data_1IJ2 # _model_server_result.job_id cA96LAXde91oaAXw5cpKWg _model_server_result.datetime_utc '2024-11-17 02:37:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ij2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 1IJ2 # _exptl.entry_id 1IJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IJ2 _cell.length_a 35.763 _cell.length_b 46.332 _cell.length_c 51.359 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ARG 2 A ARG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 B C ACE 1 B ACE 0 1_555 B N ARG 2 B ARG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 C C ACE 1 C ACE 0 1_555 C N ARG 2 C ARG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OE1 GLU 11 A GLU 10 4_556 F CD CD . C CD 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.484 ? metalc ? metalc2 A OE1 GLU 11 A GLU 10 4_556 F CD CD . C CD 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.809 ? metalc ? metalc3 A OE2 GLU 11 A GLU 10 4_556 F CD CD . C CD 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A ND1 HIS 19 A HIS 18 1_555 D CD CD . A CD 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 A ND1 HIS 19 A HIS 18 1_555 D CD CD . A CD 202 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.749 ? metalc ? metalc6 D CD CD . A CD 202 1_555 G O HOH . A HOH 236 3_545 ? B ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc7 D CD CD . A CD 202 1_555 G O HOH . A HOH 237 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc8 D CD CD . A CD 202 1_555 C OE1 GLU 11 C GLU 10 4_456 ? A ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc9 D CD CD . A CD 202 1_555 C OE1 GLU 11 C GLU 10 4_456 ? B ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc10 D CD CD . A CD 202 1_555 C OE2 GLU 11 C GLU 10 4_456 ? A ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc11 D CD CD . A CD 202 1_555 I O HOH . C HOH 218 4_456 ? B ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc12 B OD2 ASP 8 B ASP 7 3_645 E CD CD . B CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc13 B OD1 ASP 8 B ASP 7 3_645 E CD CD . B CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc14 B NE2 HIS 19 B HIS 18 1_555 E CD CD . B CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc15 B OE2 GLU 23 B GLU 22 1_555 E CD CD . B CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc16 E CD CD . B CD 201 1_555 H O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc17 E CD CD . B CD 201 1_555 H O HOH . B HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc18 E CD CD . B CD 201 1_555 H O HOH . B HOH 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc19 H O HOH . B HOH 216 2_555 F CD CD . C CD 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.114 ? metalc ? metalc20 C ND1 HIS 19 C HIS 18 1_555 F CD CD . C CD 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.796 ? metalc ? metalc21 C ND1 HIS 19 C HIS 18 1_555 F CD CD . C CD 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.367 ? metalc ? metalc22 F CD CD . C CD 203 1_555 I O HOH . C HOH 220 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc23 F CD CD . C CD 203 1_555 I O HOH . C HOH 237 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.614 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1IJ2 _atom_sites.fract_transf_matrix[1][1] 0.027962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CD A 1 202 2 CD CD . E 2 CD B 1 201 1 CD CD . F 2 CD C 1 203 3 CD CD . G 3 HOH A 1 203 6 HOH TIP . G 3 HOH A 2 204 10 HOH TIP . G 3 HOH A 3 205 11 HOH TIP . G 3 HOH A 4 206 12 HOH TIP . G 3 HOH A 5 207 14 HOH TIP . G 3 HOH A 6 208 21 HOH TIP . G 3 HOH A 7 209 23 HOH TIP . G 3 HOH A 8 210 24 HOH TIP . G 3 HOH A 9 211 46 HOH TIP . G 3 HOH A 10 212 55 HOH TIP . G 3 HOH A 11 213 56 HOH TIP . G 3 HOH A 12 214 62 HOH TIP . G 3 HOH A 13 215 63 HOH TIP . G 3 HOH A 14 216 64 HOH TIP . G 3 HOH A 15 217 65 HOH TIP . G 3 HOH A 16 218 66 HOH TIP . G 3 HOH A 17 219 67 HOH TIP . G 3 HOH A 18 220 68 HOH TIP . G 3 HOH A 19 221 69 HOH TIP . G 3 HOH A 20 222 71 HOH TIP . G 3 HOH A 21 223 76 HOH TIP . G 3 HOH A 22 224 77 HOH TIP . G 3 HOH A 23 225 78 HOH TIP . G 3 HOH A 24 226 79 HOH TIP . G 3 HOH A 25 227 80 HOH TIP . G 3 HOH A 26 228 81 HOH TIP . G 3 HOH A 27 229 82 HOH TIP . G 3 HOH A 28 230 83 HOH TIP . G 3 HOH A 29 231 84 HOH TIP . G 3 HOH A 30 232 85 HOH TIP . G 3 HOH A 31 233 86 HOH TIP . G 3 HOH A 32 234 88 HOH TIP . G 3 HOH A 33 235 89 HOH TIP . G 3 HOH A 34 236 94 HOH TIP . G 3 HOH A 35 237 116 HOH TIP . H 3 HOH B 1 202 1 HOH TIP . H 3 HOH B 2 203 113 HOH TIP . H 3 HOH B 3 204 4 HOH TIP . H 3 HOH B 4 205 13 HOH TIP . H 3 HOH B 5 206 15 HOH TIP . H 3 HOH B 6 207 16 HOH TIP . H 3 HOH B 7 208 18 HOH TIP . H 3 HOH B 8 209 19 HOH TIP . H 3 HOH B 9 210 22 HOH TIP . H 3 HOH B 10 211 26 HOH TIP . H 3 HOH B 11 212 28 HOH TIP . H 3 HOH B 12 213 29 HOH TIP . H 3 HOH B 13 214 30 HOH TIP . H 3 HOH B 14 215 33 HOH TIP . H 3 HOH B 15 216 37 HOH TIP . H 3 HOH B 16 217 38 HOH TIP . H 3 HOH B 17 218 43 HOH TIP . H 3 HOH B 18 219 44 HOH TIP . H 3 HOH B 19 220 45 HOH TIP . H 3 HOH B 20 221 47 HOH TIP . H 3 HOH B 21 222 48 HOH TIP . H 3 HOH B 22 223 49 HOH TIP . H 3 HOH B 23 224 50 HOH TIP . H 3 HOH B 24 225 52 HOH TIP . H 3 HOH B 25 226 54 HOH TIP . H 3 HOH B 26 227 57 HOH TIP . H 3 HOH B 27 228 59 HOH TIP . H 3 HOH B 28 229 70 HOH TIP . H 3 HOH B 29 230 72 HOH TIP . H 3 HOH B 30 231 74 HOH TIP . H 3 HOH B 31 232 87 HOH TIP . H 3 HOH B 32 233 90 HOH TIP . H 3 HOH B 33 234 91 HOH TIP . H 3 HOH B 34 235 92 HOH TIP . H 3 HOH B 35 236 93 HOH TIP . H 3 HOH B 36 237 98 HOH TIP . H 3 HOH B 37 238 101 HOH TIP . H 3 HOH B 38 239 105 HOH TIP . H 3 HOH B 39 240 106 HOH TIP . H 3 HOH B 40 241 110 HOH TIP . H 3 HOH B 41 242 114 HOH TIP . H 3 HOH B 42 243 118 HOH TIP . I 3 HOH C 1 204 2 HOH TIP . I 3 HOH C 2 205 100 HOH TIP . I 3 HOH C 3 206 3 HOH TIP . I 3 HOH C 4 207 5 HOH TIP . I 3 HOH C 5 208 7 HOH TIP . I 3 HOH C 6 209 8 HOH TIP . I 3 HOH C 7 210 9 HOH TIP . I 3 HOH C 8 211 17 HOH TIP . I 3 HOH C 9 212 20 HOH TIP . I 3 HOH C 10 213 25 HOH TIP . I 3 HOH C 11 214 27 HOH TIP . I 3 HOH C 12 215 31 HOH TIP . I 3 HOH C 13 216 34 HOH TIP . I 3 HOH C 14 217 35 HOH TIP . I 3 HOH C 15 218 36 HOH TIP . I 3 HOH C 16 219 39 HOH TIP . I 3 HOH C 17 220 40 HOH TIP . I 3 HOH C 18 221 41 HOH TIP . I 3 HOH C 19 222 42 HOH TIP . I 3 HOH C 20 223 51 HOH TIP . I 3 HOH C 21 224 53 HOH TIP . I 3 HOH C 22 225 58 HOH TIP . I 3 HOH C 23 226 60 HOH TIP . I 3 HOH C 24 227 61 HOH TIP . I 3 HOH C 25 228 73 HOH TIP . I 3 HOH C 26 229 75 HOH TIP . I 3 HOH C 27 230 95 HOH TIP . I 3 HOH C 28 231 96 HOH TIP . I 3 HOH C 29 232 97 HOH TIP . I 3 HOH C 30 233 99 HOH TIP . I 3 HOH C 31 234 102 HOH TIP . I 3 HOH C 32 235 103 HOH TIP . I 3 HOH C 33 236 104 HOH TIP . I 3 HOH C 34 237 111 HOH TIP . I 3 HOH C 35 238 112 HOH TIP . I 3 HOH C 36 239 115 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.062 _atom_site.Cartn_y -0.333 _atom_site.Cartn_z 13.756 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #