 36 1_555 A SG CYS 23 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 13 A CYS 37 1_555 A SG CYS 135 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 17 A CYS 41 1_555 A SG CYS 33 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 35 A CYS 59 1_555 A SG CYS 45 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 545 A CYS 569 1_555 A SG CYS 551 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 44 A ASN 68 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 120 A ASN 144 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 A ND2 ASN 386 A ASN 410 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NDG . B NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale7 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale8 C O3 BMA . C BMA 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? metalc ? metalc1 A NE2 HIS 364 A HIS 388 1_555 H CO COH . A COH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 70 n n C2 C1 BGC sing 71 n n C2 O2 BGC sing 72 n n C2 H2 BGC sing 73 n n C3 C4 BGC sing 74 n n C3 O3 BGC sing 75 n n C3 H3 BGC sing 76 n n C4 C5 BGC sing 77 n n C4 O4 BGC sing 78 n n C4 H4 BGC sing 79 n n C5 C6 BGC sing 80 n n C5 O5 BGC sing 81 n n C5 H5 BGC sing 82 n n C6 O6 BGC sing 83 n n C6 H61 BGC sing 84 n n C6 H62 BGC sing 85 n n C1 O1 BGC sing 86 n n C1 O5 BGC sing 87 n n C1 H1 BGC sing 88 n n O1 HO1 BGC sing 89 n n O2 HO2 BGC sing 90 n n O3 HO3 BGC sing 91 n n O4 HO4 BGC sing 92 n n O6 HO6 BGC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1IGZ _atom_sites.fract_transf_matrix[1][1] 0.005493 _atom_sites.fract_transf_matrix[1][2] 0.003171 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 BGC A 1 750 750 BGC BGC . F 6 BOG A 1 751 751 BOG BOG . G 6 BOG A 1 752 752 BOG BOG . H 7 COH A 1 601 601 COH COH . I 8 EIC A 1 700 700 EIC EIC . J 9 HOH A 1 800 800 HOH HOH . J 9 HOH A 2 801 801 HOH HOH . J 9 HOH A 3 802 802 HOH HOH . J 9 HOH A 4 803 803 HOH HOH . J 9 HOH A 5 804 804 HOH HOH . J 9 HOH A 6 805 805 HOH HOH . J 9 HOH A 7 806 806 HOH HOH . J 9 HOH A 8 807 807 HOH HOH . J 9 HOH A 9 808 808 HOH HOH . J 9 HOH A 10 809 809 HOH HOH . J 9 HOH A 11 810 810 HOH HOH . J 9 HOH A 12 811 811 HOH HOH . J 9 HOH A 13 812 812 HOH HOH . J 9 HOH A 14 813 813 HOH HOH . J 9 HOH A 15 814 814 HOH HOH . J 9 HOH A 16 815 815 HOH HOH . J 9 HOH A 17 816 816 HOH HOH . J 9 HOH A 18 817 817 HOH HOH . J 9 HOH A 19 818 818 HOH HOH . J 9 HOH A 20 819 819 HOH HOH . J 9 HOH A 21 820 820 HOH HOH . J 9 HOH A 22 821 821 HOH HOH . J 9 HOH A 23 822 822 HOH HOH . J 9 HOH A 24 823 823 HOH HOH . J 9 HOH A 25 824 824 HOH HOH . J 9 HOH A 26 825 825 HOH HOH . J 9 HOH A 27 826 826 HOH HOH . J 9 HOH A 28 827 827 HOH HOH . J 9 HOH A 29 828 828 HOH HOH . J 9 HOH A 30 829 829 HOH HOH . J 9 HOH A 31 830 830 HOH HOH . J 9 HOH A 32 831 831 HOH HOH . J 9 HOH A 33 832 832 HOH HOH . J 9 HOH A 34 833 833 HOH HOH . J 9 HOH A 35 834 834 HOH HOH . J 9 HOH A 36 835 835 HOH HOH . J 9 HOH A 37 836 836 HOH HOH . J 9 HOH A 38 837 837 HOH HOH . J 9 HOH A 39 838 838 HOH HOH . J 9 HOH A 40 839 839 HOH HOH . J 9 HOH A 41 840 840 HOH HOH . J 9 HOH A 42 841 841 HOH HOH . J 9 HOH A 43 842 842 HOH HOH . J 9 HOH A 44 843 843 HOH HOH . J 9 HOH A 45 844 844 HOH HOH . J 9 HOH A 46 845 845 HOH HOH . J 9 HOH A 47 846 846 HOH HOH . J 9 HOH A 48 847 847 HOH HOH . J 9 HOH A 49 848 848 HOH HOH . J 9 HOH A 50 849 849 HOH HOH . J 9 HOH A 51 850 850 HOH HOH . J 9 HOH A 52 851 851 HOH HOH . J 9 HOH A 53 852 852 HOH HOH . J 9 HOH A 54 853 853 HOH HOH . J 9 HOH A 55 854 854 HOH HOH . J 9 HOH A 56 855 855 HOH HOH . J 9 HOH A 57 856 856 HOH HOH . J 9 HOH A 58 857 857 HOH HOH . J 9 HOH A 59 858 858 HOH HOH . J 9 HOH A 60 859 859 HOH HOH . J 9 HOH A 61 860 860 HOH HOH . J 9 HOH A 62 861 861 HOH HOH . J 9 HOH A 63 862 862 HOH HOH . J 9 HOH A 64 863 863 HOH HOH . J 9 HOH A 65 864 864 HOH HOH . J 9 HOH A 66 865 865 HOH HOH . J 9 HOH A 67 866 866 HOH HOH . J 9 HOH A 68 867 867 HOH HOH . J 9 HOH A 69 868 868 HOH HOH . J 9 HOH A 70 869 869 HOH HOH . J 9 HOH A 71 870 870 HOH HOH . J 9 HOH A 72 871 871 HOH HOH . J 9 HOH A 73 872 872 HOH HOH . J 9 HOH A 74 873 873 HOH HOH . J 9 HOH A 75 874 874 HOH HOH . J 9 HOH A 76 875 875 HOH HOH . J 9 HOH A 77 876 876 HOH HOH . J 9 HOH A 78 877 877 HOH HOH . J 9 HOH A 79 878 878 HOH HOH . J 9 HOH A 80 879 879 HOH HOH . J 9 HOH A 81 880 880 HOH HOH . J 9 HOH A 82 881 881 HOH HOH . J 9 HOH A 83 882 882 HOH HOH . J 9 HOH A 84 883 883 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . E 5 254.395 122.815 -50.688 1 82.38 ? C2 BGC 750 A 1 HETATM 2 C C3 BGC . . . E 5 254.402 121.805 -51.844 1 82.38 ? C3 BGC 750 A 1 HETATM 3 C C4 BGC . . . E 5 253.243 120.819 -51.692 1 82.38 ? C4 BGC 750 A 1 HETATM 4 C C5 BGC . . . E 5 251.948 121.636 -51.686 1 82.38 ? C5 BGC 750 A 1 HETATM 5 C C6 BGC . . . E 5 250.682 120.804 -51.644 1 82.38 ? C6 BGC 750 A 1 HETATM 6 C C1 BGC . . . E 5 253.002 123.492 -50.565 1 82.38 ? C1 BGC 750 A 1 HETATM 7 O O1 BGC . . . E 5 252.933 124.243 -49.395 1 82.38 ? O1 BGC 750 A 1 HETATM 8 O O2 BGC . . . E 5 255.407 123.797 -50.911 1 82.38 ? O2 BGC 750 A 1 HETATM 9 O O3 BGC . . . E 5 255.624 121.094 -51.848 1 82.38 ? O3 BGC 750 A 1 HETATM 10 O O4 BGC . . . E 5 253.252 119.871 -52.759 1 82.38 ? O4 BGC 750 A 1 HETATM 11 O O5 BGC . . . E 5 251.942 122.504 -50.527 1 82.38 ? O5 BGC 750 A 1 HETATM 12 O O6 BGC . . . E 5 250.991 119.419 -51.569 1 82.38 ? O6 BGC 750 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #