data_1IJ8
#
_model_server_result.job_id            72Bs8YJ1TnEwfZmrysXk9A 
_model_server_result.datetime_utc      '2024-11-29 14:08:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ij8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    1IJ8 
#
_exptl.entry_id    1IJ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1IJ8 
_cell.length_a            72.269 
_cell.length_b            80.362 
_cell.length_c            43.402 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IJ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 80.362 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 B SG CYS 4 B CYS 204 1_555 B SG CYS 83 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 B ND2 ASN 17 B ASN 217 1_555 E C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 284 n n 
C1 O1 NAG sing 285 n n 
C1 O5 NAG sing 286 n n 
C1 H1 NAG sing 287 n n 
C2 C3 NAG sing 288 n n 
C2 N2 NAG sing 289 n n 
C2 H2 NAG sing 290 n n 
C3 C4 NAG sing 291 n n 
C3 O3 NAG sing 292 n n 
C3 H3 NAG sing 293 n n 
C4 C5 NAG sing 294 n n 
C4 O4 NAG sing 295 n n 
C4 H4 NAG sing 296 n n 
C5 C6 NAG sing 297 n n 
C5 O5 NAG sing 298 n n 
C5 H5 NAG sing 299 n n 
C6 O6 NAG sing 300 n n 
C6 H61 NAG sing 301 n n 
C6 H62 NAG sing 302 n n 
C7 C8 NAG sing 303 n n 
C7 N2 NAG sing 304 n n 
C7 O7 NAG doub 305 n n 
C8 H81 NAG sing 306 n n 
C8 H82 NAG sing 307 n n 
C8 H83 NAG sing 308 n n 
N2 HN2 NAG sing 309 n n 
O1 HO1 NAG sing 310 n n 
O3 HO3 NAG sing 311 n n 
O4 HO4 NAG sing 312 n n 
O6 HO6 NAG sing 313 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1IJ8 
_atom_sites.fract_transf_matrix[1][1]    0.013837 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02304 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 401 401 NAG NAG . 
D 3 BNI A 1 501 501 BNI BNI . 
E 2 NAG B 1 402 402 NAG NAG . 
F 3 BNI B 1 502 502 BNI BNI . 
G 4 HOH A 1 601 601 HOH HOH . 
G 4 HOH A 2 602 602 HOH HOH . 
G 4 HOH A 3 604 604 HOH HOH . 
G 4 HOH A 4 606 606 HOH HOH . 
G 4 HOH A 5 613 613 HOH HOH . 
G 4 HOH A 6 614 614 HOH HOH . 
G 4 HOH A 7 615 615 HOH HOH . 
G 4 HOH A 8 622 622 HOH HOH . 
G 4 HOH A 9 623 623 HOH HOH . 
G 4 HOH A 10 625 625 HOH HOH . 
G 4 HOH A 11 627 627 HOH HOH . 
G 4 HOH A 12 628 628 HOH HOH . 
G 4 HOH A 13 630 630 HOH HOH . 
G 4 HOH A 14 631 631 HOH HOH . 
G 4 HOH A 15 632 632 HOH HOH . 
G 4 HOH A 16 635 635 HOH HOH . 
G 4 HOH A 17 636 636 HOH HOH . 
G 4 HOH A 18 638 638 HOH HOH . 
G 4 HOH A 19 639 639 HOH HOH . 
G 4 HOH A 20 641 641 HOH HOH . 
G 4 HOH A 21 644 644 HOH HOH . 
G 4 HOH A 22 645 645 HOH HOH . 
G 4 HOH A 23 646 646 HOH HOH . 
G 4 HOH A 24 648 648 HOH HOH . 
G 4 HOH A 25 654 654 HOH HOH . 
G 4 HOH A 26 655 655 HOH HOH . 
G 4 HOH A 27 656 656 HOH HOH . 
G 4 HOH A 28 659 659 HOH HOH . 
G 4 HOH A 29 661 661 HOH HOH . 
G 4 HOH A 30 662 662 HOH HOH . 
G 4 HOH A 31 665 665 HOH HOH . 
G 4 HOH A 32 668 668 HOH HOH . 
G 4 HOH A 33 670 670 HOH HOH . 
G 4 HOH A 34 673 673 HOH HOH . 
G 4 HOH A 35 675 675 HOH HOH . 
G 4 HOH A 36 676 676 HOH HOH . 
G 4 HOH A 37 677 677 HOH HOH . 
G 4 HOH A 38 680 680 HOH HOH . 
G 4 HOH A 39 682 682 HOH HOH . 
H 4 HOH B 1 603 603 HOH HOH . 
H 4 HOH B 2 605 605 HOH HOH . 
H 4 HOH B 3 607 607 HOH HOH . 
H 4 HOH B 4 608 608 HOH HOH . 
H 4 HOH B 5 609 609 HOH HOH . 
H 4 HOH B 6 610 610 HOH HOH . 
H 4 HOH B 7 611 611 HOH HOH . 
H 4 HOH B 8 612 612 HOH HOH . 
H 4 HOH B 9 616 616 HOH HOH . 
H 4 HOH B 10 617 617 HOH HOH . 
H 4 HOH B 11 618 618 HOH HOH . 
H 4 HOH B 12 619 619 HOH HOH . 
H 4 HOH B 13 620 620 HOH HOH . 
H 4 HOH B 14 621 621 HOH HOH . 
H 4 HOH B 15 624 624 HOH HOH . 
H 4 HOH B 16 626 626 HOH HOH . 
H 4 HOH B 17 629 629 HOH HOH . 
H 4 HOH B 18 633 633 HOH HOH . 
H 4 HOH B 19 634 634 HOH HOH . 
H 4 HOH B 20 637 637 HOH HOH . 
H 4 HOH B 21 640 640 HOH HOH . 
H 4 HOH B 22 642 642 HOH HOH . 
H 4 HOH B 23 643 643 HOH HOH . 
H 4 HOH B 24 647 647 HOH HOH . 
H 4 HOH B 25 649 649 HOH HOH . 
H 4 HOH B 26 650 650 HOH HOH . 
H 4 HOH B 27 651 651 HOH HOH . 
H 4 HOH B 28 652 652 HOH HOH . 
H 4 HOH B 29 653 653 HOH HOH . 
H 4 HOH B 30 657 657 HOH HOH . 
H 4 HOH B 31 658 658 HOH HOH . 
H 4 HOH B 32 660 660 HOH HOH . 
H 4 HOH B 33 663 663 HOH HOH . 
H 4 HOH B 34 664 664 HOH HOH . 
H 4 HOH B 35 666 666 HOH HOH . 
H 4 HOH B 36 667 667 HOH HOH . 
H 4 HOH B 37 669 669 HOH HOH . 
H 4 HOH B 38 671 671 HOH HOH . 
H 4 HOH B 39 672 672 HOH HOH . 
H 4 HOH B 40 674 674 HOH HOH . 
H 4 HOH B 41 678 678 HOH HOH . 
H 4 HOH B 42 679 679 HOH HOH . 
H 4 HOH B 43 681 681 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 1.117 14.687 24.426 1 44.48 ? C1 NAG 401 A 1 
HETATM 2 C C2 NAG . . . C 2 1.563 14.867 25.885 1 45.11 ? C2 NAG 401 A 1 
HETATM 3 C C3 NAG . . . C 2 2.883 14.154 26.174 1 45.93 ? C3 NAG 401 A 1 
HETATM 4 C C4 NAG . . . C 2 2.941 12.838 25.406 1 46.71 ? C4 NAG 401 A 1 
HETATM 5 C C5 NAG . . . C 2 2.844 13.082 23.891 1 46.73 ? C5 NAG 401 A 1 
HETATM 6 C C6 NAG . . . C 2 2.019 12.025 23.185 1 48.09 ? C6 NAG 401 A 1 
HETATM 7 C C7 NAG . . . C 2 0.64 16.934 26.666 1 44.91 ? C7 NAG 401 A 1 
HETATM 8 C C8 NAG . . . C 2 0.818 18.411 26.978 1 45.57 ? C8 NAG 401 A 1 
HETATM 9 N N2 NAG . . . C 2 1.692 16.277 26.193 1 45 ? N2 NAG 401 A 1 
HETATM 10 O O3 NAG . . . C 2 2.983 13.897 27.568 1 45.63 ? O3 NAG 401 A 1 
HETATM 11 O O4 NAG . . . C 2 4.154 12.162 25.704 1 47.61 ? O4 NAG 401 A 1 
HETATM 12 O O5 NAG . . . C 2 2.243 14.376 23.593 1 46.08 ? O5 NAG 401 A 1 
HETATM 13 O O6 NAG . . . C 2 2.1 10.777 23.859 1 48.74 ? O6 NAG 401 A 1 
HETATM 14 O O7 NAG . . . C 2 -0.451 16.393 26.846 1 45.38 ? O7 NAG 401 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           44 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#