data_1IHY
#
_model_server_result.job_id            9zjoMez7p4xfImgR8jMuww 
_model_server_result.datetime_utc      '2024-12-01 18:03:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ihy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":337}' 
#
_entry.id    1IHY 
#
_exptl.entry_id    1IHY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.28 
_cell.angle_gamma         90 
_cell.entry_id            1IHY 
_cell.length_a            152.8 
_cell.length_b            100.35 
_cell.length_c            128.31 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IHY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
? 3 M N N 
? 3 P N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     1IHY 
_atom_sites.fract_transf_matrix[1][1]    0.006545 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002418 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008309 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 501 501 SO4 SO4 . 
F 2 SO4 A 1 505 505 SO4 SO4 . 
G 3 APR A 1 335 335 APR ADR . 
H 2 SO4 B 1 502 502 SO4 SO4 . 
I 2 SO4 B 1 506 506 SO4 SO4 . 
J 3 APR B 1 336 336 APR ADR . 
K 2 SO4 C 1 504 504 SO4 SO4 . 
L 2 SO4 C 1 508 508 SO4 SO4 . 
M 3 APR C 1 338 338 APR ADR . 
N 2 SO4 D 1 503 503 SO4 SO4 . 
O 2 SO4 D 1 507 507 SO4 SO4 . 
P 3 APR D 1 337 337 APR ADR . 
Q 4 HOH A 1 506 1 HOH HOH . 
Q 4 HOH A 2 507 4 HOH HOH . 
Q 4 HOH A 3 508 6 HOH HOH . 
Q 4 HOH A 4 509 7 HOH HOH . 
Q 4 HOH A 5 510 16 HOH HOH . 
Q 4 HOH A 6 511 18 HOH HOH . 
Q 4 HOH A 7 512 19 HOH HOH . 
Q 4 HOH A 8 513 38 HOH HOH . 
Q 4 HOH A 9 514 50 HOH HOH . 
Q 4 HOH A 10 515 51 HOH HOH . 
Q 4 HOH A 11 516 52 HOH HOH . 
Q 4 HOH A 12 517 53 HOH HOH . 
Q 4 HOH A 13 518 54 HOH HOH . 
Q 4 HOH A 14 519 55 HOH HOH . 
Q 4 HOH A 15 520 56 HOH HOH . 
Q 4 HOH A 16 521 57 HOH HOH . 
Q 4 HOH A 17 522 58 HOH HOH . 
Q 4 HOH A 18 523 59 HOH HOH . 
Q 4 HOH A 19 524 60 HOH HOH . 
R 4 HOH B 1 507 3 HOH HOH . 
R 4 HOH B 2 508 5 HOH HOH . 
R 4 HOH B 3 509 8 HOH HOH . 
R 4 HOH B 4 510 15 HOH HOH . 
R 4 HOH B 5 511 20 HOH HOH . 
R 4 HOH B 6 512 21 HOH HOH . 
R 4 HOH B 7 513 23 HOH HOH . 
R 4 HOH B 8 514 24 HOH HOH . 
R 4 HOH B 9 515 61 HOH HOH . 
R 4 HOH B 10 516 62 HOH HOH . 
R 4 HOH B 11 517 63 HOH HOH . 
R 4 HOH B 12 518 64 HOH HOH . 
R 4 HOH B 13 519 65 HOH HOH . 
R 4 HOH B 14 520 66 HOH HOH . 
R 4 HOH B 15 521 67 HOH HOH . 
R 4 HOH B 16 522 68 HOH HOH . 
R 4 HOH B 17 523 69 HOH HOH . 
R 4 HOH B 18 524 70 HOH HOH . 
R 4 HOH B 19 525 71 HOH HOH . 
R 4 HOH B 20 526 74 HOH HOH . 
R 4 HOH B 21 527 75 HOH HOH . 
R 4 HOH B 22 528 76 HOH HOH . 
R 4 HOH B 23 529 77 HOH HOH . 
R 4 HOH B 24 530 84 HOH HOH . 
S 4 HOH C 1 509 9 HOH HOH . 
S 4 HOH C 2 510 17 HOH HOH . 
S 4 HOH C 3 511 22 HOH HOH . 
S 4 HOH C 4 512 37 HOH HOH . 
S 4 HOH C 5 513 39 HOH HOH . 
S 4 HOH C 6 514 40 HOH HOH . 
S 4 HOH C 7 515 41 HOH HOH . 
S 4 HOH C 8 516 42 HOH HOH . 
S 4 HOH C 9 517 43 HOH HOH . 
S 4 HOH C 10 518 44 HOH HOH . 
S 4 HOH C 11 519 45 HOH HOH . 
S 4 HOH C 12 520 46 HOH HOH . 
S 4 HOH C 13 521 47 HOH HOH . 
S 4 HOH C 14 522 48 HOH HOH . 
S 4 HOH C 15 523 49 HOH HOH . 
S 4 HOH C 16 524 73 HOH HOH . 
S 4 HOH C 17 525 81 HOH HOH . 
S 4 HOH C 18 526 82 HOH HOH . 
T 4 HOH D 1 508 2 HOH HOH . 
T 4 HOH D 2 509 10 HOH HOH . 
T 4 HOH D 3 510 11 HOH HOH . 
T 4 HOH D 4 511 12 HOH HOH . 
T 4 HOH D 5 512 13 HOH HOH . 
T 4 HOH D 6 513 14 HOH HOH . 
T 4 HOH D 7 514 25 HOH HOH . 
T 4 HOH D 8 515 26 HOH HOH . 
T 4 HOH D 9 516 27 HOH HOH . 
T 4 HOH D 10 517 28 HOH HOH . 
T 4 HOH D 11 518 29 HOH HOH . 
T 4 HOH D 12 519 30 HOH HOH . 
T 4 HOH D 13 520 31 HOH HOH . 
T 4 HOH D 14 521 32 HOH HOH . 
T 4 HOH D 15 522 33 HOH HOH . 
T 4 HOH D 16 523 34 HOH HOH . 
T 4 HOH D 17 524 35 HOH HOH . 
T 4 HOH D 18 525 36 HOH HOH . 
T 4 HOH D 19 526 72 HOH HOH . 
T 4 HOH D 20 527 78 HOH HOH . 
T 4 HOH D 21 528 79 HOH HOH . 
T 4 HOH D 22 529 80 HOH HOH . 
T 4 HOH D 23 530 83 HOH HOH . 
T 4 HOH D 24 531 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . P 3 0.214 -14.463 22.964 1 79.68 ? N1 APR 337 D 1 
HETATM 2 C C2 APR . . . P 3 1.445 -15.084 22.872 1 79.38 ? C2 APR 337 D 1 
HETATM 3 N N3 APR . . . P 3 2.639 -14.516 22.919 1 79.67 ? N3 APR 337 D 1 
HETATM 4 C C4 APR . . . P 3 2.562 -13.151 23.097 1 80.92 ? C4 APR 337 D 1 
HETATM 5 C C5 APR . . . P 3 1.413 -12.373 23.21 1 80.63 ? C5 APR 337 D 1 
HETATM 6 C C6 APR . . . P 3 0.171 -13.081 23.142 1 80.37 ? C6 APR 337 D 1 
HETATM 7 N N6 APR . . . P 3 -1.013 -12.486 23.231 1 80.92 ? N6 APR 337 D 1 
HETATM 8 N N7 APR . . . P 3 1.738 -11.029 23.378 1 81.42 ? N7 APR 337 D 1 
HETATM 9 C C8 APR . . . P 3 3.08 -11.005 23.357 1 82.39 ? C8 APR 337 D 1 
HETATM 10 N N9 APR . . . P 3 3.623 -12.257 23.186 1 83.16 ? N9 APR 337 D 1 
HETATM 11 C C1' APR . . . P 3 5.037 -12.688 23.099 1 86 ? C1' APR 337 D 1 
HETATM 12 C C2' APR . . . P 3 5.907 -11.71 22.33 1 86.79 ? C2' APR 337 D 1 
HETATM 13 O O2' APR . . . P 3 5.982 -12.064 20.943 1 86.59 ? O2' APR 337 D 1 
HETATM 14 C C3' APR . . . P 3 7.268 -11.746 23.019 1 88.07 ? C3' APR 337 D 1 
HETATM 15 O O3' APR . . . P 3 8.302 -12.493 22.366 1 87.16 ? O3' APR 337 D 1 
HETATM 16 O O4' APR . . . P 3 5.605 -12.805 24.37 1 88.93 ? O4' APR 337 D 1 
HETATM 17 C C4' APR . . . P 3 6.958 -12.279 24.412 1 90.15 ? C4' APR 337 D 1 
HETATM 18 C C5' APR . . . P 3 7.026 -11.254 25.537 1 94.1 ? C5' APR 337 D 1 
HETATM 19 O O5' APR . . . P 3 8.178 -11.529 26.386 1 99.82 ? O5' APR 337 D 1 
HETATM 20 P PA APR . . . P 3 9.25 -10.347 26.758 1 103.1 ? PA APR 337 D 1 
HETATM 21 O O1A APR . . . P 3 8.622 -9.002 26.632 1 102.87 ? O1A APR 337 D 1 
HETATM 22 O O2A APR . . . P 3 10.439 -10.424 25.863 1 103.32 ? O2A APR 337 D 1 
HETATM 23 O O3A APR . . . P 3 9.627 -10.711 28.234 1 103.19 ? O3A APR 337 D 1 
HETATM 24 P PB APR . . . P 3 9.281 -12.003 29.233 1 103.32 ? PB APR 337 D 1 
HETATM 25 O O1B APR . . . P 3 7.937 -11.831 29.861 1 103.32 ? O1B APR 337 D 1 
HETATM 26 O O2B APR . . . P 3 9.346 -13.296 28.493 1 103.32 ? O2B APR 337 D 1 
HETATM 27 O O5D APR . . . P 3 10.44 -11.853 30.266 1 103.32 ? O5D APR 337 D 1 
HETATM 28 C C5D APR . . . P 3 10.42 -10.655 30.999 1 103.32 ? C5D APR 337 D 1 
HETATM 29 O O4D APR . . . P 3 12.801 -10.694 31.22 1 103.32 ? O4D APR 337 D 1 
HETATM 30 O O1D APR . . . P 3 14.312 -9.122 30.303 1 103.05 ? O1D APR 337 D 1 
HETATM 31 C C1D APR . . . P 3 13.6 -9.575 31.515 1 103.32 ? C1D APR 337 D 1 
HETATM 32 O O2D APR . . . P 3 13.216 -7.58 32.931 1 103.32 ? O2D APR 337 D 1 
HETATM 33 C C2D APR . . . P 3 12.624 -8.534 32.038 1 103.32 ? C2D APR 337 D 1 
HETATM 34 O O3D APR . . . P 3 11.739 -9.489 34.191 1 103.08 ? O3D APR 337 D 1 
HETATM 35 C C3D APR . . . P 3 11.53 -9.34 32.76 1 103.32 ? C3D APR 337 D 1 
HETATM 36 C C4D APR . . . P 3 11.54 -10.612 31.952 1 103.32 ? C4D APR 337 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#