data_1IID
#
_model_server_result.job_id            0qEykcdkMVvsJTLS1GBc4g 
_model_server_result.datetime_utc      '2024-12-02 08:25:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1iid 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    1IID 
#
_exptl.entry_id    1IID 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1IID 
_cell.length_a            75.129 
_cell.length_b            97.06 
_cell.length_c            141.809 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IID 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NI NI . A NI 1 1_555 A O ALA 1 A ALA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc2 C NI NI . A NI 1 1_555 A OD2 ASP 4 A ASP 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc3 C NI NI . A NI 1 1_555 A OD1 ASP 4 A ASP 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc4 C NI NI . A NI 1 1_555 A NE2 HIS 5 A HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc5 D NI NI . A NI 2 1_555 A ND1 HIS 263 A HIS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc6 D NI NI . A NI 2 1_555 F O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc7 D NI NI . A NI 2 1_555 F O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1IID 
_atom_sites.fract_transf_matrix[1][1]    0.01331 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010303 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NI A 1 1 1 NI NI . 
D 3 NI A 1 2 2 NI NI . 
E 4 NHM A 1 500 500 NHM NHM . 
F 5 HOH A 1 501 1 HOH TIP . 
F 5 HOH A 2 502 2 HOH TIP . 
F 5 HOH A 3 503 3 HOH TIP . 
F 5 HOH A 4 504 4 HOH TIP . 
F 5 HOH A 5 505 5 HOH TIP . 
F 5 HOH A 6 506 6 HOH TIP . 
F 5 HOH A 7 507 7 HOH TIP . 
F 5 HOH A 8 508 8 HOH TIP . 
F 5 HOH A 9 509 9 HOH TIP . 
F 5 HOH A 10 510 10 HOH TIP . 
F 5 HOH A 11 511 11 HOH TIP . 
F 5 HOH A 12 512 12 HOH TIP . 
F 5 HOH A 13 513 13 HOH TIP . 
F 5 HOH A 14 514 14 HOH TIP . 
F 5 HOH A 15 515 15 HOH TIP . 
F 5 HOH A 16 516 16 HOH TIP . 
F 5 HOH A 17 517 17 HOH TIP . 
F 5 HOH A 18 518 18 HOH TIP . 
F 5 HOH A 19 519 19 HOH TIP . 
F 5 HOH A 20 520 20 HOH TIP . 
F 5 HOH A 21 521 21 HOH TIP . 
F 5 HOH A 22 522 22 HOH TIP . 
F 5 HOH A 23 523 23 HOH TIP . 
F 5 HOH A 24 524 24 HOH TIP . 
F 5 HOH A 25 525 25 HOH TIP . 
F 5 HOH A 26 526 26 HOH TIP . 
F 5 HOH A 27 527 27 HOH TIP . 
F 5 HOH A 28 528 28 HOH TIP . 
F 5 HOH A 29 529 29 HOH TIP . 
F 5 HOH A 30 530 30 HOH TIP . 
F 5 HOH A 31 531 31 HOH TIP . 
F 5 HOH A 32 532 32 HOH TIP . 
F 5 HOH A 33 533 33 HOH TIP . 
F 5 HOH A 34 534 34 HOH TIP . 
F 5 HOH A 35 535 35 HOH TIP . 
F 5 HOH A 36 536 36 HOH TIP . 
F 5 HOH A 37 537 37 HOH TIP . 
F 5 HOH A 38 538 38 HOH TIP . 
F 5 HOH A 39 539 39 HOH TIP . 
F 5 HOH A 40 540 40 HOH TIP . 
F 5 HOH A 41 541 41 HOH TIP . 
F 5 HOH A 42 542 42 HOH TIP . 
F 5 HOH A 43 543 43 HOH TIP . 
F 5 HOH A 44 544 44 HOH TIP . 
F 5 HOH A 45 545 45 HOH TIP . 
F 5 HOH A 46 546 46 HOH TIP . 
F 5 HOH A 47 547 47 HOH TIP . 
F 5 HOH A 48 548 48 HOH TIP . 
F 5 HOH A 49 549 49 HOH TIP . 
F 5 HOH A 50 550 50 HOH TIP . 
F 5 HOH A 51 551 51 HOH TIP . 
F 5 HOH A 52 552 52 HOH TIP . 
F 5 HOH A 53 553 53 HOH TIP . 
F 5 HOH A 54 554 54 HOH TIP . 
F 5 HOH A 55 555 55 HOH TIP . 
F 5 HOH A 56 556 56 HOH TIP . 
F 5 HOH A 57 557 57 HOH TIP . 
F 5 HOH A 58 558 58 HOH TIP . 
F 5 HOH A 59 559 59 HOH TIP . 
F 5 HOH A 60 560 60 HOH TIP . 
F 5 HOH A 61 561 61 HOH TIP . 
F 5 HOH A 62 562 62 HOH TIP . 
F 5 HOH A 63 563 63 HOH TIP . 
F 5 HOH A 64 564 64 HOH TIP . 
F 5 HOH A 65 565 65 HOH TIP . 
F 5 HOH A 66 566 66 HOH TIP . 
F 5 HOH A 67 567 67 HOH TIP . 
F 5 HOH A 68 568 68 HOH TIP . 
F 5 HOH A 69 569 69 HOH TIP . 
F 5 HOH A 70 570 70 HOH TIP . 
F 5 HOH A 71 571 71 HOH TIP . 
F 5 HOH A 72 572 72 HOH TIP . 
F 5 HOH A 73 573 73 HOH TIP . 
F 5 HOH A 74 574 74 HOH TIP . 
F 5 HOH A 75 575 75 HOH TIP . 
F 5 HOH A 76 576 76 HOH TIP . 
F 5 HOH A 77 577 78 HOH TIP . 
F 5 HOH A 78 578 79 HOH TIP . 
F 5 HOH A 79 579 80 HOH TIP . 
F 5 HOH A 80 580 82 HOH TIP . 
F 5 HOH A 81 581 83 HOH TIP . 
F 5 HOH A 82 582 84 HOH TIP . 
F 5 HOH A 83 583 85 HOH TIP . 
F 5 HOH A 84 584 86 HOH TIP . 
F 5 HOH A 85 585 87 HOH TIP . 
F 5 HOH A 86 586 88 HOH TIP . 
F 5 HOH A 87 587 89 HOH TIP . 
F 5 HOH A 88 588 90 HOH TIP . 
F 5 HOH A 89 589 91 HOH TIP . 
F 5 HOH A 90 590 92 HOH TIP . 
F 5 HOH A 91 591 93 HOH TIP . 
F 5 HOH A 92 592 94 HOH TIP . 
F 5 HOH A 93 593 95 HOH TIP . 
F 5 HOH A 94 594 96 HOH TIP . 
F 5 HOH A 95 595 97 HOH TIP . 
F 5 HOH A 96 596 98 HOH TIP . 
F 5 HOH A 97 597 99 HOH TIP . 
F 5 HOH A 98 598 102 HOH TIP . 
F 5 HOH A 99 599 103 HOH TIP . 
F 5 HOH A 100 600 105 HOH TIP . 
F 5 HOH A 101 601 106 HOH TIP . 
F 5 HOH A 102 602 109 HOH TIP . 
F 5 HOH A 103 603 110 HOH TIP . 
F 5 HOH A 104 604 111 HOH TIP . 
F 5 HOH A 105 605 112 HOH TIP . 
F 5 HOH A 106 606 113 HOH TIP . 
F 5 HOH A 107 607 114 HOH TIP . 
F 5 HOH A 108 608 115 HOH TIP . 
F 5 HOH A 109 609 116 HOH TIP . 
F 5 HOH A 110 610 117 HOH TIP . 
F 5 HOH A 111 611 118 HOH TIP . 
F 5 HOH A 112 612 120 HOH TIP . 
F 5 HOH A 113 613 121 HOH TIP . 
F 5 HOH A 114 614 124 HOH TIP . 
F 5 HOH A 115 615 125 HOH TIP . 
F 5 HOH A 116 616 127 HOH TIP . 
F 5 HOH A 117 617 128 HOH TIP . 
F 5 HOH A 118 618 130 HOH TIP . 
F 5 HOH A 119 619 131 HOH TIP . 
F 5 HOH A 120 620 132 HOH TIP . 
F 5 HOH A 121 621 133 HOH TIP . 
F 5 HOH A 122 622 134 HOH TIP . 
F 5 HOH A 123 623 135 HOH TIP . 
G 5 HOH O 1 136 136 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               15.817 
_atom_site.Cartn_y               39.11 
_atom_site.Cartn_z               4.321 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        62.36 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           2 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#