data_1IJI # _model_server_result.job_id zhHnY6tXu2iZl_pyouTbLw _model_server_result.datetime_utc '2024-10-11 16:25:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1IJI # _exptl.entry_id 1IJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.18 _cell.angle_gamma 90 _cell.entry_id 1IJI _cell.length_a 132.857 _cell.length_b 62.602 _cell.length_c 45.273 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 132.857 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 214 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 214 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.312 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 1IJI _atom_sites.fract_transf_matrix[1][1] 0.007527 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001902 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 500 214 PLP LLP . C 3 HOH A 1 357 357 HOH WAT . C 3 HOH A 2 358 358 HOH WAT . C 3 HOH A 3 359 359 HOH WAT . C 3 HOH A 4 360 360 HOH WAT . C 3 HOH A 5 361 361 HOH WAT . C 3 HOH A 6 362 362 HOH WAT . C 3 HOH A 7 363 363 HOH WAT . C 3 HOH A 8 364 364 HOH WAT . C 3 HOH A 9 365 365 HOH WAT . C 3 HOH A 10 366 366 HOH WAT . C 3 HOH A 11 367 367 HOH WAT . C 3 HOH A 12 368 368 HOH WAT . C 3 HOH A 13 369 369 HOH WAT . C 3 HOH A 14 370 370 HOH WAT . C 3 HOH A 15 371 371 HOH WAT . C 3 HOH A 16 372 372 HOH WAT . C 3 HOH A 17 373 373 HOH WAT . C 3 HOH A 18 374 374 HOH WAT . C 3 HOH A 19 375 375 HOH WAT . C 3 HOH A 20 376 376 HOH WAT . C 3 HOH A 21 377 377 HOH WAT . C 3 HOH A 22 378 378 HOH WAT . C 3 HOH A 23 379 379 HOH WAT . C 3 HOH A 24 380 380 HOH WAT . C 3 HOH A 25 381 381 HOH WAT . C 3 HOH A 26 382 382 HOH WAT . C 3 HOH A 27 383 383 HOH WAT . C 3 HOH A 28 384 384 HOH WAT . C 3 HOH A 29 385 385 HOH WAT . C 3 HOH A 30 386 386 HOH WAT . C 3 HOH A 31 387 387 HOH WAT . C 3 HOH A 32 388 388 HOH WAT . C 3 HOH A 33 389 389 HOH WAT . C 3 HOH A 34 390 390 HOH WAT . C 3 HOH A 35 391 391 HOH WAT . C 3 HOH A 36 392 392 HOH WAT . C 3 HOH A 37 393 393 HOH WAT . C 3 HOH A 38 394 394 HOH WAT . C 3 HOH A 39 395 395 HOH WAT . C 3 HOH A 40 396 396 HOH WAT . C 3 HOH A 41 397 397 HOH WAT . C 3 HOH A 42 398 398 HOH WAT . C 3 HOH A 43 399 399 HOH WAT . C 3 HOH A 44 400 400 HOH WAT . C 3 HOH A 45 401 401 HOH WAT . C 3 HOH A 46 402 402 HOH WAT . C 3 HOH A 47 403 403 HOH WAT . C 3 HOH A 48 404 404 HOH WAT . C 3 HOH A 49 405 405 HOH WAT . C 3 HOH A 50 406 406 HOH WAT . C 3 HOH A 51 407 407 HOH WAT . C 3 HOH A 52 408 408 HOH WAT . C 3 HOH A 53 409 409 HOH WAT . C 3 HOH A 54 410 410 HOH WAT . C 3 HOH A 55 411 411 HOH WAT . C 3 HOH A 56 412 412 HOH WAT . C 3 HOH A 57 413 413 HOH WAT . C 3 HOH A 58 414 414 HOH WAT . C 3 HOH A 59 415 415 HOH WAT . C 3 HOH A 60 416 416 HOH WAT . C 3 HOH A 61 417 417 HOH WAT . C 3 HOH A 62 418 418 HOH WAT . C 3 HOH A 63 419 419 HOH WAT . C 3 HOH A 64 420 420 HOH WAT . C 3 HOH A 65 421 421 HOH WAT . C 3 HOH A 66 422 422 HOH WAT . C 3 HOH A 67 423 423 HOH WAT . C 3 HOH A 68 424 424 HOH WAT . C 3 HOH A 69 425 425 HOH WAT . C 3 HOH A 70 426 426 HOH WAT . C 3 HOH A 71 427 427 HOH WAT . C 3 HOH A 72 428 428 HOH WAT . C 3 HOH A 73 429 429 HOH WAT . C 3 HOH A 74 430 430 HOH WAT . C 3 HOH A 75 431 431 HOH WAT . C 3 HOH A 76 432 432 HOH WAT . C 3 HOH A 77 433 433 HOH WAT . C 3 HOH A 78 434 434 HOH WAT . C 3 HOH A 79 435 435 HOH WAT . C 3 HOH A 80 436 436 HOH WAT . C 3 HOH A 81 437 437 HOH WAT . C 3 HOH A 82 438 438 HOH WAT . C 3 HOH A 83 439 439 HOH WAT . C 3 HOH A 84 440 440 HOH WAT . C 3 HOH A 85 441 441 HOH WAT . C 3 HOH A 86 442 442 HOH WAT . C 3 HOH A 87 443 443 HOH WAT . C 3 HOH A 88 444 444 HOH WAT . C 3 HOH A 89 445 445 HOH WAT . C 3 HOH A 90 446 446 HOH WAT . C 3 HOH A 91 447 447 HOH WAT . C 3 HOH A 92 448 448 HOH WAT . C 3 HOH A 93 449 449 HOH WAT . C 3 HOH A 94 450 450 HOH WAT . C 3 HOH A 95 451 451 HOH WAT . C 3 HOH A 96 452 452 HOH WAT . C 3 HOH A 97 453 453 HOH WAT . C 3 HOH A 98 454 454 HOH WAT . C 3 HOH A 99 455 455 HOH WAT . C 3 HOH A 100 456 456 HOH WAT . C 3 HOH A 101 457 457 HOH WAT . C 3 HOH A 102 458 458 HOH WAT . C 3 HOH A 103 459 459 HOH WAT . C 3 HOH A 104 460 460 HOH WAT . C 3 HOH A 105 461 461 HOH WAT . C 3 HOH A 106 462 462 HOH WAT . C 3 HOH A 107 463 463 HOH WAT . C 3 HOH A 108 464 464 HOH WAT . C 3 HOH A 109 465 465 HOH WAT . C 3 HOH A 110 466 466 HOH WAT . C 3 HOH A 111 467 467 HOH WAT . C 3 HOH A 112 468 468 HOH WAT . C 3 HOH A 113 469 469 HOH WAT . C 3 HOH A 114 470 470 HOH WAT . C 3 HOH A 115 471 471 HOH WAT . C 3 HOH A 116 472 472 HOH WAT . C 3 HOH A 117 473 473 HOH WAT . C 3 HOH A 118 474 474 HOH WAT . C 3 HOH A 119 475 475 HOH WAT . C 3 HOH A 120 476 476 HOH WAT . C 3 HOH A 121 477 477 HOH WAT . C 3 HOH A 122 478 478 HOH WAT . C 3 HOH A 123 479 479 HOH WAT . C 3 HOH A 124 480 480 HOH WAT . C 3 HOH A 125 481 481 HOH WAT . C 3 HOH A 126 482 482 HOH WAT . C 3 HOH A 127 483 483 HOH WAT . C 3 HOH A 128 484 484 HOH WAT . C 3 HOH A 129 485 485 HOH WAT . C 3 HOH A 130 486 486 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 50.578 49.21 -2.256 1 17.78 ? N1 PLP 500 A 1 HETATM 2 C C2 PLP . . . B 2 49.733 49.331 -3.28 1 18.44 ? C2 PLP 500 A 1 HETATM 3 C C2A PLP . . . B 2 48.707 48.285 -3.396 1 18.61 ? C2A PLP 500 A 1 HETATM 4 C C3 PLP . . . B 2 49.914 50.484 -4.127 1 18.23 ? C3 PLP 500 A 1 HETATM 5 O O3 PLP . . . B 2 49.107 50.642 -5.143 1 19.18 ? O3 PLP 500 A 1 HETATM 6 C C4 PLP . . . B 2 50.973 51.412 -3.841 1 17.83 ? C4 PLP 500 A 1 HETATM 7 C C4A PLP . . . B 2 51.127 52.539 -4.7 1 19.82 ? C4A PLP 500 A 1 HETATM 8 C C5 PLP . . . B 2 51.782 51.169 -2.743 1 17.64 ? C5 PLP 500 A 1 HETATM 9 C C6 PLP . . . B 2 51.582 50.057 -1.949 1 18.32 ? C6 PLP 500 A 1 HETATM 10 C C5A PLP . . . B 2 52.917 52.063 -2.296 1 17.17 ? C5A PLP 500 A 1 HETATM 11 O O4P PLP . . . B 2 54.264 51.721 -2.333 1 14.71 ? O4P PLP 500 A 1 HETATM 12 P P PLP . . . B 2 55.432 52.655 -1.908 1 16.06 ? P PLP 500 A 1 HETATM 13 O O1P PLP . . . B 2 56.678 51.814 -1.976 1 17.19 ? O1P PLP 500 A 1 HETATM 14 O O2P PLP . . . B 2 55.576 53.805 -2.946 1 13.81 ? O2P PLP 500 A 1 HETATM 15 O O3P PLP . . . B 2 55.255 53.109 -0.414 1 14.22 ? O3P PLP 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #