data_1IJD
#
_model_server_result.job_id            5FVroPTCvFxFVq7yb8UuMA 
_model_server_result.datetime_utc      '2024-10-19 12:22:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ijd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":44}' 
#
_entry.id    1IJD 
#
_exptl.entry_id    1IJD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1IJD 
_cell.length_a            117.26 
_cell.length_b            117.26 
_cell.length_c            295.92 
_cell.Z_PDB               54 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IJD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
PISA,PQS octadecameric 18 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 O N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C FME 1 A FME 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 C C FME 1 C FME 1 1_555 C N ASN 2 C ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 E C FME 1 E FME 1 1_555 E N ASN 2 E ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A O1 FME 1 A FME 1 1_555 H MG BCL . A BCL 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc2 A NE2 HIS 31 A HIS 31 1_555 G MG BCL . A BCL 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc3 B NE2 HIS 31 B HIS 31 1_555 K MG BCL . B BCL 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc4 C O1 FME 1 C FME 1 1_555 M MG BCL . C BCL 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc5 C NE2 HIS 31 C HIS 31 1_555 L MG BCL . C BCL 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc6 D NE2 HIS 31 D HIS 31 1_555 P MG BCL . D BCL 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc7 E O1 FME 1 E FME 1 1_555 R MG BCL . E BCL 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc8 E NE2 HIS 31 E HIS 31 1_555 Q MG BCL . E BCL 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc9 F NE2 HIS 31 F HIS 31 1_555 U MG BCL . F BCL 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 218 n n 
C1 C2 BOG sing 219 n n 
C1 O5 BOG sing 220 n n 
C1 H1 BOG sing 221 n n 
O1 C1' BOG sing 222 n n 
C2 O2 BOG sing 223 n n 
C2 C3 BOG sing 224 n n 
C2 H2 BOG sing 225 n n 
O2 HO2 BOG sing 226 n n 
C3 O3 BOG sing 227 n n 
C3 C4 BOG sing 228 n n 
C3 H3 BOG sing 229 n n 
O3 HO3 BOG sing 230 n n 
C4 O4 BOG sing 231 n n 
C4 C5 BOG sing 232 n n 
C4 H4 BOG sing 233 n n 
O4 HO4 BOG sing 234 n n 
C5 O5 BOG sing 235 n n 
C5 C6 BOG sing 236 n n 
C5 H5 BOG sing 237 n n 
C6 O6 BOG sing 238 n n 
C6 H61 BOG sing 239 n n 
C6 H62 BOG sing 240 n n 
O6 HO6 BOG sing 241 n n 
C1' C2' BOG sing 242 n n 
C1' "H1'1" BOG sing 243 n n 
C1' "H1'2" BOG sing 244 n n 
C2' C3' BOG sing 245 n n 
C2' "H2'1" BOG sing 246 n n 
C2' "H2'2" BOG sing 247 n n 
C3' C4' BOG sing 248 n n 
C3' "H3'1" BOG sing 249 n n 
C3' "H3'2" BOG sing 250 n n 
C4' C5' BOG sing 251 n n 
C4' "H4'1" BOG sing 252 n n 
C4' "H4'2" BOG sing 253 n n 
C5' C6' BOG sing 254 n n 
C5' "H5'1" BOG sing 255 n n 
C5' "H5'2" BOG sing 256 n n 
C6' C7' BOG sing 257 n n 
C6' "H6'1" BOG sing 258 n n 
C6' "H6'2" BOG sing 259 n n 
C7' C8' BOG sing 260 n n 
C7' "H7'1" BOG sing 261 n n 
C7' "H7'2" BOG sing 262 n n 
C8' "H8'1" BOG sing 263 n n 
C8' "H8'2" BOG sing 264 n n 
C8' "H8'3" BOG sing 265 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1IJD 
_atom_sites.fract_transf_matrix[1][1]    0.008528 
_atom_sites.fract_transf_matrix[1][2]    0.004923 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 BCL A 1 54 1 BCL BCL . 
H 3 BCL A 1 55 7 BCL BCL . 
I 4 RPA B 1 43 10 RPA RPA . 
J 5 BOG B 1 44 13 BOG BOG . 
K 3 BCL B 1 45 2 BCL BCL . 
L 3 BCL C 1 54 3 BCL BCL . 
M 3 BCL C 1 55 8 BCL BCL . 
N 4 RPA D 1 43 11 RPA RPA . 
O 5 BOG D 1 44 14 BOG BOG . 
P 3 BCL D 1 45 4 BCL BCL . 
Q 3 BCL E 1 54 5 BCL BCL . 
R 3 BCL E 1 55 9 BCL BCL . 
S 4 RPA F 1 43 12 RPA RPA . 
T 5 BOG F 1 44 15 BOG BOG . 
U 3 BCL F 1 45 6 BCL BCL . 
V 6 HOH A 1 102 102 HOH HOH . 
V 6 HOH A 2 105 105 HOH HOH . 
V 6 HOH A 3 108 108 HOH HOH . 
V 6 HOH A 4 109 109 HOH HOH . 
V 6 HOH A 5 110 100 HOH HOH . 
V 6 HOH A 6 111 111 HOH HOH . 
V 6 HOH A 7 112 112 HOH HOH . 
V 6 HOH A 8 113 113 HOH HOH . 
V 6 HOH A 9 123 123 HOH HOH . 
W 6 HOH B 1 100 100 HOH HOH . 
W 6 HOH B 2 101 101 HOH HOH . 
W 6 HOH B 3 104 104 HOH HOH . 
W 6 HOH B 4 106 106 HOH HOH . 
W 6 HOH B 5 107 107 HOH HOH . 
W 6 HOH B 6 121 121 HOH HOH . 
W 6 HOH B 7 137 137 HOH HOH . 
X 6 HOH C 1 103 103 HOH HOH . 
X 6 HOH C 2 114 114 HOH HOH . 
X 6 HOH C 3 116 116 HOH HOH . 
X 6 HOH C 4 119 119 HOH HOH . 
X 6 HOH C 5 122 122 HOH HOH . 
X 6 HOH C 6 124 124 HOH HOH . 
X 6 HOH C 7 125 125 HOH HOH . 
X 6 HOH C 8 126 126 HOH HOH . 
X 6 HOH C 9 127 127 HOH HOH . 
Y 6 HOH D 1 115 115 HOH HOH . 
Y 6 HOH D 2 118 118 HOH HOH . 
Y 6 HOH D 3 120 120 HOH HOH . 
Y 6 HOH D 4 135 135 HOH HOH . 
Z 6 HOH E 1 117 117 HOH HOH . 
Z 6 HOH E 2 128 128 HOH HOH . 
Z 6 HOH E 3 130 130 HOH HOH . 
Z 6 HOH E 4 131 131 HOH HOH . 
Z 6 HOH E 5 133 133 HOH HOH . 
Z 6 HOH E 6 136 136 HOH HOH . 
Z 6 HOH E 7 138 138 HOH HOH . 
Z 6 HOH E 8 139 139 HOH HOH . 
Z 6 HOH E 9 140 140 HOH HOH . 
Z 6 HOH E 10 141 141 HOH HOH . 
AA 6 HOH F 1 129 129 HOH HOH . 
AA 6 HOH F 2 132 132 HOH HOH . 
AA 6 HOH F 3 134 134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 BOG . . . T 5 11.286 27.892 11.203 1 65.13 ? O1 BOG 44 F 1 
HETATM 2 C C1' BOG . . . T 5 11.538 27.91 12.615 1 87.43 ? C1' BOG 44 F 1 
HETATM 3 C C2' BOG . . . T 5 11.028 29.006 13.539 1 105.84 ? C2' BOG 44 F 1 
HETATM 4 C C3' BOG . . . T 5 10.239 28.637 14.785 1 60.42 ? C3' BOG 44 F 1 
HETATM 5 C C4' BOG . . . T 5 10.943 27.862 15.885 1 51.34 ? C4' BOG 44 F 1 
HETATM 6 C C5' BOG . . . T 5 10.588 28.04 17.351 1 73.97 ? C5' BOG 44 F 1 
HETATM 7 C C6' BOG . . . T 5 11.565 27.51 18.395 1 42.6 ? C6' BOG 44 F 1 
HETATM 8 C C7' BOG . . . T 5 11.163 27.526 19.861 1 93.01 ? C7' BOG 44 F 1 
HETATM 9 C C8' BOG . . . T 5 11.697 28.652 20.738 1 30.84 ? C8' BOG 44 F 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#