data_1IHY # _model_server_result.job_id cKy1qW7hp2zdBuK1ccXm8Q _model_server_result.datetime_utc '2024-10-10 23:30:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ihy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":338}' # _entry.id 1IHY # _exptl.entry_id 1IHY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.28 _cell.angle_gamma 90 _cell.entry_id 1IHY _cell.length_a 152.8 _cell.length_b 100.35 _cell.length_c 128.31 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IHY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 M N N ? 3 P N N # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 1IHY _atom_sites.fract_transf_matrix[1][1] 0.006545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002418 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 501 501 SO4 SO4 . F 2 SO4 A 1 505 505 SO4 SO4 . G 3 APR A 1 335 335 APR ADR . H 2 SO4 B 1 502 502 SO4 SO4 . I 2 SO4 B 1 506 506 SO4 SO4 . J 3 APR B 1 336 336 APR ADR . K 2 SO4 C 1 504 504 SO4 SO4 . L 2 SO4 C 1 508 508 SO4 SO4 . M 3 APR C 1 338 338 APR ADR . N 2 SO4 D 1 503 503 SO4 SO4 . O 2 SO4 D 1 507 507 SO4 SO4 . P 3 APR D 1 337 337 APR ADR . Q 4 HOH A 1 506 1 HOH HOH . Q 4 HOH A 2 507 4 HOH HOH . Q 4 HOH A 3 508 6 HOH HOH . Q 4 HOH A 4 509 7 HOH HOH . Q 4 HOH A 5 510 16 HOH HOH . Q 4 HOH A 6 511 18 HOH HOH . Q 4 HOH A 7 512 19 HOH HOH . Q 4 HOH A 8 513 38 HOH HOH . Q 4 HOH A 9 514 50 HOH HOH . Q 4 HOH A 10 515 51 HOH HOH . Q 4 HOH A 11 516 52 HOH HOH . Q 4 HOH A 12 517 53 HOH HOH . Q 4 HOH A 13 518 54 HOH HOH . Q 4 HOH A 14 519 55 HOH HOH . Q 4 HOH A 15 520 56 HOH HOH . Q 4 HOH A 16 521 57 HOH HOH . Q 4 HOH A 17 522 58 HOH HOH . Q 4 HOH A 18 523 59 HOH HOH . Q 4 HOH A 19 524 60 HOH HOH . R 4 HOH B 1 507 3 HOH HOH . R 4 HOH B 2 508 5 HOH HOH . R 4 HOH B 3 509 8 HOH HOH . R 4 HOH B 4 510 15 HOH HOH . R 4 HOH B 5 511 20 HOH HOH . R 4 HOH B 6 512 21 HOH HOH . R 4 HOH B 7 513 23 HOH HOH . R 4 HOH B 8 514 24 HOH HOH . R 4 HOH B 9 515 61 HOH HOH . R 4 HOH B 10 516 62 HOH HOH . R 4 HOH B 11 517 63 HOH HOH . R 4 HOH B 12 518 64 HOH HOH . R 4 HOH B 13 519 65 HOH HOH . R 4 HOH B 14 520 66 HOH HOH . R 4 HOH B 15 521 67 HOH HOH . R 4 HOH B 16 522 68 HOH HOH . R 4 HOH B 17 523 69 HOH HOH . R 4 HOH B 18 524 70 HOH HOH . R 4 HOH B 19 525 71 HOH HOH . R 4 HOH B 20 526 74 HOH HOH . R 4 HOH B 21 527 75 HOH HOH . R 4 HOH B 22 528 76 HOH HOH . R 4 HOH B 23 529 77 HOH HOH . R 4 HOH B 24 530 84 HOH HOH . S 4 HOH C 1 509 9 HOH HOH . S 4 HOH C 2 510 17 HOH HOH . S 4 HOH C 3 511 22 HOH HOH . S 4 HOH C 4 512 37 HOH HOH . S 4 HOH C 5 513 39 HOH HOH . S 4 HOH C 6 514 40 HOH HOH . S 4 HOH C 7 515 41 HOH HOH . S 4 HOH C 8 516 42 HOH HOH . S 4 HOH C 9 517 43 HOH HOH . S 4 HOH C 10 518 44 HOH HOH . S 4 HOH C 11 519 45 HOH HOH . S 4 HOH C 12 520 46 HOH HOH . S 4 HOH C 13 521 47 HOH HOH . S 4 HOH C 14 522 48 HOH HOH . S 4 HOH C 15 523 49 HOH HOH . S 4 HOH C 16 524 73 HOH HOH . S 4 HOH C 17 525 81 HOH HOH . S 4 HOH C 18 526 82 HOH HOH . T 4 HOH D 1 508 2 HOH HOH . T 4 HOH D 2 509 10 HOH HOH . T 4 HOH D 3 510 11 HOH HOH . T 4 HOH D 4 511 12 HOH HOH . T 4 HOH D 5 512 13 HOH HOH . T 4 HOH D 6 513 14 HOH HOH . T 4 HOH D 7 514 25 HOH HOH . T 4 HOH D 8 515 26 HOH HOH . T 4 HOH D 9 516 27 HOH HOH . T 4 HOH D 10 517 28 HOH HOH . T 4 HOH D 11 518 29 HOH HOH . T 4 HOH D 12 519 30 HOH HOH . T 4 HOH D 13 520 31 HOH HOH . T 4 HOH D 14 521 32 HOH HOH . T 4 HOH D 15 522 33 HOH HOH . T 4 HOH D 16 523 34 HOH HOH . T 4 HOH D 17 524 35 HOH HOH . T 4 HOH D 18 525 36 HOH HOH . T 4 HOH D 19 526 72 HOH HOH . T 4 HOH D 20 527 78 HOH HOH . T 4 HOH D 21 528 79 HOH HOH . T 4 HOH D 22 529 80 HOH HOH . T 4 HOH D 23 530 83 HOH HOH . T 4 HOH D 24 531 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . M 3 58.038 -10.185 37.958 1 67.72 ? N1 APR 338 C 1 HETATM 2 C C2 APR . . . M 3 56.914 -10.985 37.994 1 68.63 ? C2 APR 338 C 1 HETATM 3 N N3 APR . . . M 3 55.655 -10.61 37.881 1 69.37 ? N3 APR 338 C 1 HETATM 4 C C4 APR . . . M 3 55.529 -9.249 37.712 1 70.6 ? C4 APR 338 C 1 HETATM 5 C C5 APR . . . M 3 56.547 -8.311 37.65 1 69.54 ? C5 APR 338 C 1 HETATM 6 C C6 APR . . . M 3 57.881 -8.823 37.784 1 68.5 ? C6 APR 338 C 1 HETATM 7 N N6 APR . . . M 3 58.967 -8.059 37.75 1 67.91 ? N6 APR 338 C 1 HETATM 8 N N7 APR . . . M 3 56.028 -7.036 37.464 1 70.78 ? N7 APR 338 C 1 HETATM 9 C C8 APR . . . M 3 54.702 -7.213 37.421 1 72.12 ? C8 APR 338 C 1 HETATM 10 N N9 APR . . . M 3 54.347 -8.526 37.566 1 73.33 ? N9 APR 338 C 1 HETATM 11 C C1' APR . . . M 3 53.008 -9.162 37.593 1 76.86 ? C1' APR 338 C 1 HETATM 12 C C2' APR . . . M 3 51.995 -8.329 38.345 1 78.06 ? C2' APR 338 C 1 HETATM 13 O O2' APR . . . M 3 51.952 -8.721 39.718 1 77.56 ? O2' APR 338 C 1 HETATM 14 C C3' APR . . . M 3 50.666 -8.545 37.621 1 80.38 ? C3' APR 338 C 1 HETATM 15 O O3' APR . . . M 3 49.689 -9.395 38.257 1 80.43 ? O3' APR 338 C 1 HETATM 16 O O4' APR . . . M 3 52.497 -9.371 36.309 1 80.1 ? O4' APR 338 C 1 HETATM 17 C C4' APR . . . M 3 51.083 -9.055 36.248 1 82.56 ? C4' APR 338 C 1 HETATM 18 C C5' APR . . . M 3 50.862 -8.095 35.099 1 87.45 ? C5' APR 338 C 1 HETATM 19 O O5' APR . . . M 3 49.699 -8.53 34.345 1 94.73 ? O5' APR 338 C 1 HETATM 20 P PA APR . . . M 3 48.446 -7.521 34.078 1 98.57 ? PA APR 338 C 1 HETATM 21 O O1A APR . . . M 3 48.893 -6.098 34.21 1 98.62 ? O1A APR 338 C 1 HETATM 22 O O2A APR . . . M 3 47.336 -7.787 35.04 1 97.85 ? O2A APR 338 C 1 HETATM 23 O O3A APR . . . M 3 48.05 -7.912 32.604 1 100.98 ? O3A APR 338 C 1 HETATM 24 P PB APR . . . M 3 48.546 -9.129 31.563 1 103.32 ? PB APR 338 C 1 HETATM 25 O O1B APR . . . M 3 49.872 -8.806 30.962 1 103.24 ? O1B APR 338 C 1 HETATM 26 O O2B APR . . . M 3 48.604 -10.427 32.283 1 103.32 ? O2B APR 338 C 1 HETATM 27 O O5D APR . . . M 3 47.396 -9.095 30.507 1 103.32 ? O5D APR 338 C 1 HETATM 28 C C5D APR . . . M 3 47.256 -7.912 29.751 1 103.32 ? C5D APR 338 C 1 HETATM 29 O O4D APR . . . M 3 44.903 -8.288 29.573 1 103.32 ? O4D APR 338 C 1 HETATM 30 O O1D APR . . . M 3 43.195 -6.941 30.453 1 103.32 ? O1D APR 338 C 1 HETATM 31 C C1D APR . . . M 3 43.959 -7.311 29.256 1 103.32 ? C1D APR 338 C 1 HETATM 32 O O2D APR . . . M 3 44.05 -5.25 27.928 1 103.32 ? O2D APR 338 C 1 HETATM 33 C C2D APR . . . M 3 44.787 -6.168 28.742 1 103.32 ? C2D APR 338 C 1 HETATM 34 O O3D APR . . . M 3 45.557 -7.106 26.559 1 103.05 ? O3D APR 338 C 1 HETATM 35 C C3D APR . . . M 3 45.907 -6.852 27.947 1 103.32 ? C3D APR 338 C 1 HETATM 36 C C4D APR . . . M 3 46.122 -8.066 28.804 1 103.32 ? C4D APR 338 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #