data_1IJ6 # _model_server_result.job_id '_RIJJblxXUsdsPIyI6yk8A' _model_server_result.datetime_utc '2025-03-06 09:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ij6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":357}' # _entry.id 1IJ6 # _exptl.entry_id 1IJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IJ6 _cell.length_a 64.4 _cell.length_b 64.4 _cell.length_c 209.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 198 A ASP 230 1_555 B CA CA . A CA 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A ND2 ASN 200 A ASN 232 1_555 B CA CA . A CA 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc3 A OD1 ASN 202 A ASN 234 1_555 B CA CA . A CA 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc4 A O THR 204 A THR 236 1_555 B CA CA . A CA 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc5 A OE2 GLU 209 A GLU 241 1_555 B CA CA . A CA 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc6 A OE1 GLU 209 A GLU 241 1_555 B CA CA . A CA 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc7 A OD1 ASP 233 A ASP 265 1_555 C CA CA . A CA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc8 A OD1 ASP 235 A ASP 267 1_555 C CA CA . A CA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc9 A OG SER 237 A SER 269 1_555 C CA CA . A CA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc10 A O ASP 239 A ASP 271 1_555 C CA CA . A CA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc11 A OD1 ASP 239 A ASP 271 1_555 C CA CA . A CA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.275 ? metalc ? metalc12 A OE1 GLU 244 A GLU 276 1_555 C CA CA . A CA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc13 A OE2 GLU 244 A GLU 276 1_555 C CA CA . A CA 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc14 A OD1 ASP 263 A ASP 295 1_555 D CA CA . A CA 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc15 A OD1 ASP 265 A ASP 297 1_555 D CA CA . A CA 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc16 A OD2 ASP 265 A ASP 297 1_555 D CA CA . A CA 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc17 A OG SER 267 A SER 299 1_555 D CA CA . A CA 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc18 A O GLN 269 A GLN 301 1_555 D CA CA . A CA 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc19 A OE1 GLU 274 A GLU 306 1_555 D CA CA . A CA 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc20 A OE2 GLU 274 A GLU 306 1_555 D CA CA . A CA 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc21 A OD1 ASP 300 A ASP 332 1_555 E CA CA . A CA 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc22 A OD1 ASP 302 A ASP 334 1_555 E CA CA . A CA 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc23 A OD2 ASP 302 A ASP 334 1_555 E CA CA . A CA 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc24 A OG SER 304 A SER 336 1_555 E CA CA . A CA 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc25 A O SER 306 A SER 338 1_555 E CA CA . A CA 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc26 A OE1 GLU 311 A GLU 343 1_555 E CA CA . A CA 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.284 ? metalc ? metalc27 A OE2 GLU 311 A GLU 343 1_555 E CA CA . A CA 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1IJ6 _atom_sites.fract_transf_matrix[1][1] 0.015528 _atom_sites.fract_transf_matrix[1][2] 0.008965 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 356 356 CA CA . C 2 CA A 1 357 357 CA CA . D 2 CA A 1 358 358 CA CA . E 2 CA A 1 359 359 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 49.939 _atom_site.Cartn_y 3.515 _atom_site.Cartn_z 71.184 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 357 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #