data_1IIU # _model_server_result.job_id NJ5LHh3NYuhZ3z2j0ygsAQ _model_server_result.datetime_utc '2024-11-04 22:45:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":176}' # _entry.id 1IIU # _exptl.entry_id 1IIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IIU _cell.length_a 46.064 _cell.length_b 53.56 _cell.length_c 73.414 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 4 1_555 A SG CYS 159 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 69 A CYS 70 1_555 A SG CYS 173 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 119 A CYS 120 1_555 A SG CYS 128 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE1 GLU 32 A GLU 33 1_555 B CD CD . A CD 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc2 A OE2 GLU 32 A GLU 33 1_555 B CD CD . A CD 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc3 A OD1 ASP 139 A ASP 140 3_544 B CD CD . A CD 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc4 A OD2 ASP 139 A ASP 140 3_544 B CD CD . A CD 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc5 A NZ LYS 141 A LYS 142 3_544 B CD CD . A CD 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc6 B CD CD . A CD 177 1_555 D O HOH . A HOH 260 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1IIU _atom_sites.fract_transf_matrix[1][1] 0.021709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 177 177 CD CD . C 3 RTL A 1 176 176 RTL RTL . D 4 HOH A 1 178 178 HOH HOH . D 4 HOH A 2 179 179 HOH HOH . D 4 HOH A 3 180 180 HOH HOH . D 4 HOH A 4 181 181 HOH HOH . D 4 HOH A 5 182 182 HOH HOH . D 4 HOH A 6 183 183 HOH HOH . D 4 HOH A 7 184 184 HOH HOH . D 4 HOH A 8 185 185 HOH HOH . D 4 HOH A 9 186 186 HOH HOH . D 4 HOH A 10 187 187 HOH HOH . D 4 HOH A 11 188 188 HOH HOH . D 4 HOH A 12 189 189 HOH HOH . D 4 HOH A 13 190 190 HOH HOH . D 4 HOH A 14 191 191 HOH HOH . D 4 HOH A 15 192 192 HOH HOH . D 4 HOH A 16 193 193 HOH HOH . D 4 HOH A 17 194 194 HOH HOH . D 4 HOH A 18 195 195 HOH HOH . D 4 HOH A 19 196 196 HOH HOH . D 4 HOH A 20 197 197 HOH HOH . D 4 HOH A 21 198 198 HOH HOH . D 4 HOH A 22 199 199 HOH HOH . D 4 HOH A 23 200 200 HOH HOH . D 4 HOH A 24 201 201 HOH HOH . D 4 HOH A 25 202 202 HOH HOH . D 4 HOH A 26 203 203 HOH HOH . D 4 HOH A 27 204 204 HOH HOH . D 4 HOH A 28 205 205 HOH HOH . D 4 HOH A 29 206 206 HOH HOH . D 4 HOH A 30 207 207 HOH HOH . D 4 HOH A 31 208 208 HOH HOH . D 4 HOH A 32 209 209 HOH HOH . D 4 HOH A 33 210 210 HOH HOH . D 4 HOH A 34 211 211 HOH HOH . D 4 HOH A 35 212 212 HOH HOH . D 4 HOH A 36 213 213 HOH HOH . D 4 HOH A 37 214 214 HOH HOH . D 4 HOH A 38 215 215 HOH HOH . D 4 HOH A 39 216 216 HOH HOH . D 4 HOH A 40 217 217 HOH HOH . D 4 HOH A 41 218 218 HOH HOH . D 4 HOH A 42 219 219 HOH HOH . D 4 HOH A 43 220 220 HOH HOH . D 4 HOH A 44 221 221 HOH HOH . D 4 HOH A 45 222 222 HOH HOH . D 4 HOH A 46 223 223 HOH HOH . D 4 HOH A 47 224 224 HOH HOH . D 4 HOH A 48 225 225 HOH HOH . D 4 HOH A 49 226 226 HOH HOH . D 4 HOH A 50 227 227 HOH HOH . D 4 HOH A 51 228 228 HOH HOH . D 4 HOH A 52 229 229 HOH HOH . D 4 HOH A 53 230 230 HOH HOH . D 4 HOH A 54 231 231 HOH HOH . D 4 HOH A 55 232 232 HOH HOH . D 4 HOH A 56 233 233 HOH HOH . D 4 HOH A 57 234 234 HOH HOH . D 4 HOH A 58 235 235 HOH HOH . D 4 HOH A 59 236 236 HOH HOH . D 4 HOH A 60 237 237 HOH HOH . D 4 HOH A 61 238 238 HOH HOH . D 4 HOH A 62 239 239 HOH HOH . D 4 HOH A 63 240 240 HOH HOH . D 4 HOH A 64 241 241 HOH HOH . D 4 HOH A 65 242 242 HOH HOH . D 4 HOH A 66 243 243 HOH HOH . D 4 HOH A 67 244 244 HOH HOH . D 4 HOH A 68 245 245 HOH HOH . D 4 HOH A 69 246 246 HOH HOH . D 4 HOH A 70 247 247 HOH HOH . D 4 HOH A 71 248 248 HOH HOH . D 4 HOH A 72 249 249 HOH HOH . D 4 HOH A 73 250 250 HOH HOH . D 4 HOH A 74 251 251 HOH HOH . D 4 HOH A 75 252 252 HOH HOH . D 4 HOH A 76 253 253 HOH HOH . D 4 HOH A 77 254 254 HOH HOH . D 4 HOH A 78 255 255 HOH HOH . D 4 HOH A 79 256 256 HOH HOH . D 4 HOH A 80 257 257 HOH HOH . D 4 HOH A 81 258 258 HOH HOH . D 4 HOH A 82 259 259 HOH HOH . D 4 HOH A 83 260 260 HOH HOH . D 4 HOH A 84 261 261 HOH HOH . D 4 HOH A 85 262 262 HOH HOH . D 4 HOH A 86 263 263 HOH HOH . D 4 HOH A 87 264 264 HOH HOH . D 4 HOH A 88 265 265 HOH HOH . D 4 HOH A 89 266 266 HOH HOH . D 4 HOH A 90 267 267 HOH HOH . D 4 HOH A 91 268 268 HOH HOH . D 4 HOH A 92 269 269 HOH HOH . D 4 HOH A 93 270 270 HOH HOH . D 4 HOH A 94 271 271 HOH HOH . D 4 HOH A 95 272 272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . C 3 0.633 4.862 -7.803 1 22.59 ? C1 RTL 176 A 1 HETATM 2 C C2 RTL . . . C 3 0.828 6.32 -8.284 1 19.84 ? C2 RTL 176 A 1 HETATM 3 C C3 RTL . . . C 3 0.07 7.46 -7.6 1 20.87 ? C3 RTL 176 A 1 HETATM 4 C C4 RTL . . . C 3 -0.868 7.145 -6.411 1 23.64 ? C4 RTL 176 A 1 HETATM 5 C C5 RTL . . . C 3 -1.056 5.697 -5.875 1 22.82 ? C5 RTL 176 A 1 HETATM 6 C C6 RTL . . . C 3 -0.276 4.61 -6.576 1 22.86 ? C6 RTL 176 A 1 HETATM 7 C C7 RTL . . . C 3 -0.393 3.154 -6.15 1 20.57 ? C7 RTL 176 A 1 HETATM 8 C C8 RTL . . . C 3 -1.441 2.428 -5.637 1 19.01 ? C8 RTL 176 A 1 HETATM 9 C C9 RTL . . . C 3 -1.373 1.056 -5.362 1 17.21 ? C9 RTL 176 A 1 HETATM 10 C C10 RTL . . . C 3 -2.677 0.643 -4.872 1 16.65 ? C10 RTL 176 A 1 HETATM 11 C C11 RTL . . . C 3 -3.048 -0.604 -4.526 1 15.72 ? C11 RTL 176 A 1 HETATM 12 C C12 RTL . . . C 3 -4.32 -0.855 -4.103 1 16.51 ? C12 RTL 176 A 1 HETATM 13 C C13 RTL . . . C 3 -4.793 -2.154 -3.664 1 17.3 ? C13 RTL 176 A 1 HETATM 14 C C14 RTL . . . C 3 -5.965 -2.198 -2.815 1 19.4 ? C14 RTL 176 A 1 HETATM 15 C C15 RTL . . . C 3 -6.592 -3.491 -2.31 1 20.11 ? C15 RTL 176 A 1 HETATM 16 O O1 RTL . . . C 3 -7.73 -3.366 -1.486 1 20.78 ? O1 RTL 176 A 1 HETATM 17 C C16 RTL . . . C 3 2.05 4.171 -7.687 1 21.9 ? C16 RTL 176 A 1 HETATM 18 C C17 RTL . . . C 3 -0.017 4.209 -9.05 1 20.47 ? C17 RTL 176 A 1 HETATM 19 C C18 RTL . . . C 3 -0.736 5.882 -4.378 1 22.67 ? C18 RTL 176 A 1 HETATM 20 C C19 RTL . . . C 3 -0.12 0.528 -4.578 1 17 ? C19 RTL 176 A 1 HETATM 21 C C20 RTL . . . C 3 -4.077 -3.484 -4.071 1 16.83 ? C20 RTL 176 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #