data_1IJ8
#
_model_server_result.job_id            WVU7k7Zo4VBoyF6Lyjrecg 
_model_server_result.datetime_utc      '2024-11-05 05:00:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ij8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    1IJ8 
#
_exptl.entry_id    1IJ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              364.419 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1IJ8 
_cell.length_a            72.269 
_cell.length_b            80.362 
_cell.length_c            43.402 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IJ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 80.362 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 B SG CYS 4 B CYS 204 1_555 B SG CYS 83 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 B ND2 ASN 17 B ASN 217 1_555 E C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C16 H20 N4 O4 S' 
_chem_comp.formula_weight    364.419 
_chem_comp.id                BNI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'BIOTINYL P-NITROANILINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C10 BNI sing 70 n n 
C1 O2 BNI doub 71 n n 
C1 N17 BNI sing 72 n n 
C10 C9 BNI sing 73 n n 
C10 H101 BNI sing 74 n n 
C10 H102 BNI sing 75 n n 
C9 C8 BNI sing 76 n n 
C9 H91 BNI sing 77 n n 
C9 H92 BNI sing 78 n n 
C8 C7 BNI sing 79 n n 
C8 H81 BNI sing 80 n n 
C8 H82 BNI sing 81 n n 
C7 C2 BNI sing 82 n n 
C7 H71 BNI sing 83 n n 
C7 H72 BNI sing 84 n n 
C2 C4 BNI sing 85 n n 
C2 S1 BNI sing 86 n n 
C2 H21A BNI sing 87 n n 
C6 C5 BNI sing 88 n n 
C6 S1 BNI sing 89 n n 
C6 H61 BNI sing 90 n n 
C6 H62 BNI sing 91 n n 
C4 C5 BNI sing 92 n n 
C4 N2 BNI sing 93 n n 
C4 HC4 BNI sing 94 n n 
C5 N1 BNI sing 95 n n 
C5 HC5 BNI sing 96 n n 
C3 O3 BNI doub 97 n n 
C3 N1 BNI sing 98 n n 
C3 N2 BNI sing 99 n n 
N1 HN11 BNI sing 100 n n 
N2 HN21 BNI sing 101 n n 
N17 C18 BNI sing 102 n n 
N17 H171 BNI sing 103 n n 
C18 C20 BNI doub 104 n y 
C18 C24 BNI sing 105 n y 
C20 C21 BNI sing 106 n y 
C20 H20 BNI sing 107 n n 
C21 C22 BNI doub 108 n y 
C21 H21 BNI sing 109 n n 
C22 C23 BNI sing 110 n y 
C22 N25 BNI sing 111 n n 
C23 C24 BNI doub 112 n y 
C23 H23 BNI sing 113 n n 
C24 H24 BNI sing 114 n n 
N25 O26 BNI doub 115 n n 
N25 O27 BNI sing 116 n n 
#
_atom_sites.entry_id                     1IJ8 
_atom_sites.fract_transf_matrix[1][1]    0.013837 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02304 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 401 401 NAG NAG . 
D 3 BNI A 1 501 501 BNI BNI . 
E 2 NAG B 1 402 402 NAG NAG . 
F 3 BNI B 1 502 502 BNI BNI . 
G 4 HOH A 1 601 601 HOH HOH . 
G 4 HOH A 2 602 602 HOH HOH . 
G 4 HOH A 3 604 604 HOH HOH . 
G 4 HOH A 4 606 606 HOH HOH . 
G 4 HOH A 5 613 613 HOH HOH . 
G 4 HOH A 6 614 614 HOH HOH . 
G 4 HOH A 7 615 615 HOH HOH . 
G 4 HOH A 8 622 622 HOH HOH . 
G 4 HOH A 9 623 623 HOH HOH . 
G 4 HOH A 10 625 625 HOH HOH . 
G 4 HOH A 11 627 627 HOH HOH . 
G 4 HOH A 12 628 628 HOH HOH . 
G 4 HOH A 13 630 630 HOH HOH . 
G 4 HOH A 14 631 631 HOH HOH . 
G 4 HOH A 15 632 632 HOH HOH . 
G 4 HOH A 16 635 635 HOH HOH . 
G 4 HOH A 17 636 636 HOH HOH . 
G 4 HOH A 18 638 638 HOH HOH . 
G 4 HOH A 19 639 639 HOH HOH . 
G 4 HOH A 20 641 641 HOH HOH . 
G 4 HOH A 21 644 644 HOH HOH . 
G 4 HOH A 22 645 645 HOH HOH . 
G 4 HOH A 23 646 646 HOH HOH . 
G 4 HOH A 24 648 648 HOH HOH . 
G 4 HOH A 25 654 654 HOH HOH . 
G 4 HOH A 26 655 655 HOH HOH . 
G 4 HOH A 27 656 656 HOH HOH . 
G 4 HOH A 28 659 659 HOH HOH . 
G 4 HOH A 29 661 661 HOH HOH . 
G 4 HOH A 30 662 662 HOH HOH . 
G 4 HOH A 31 665 665 HOH HOH . 
G 4 HOH A 32 668 668 HOH HOH . 
G 4 HOH A 33 670 670 HOH HOH . 
G 4 HOH A 34 673 673 HOH HOH . 
G 4 HOH A 35 675 675 HOH HOH . 
G 4 HOH A 36 676 676 HOH HOH . 
G 4 HOH A 37 677 677 HOH HOH . 
G 4 HOH A 38 680 680 HOH HOH . 
G 4 HOH A 39 682 682 HOH HOH . 
H 4 HOH B 1 603 603 HOH HOH . 
H 4 HOH B 2 605 605 HOH HOH . 
H 4 HOH B 3 607 607 HOH HOH . 
H 4 HOH B 4 608 608 HOH HOH . 
H 4 HOH B 5 609 609 HOH HOH . 
H 4 HOH B 6 610 610 HOH HOH . 
H 4 HOH B 7 611 611 HOH HOH . 
H 4 HOH B 8 612 612 HOH HOH . 
H 4 HOH B 9 616 616 HOH HOH . 
H 4 HOH B 10 617 617 HOH HOH . 
H 4 HOH B 11 618 618 HOH HOH . 
H 4 HOH B 12 619 619 HOH HOH . 
H 4 HOH B 13 620 620 HOH HOH . 
H 4 HOH B 14 621 621 HOH HOH . 
H 4 HOH B 15 624 624 HOH HOH . 
H 4 HOH B 16 626 626 HOH HOH . 
H 4 HOH B 17 629 629 HOH HOH . 
H 4 HOH B 18 633 633 HOH HOH . 
H 4 HOH B 19 634 634 HOH HOH . 
H 4 HOH B 20 637 637 HOH HOH . 
H 4 HOH B 21 640 640 HOH HOH . 
H 4 HOH B 22 642 642 HOH HOH . 
H 4 HOH B 23 643 643 HOH HOH . 
H 4 HOH B 24 647 647 HOH HOH . 
H 4 HOH B 25 649 649 HOH HOH . 
H 4 HOH B 26 650 650 HOH HOH . 
H 4 HOH B 27 651 651 HOH HOH . 
H 4 HOH B 28 652 652 HOH HOH . 
H 4 HOH B 29 653 653 HOH HOH . 
H 4 HOH B 30 657 657 HOH HOH . 
H 4 HOH B 31 658 658 HOH HOH . 
H 4 HOH B 32 660 660 HOH HOH . 
H 4 HOH B 33 663 663 HOH HOH . 
H 4 HOH B 34 664 664 HOH HOH . 
H 4 HOH B 35 666 666 HOH HOH . 
H 4 HOH B 36 667 667 HOH HOH . 
H 4 HOH B 37 669 669 HOH HOH . 
H 4 HOH B 38 671 671 HOH HOH . 
H 4 HOH B 39 672 672 HOH HOH . 
H 4 HOH B 40 674 674 HOH HOH . 
H 4 HOH B 41 678 678 HOH HOH . 
H 4 HOH B 42 679 679 HOH HOH . 
H 4 HOH B 43 681 681 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNI . . . F 3 -9.441 37.189 0.356 0.85 51.17 ? C1 BNI 502 B 1 
HETATM 2 C C10 BNI . . . F 3 -10.905 36.926 0.899 0.85 50.95 ? C10 BNI 502 B 1 
HETATM 3 C C9 BNI . . . F 3 -11.357 38.371 1.184 0.85 50.37 ? C9 BNI 502 B 1 
HETATM 4 C C8 BNI . . . F 3 -12.024 38.847 2.439 0.85 50.19 ? C8 BNI 502 B 1 
HETATM 5 C C7 BNI . . . F 3 -10.76 39.39 3.103 0.85 50.04 ? C7 BNI 502 B 1 
HETATM 6 C C2 BNI . . . F 3 -10.582 40.073 4.482 0.85 50.2 ? C2 BNI 502 B 1 
HETATM 7 C C6 BNI . . . F 3 -10.435 40.616 7.04 0.85 49.85 ? C6 BNI 502 B 1 
HETATM 8 C C4 BNI . . . F 3 -11.436 41.373 4.832 0.85 50.12 ? C4 BNI 502 B 1 
HETATM 9 C C5 BNI . . . F 3 -11.102 41.814 6.251 0.85 50.06 ? C5 BNI 502 B 1 
HETATM 10 C C3 BNI . . . F 3 -13.371 41.954 5.943 0.85 49.86 ? C3 BNI 502 B 1 
HETATM 11 O O2 BNI . . . F 3 -8.785 36.226 0.028 0.85 51.07 ? O2 BNI 502 B 1 
HETATM 12 O O3 BNI . . . F 3 -14.543 42.171 6.203 0.85 49.43 ? O3 BNI 502 B 1 
HETATM 13 N N1 BNI . . . F 3 -12.382 42.154 6.837 0.85 50 ? N1 BNI 502 B 1 
HETATM 14 N N2 BNI . . . F 3 -12.894 41.492 4.74 0.85 50.17 ? N2 BNI 502 B 1 
HETATM 15 S S1 BNI . . . F 3 -10.86 39.114 5.963 0.85 49.83 ? S1 BNI 502 B 1 
HETATM 16 N N17 BNI . . . F 3 -9.016 38.488 0.299 0.85 51.68 ? N17 BNI 502 B 1 
HETATM 17 C C18 BNI . . . F 3 -8.117 39.145 -0.537 0.85 52.45 ? C18 BNI 502 B 1 
HETATM 18 C C20 BNI . . . F 3 -6.764 38.717 -0.787 0.85 52.65 ? C20 BNI 502 B 1 
HETATM 19 C C21 BNI . . . F 3 -5.92 39.498 -1.684 0.85 53.2 ? C21 BNI 502 B 1 
HETATM 20 C C22 BNI . . . F 3 -6.442 40.712 -2.328 0.85 53.66 ? C22 BNI 502 B 1 
HETATM 21 C C23 BNI . . . F 3 -7.792 41.121 -2.064 0.85 53.22 ? C23 BNI 502 B 1 
HETATM 22 C C24 BNI . . . F 3 -8.61 40.349 -1.185 0.85 52.68 ? C24 BNI 502 B 1 
HETATM 23 N N25 BNI . . . F 3 -5.581 41.557 -3.278 0.85 54.36 ? N25 BNI 502 B 1 
HETATM 24 O O26 BNI . . . F 3 -4.438 41.261 -3.538 0.85 54.77 ? O26 BNI 502 B 1 
HETATM 25 O O27 BNI . . . F 3 -6.023 42.55 -3.797 0.85 54.61 ? O27 BNI 502 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#