data_1IJJ # _model_server_result.job_id 9LjhaE2z22GztyK-WqVfag _model_server_result.datetime_utc '2024-11-15 08:27:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ijj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":380}' # _entry.id 1IJJ # _exptl.entry_id 1IJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IJJ _cell.length_a 100.304 _cell.length_b 102.183 _cell.length_c 124.218 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IJJ _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 139 A GLN 137 1_555 C MG MG . A MG 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc2 D O3G ATP . A ATP 380 1_555 C MG MG . A MG 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc3 D O2B ATP . A ATP 380 1_555 C MG MG . A MG 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc4 F MG MG . B MG 785 1_555 G O2B ATP . B ATP 880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc5 F MG MG . B MG 785 1_555 G O1G ATP . B ATP 880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1IJJ _atom_sites.fract_transf_matrix[1][1] 0.00997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 385 385 MG MG . D 3 ATP A 1 380 380 ATP ATP . E 4 LAR A 1 901 901 LAR LAR . F 2 MG B 1 785 785 MG MG . G 3 ATP B 1 880 880 ATP ATP . H 4 LAR B 1 921 921 LAR LAR . I 5 HOH A 1 1000 1000 HOH HOH . I 5 HOH A 2 1004 1004 HOH HOH . I 5 HOH A 3 1006 1006 HOH HOH . I 5 HOH A 4 1007 1007 HOH HOH . I 5 HOH A 5 1008 1008 HOH HOH . I 5 HOH A 6 1009 1009 HOH HOH . I 5 HOH A 7 1010 1010 HOH HOH . I 5 HOH A 8 1011 1011 HOH HOH . I 5 HOH A 9 1012 1012 HOH HOH . I 5 HOH A 10 1013 1013 HOH HOH . I 5 HOH A 11 1015 1015 HOH HOH . I 5 HOH A 12 1017 1017 HOH HOH . I 5 HOH A 13 1018 1018 HOH HOH . I 5 HOH A 14 1019 1019 HOH HOH . I 5 HOH A 15 1022 1022 HOH HOH . I 5 HOH A 16 1023 1023 HOH HOH . I 5 HOH A 17 1024 1024 HOH HOH . I 5 HOH A 18 1027 1027 HOH HOH . I 5 HOH A 19 1028 1028 HOH HOH . I 5 HOH A 20 1030 1030 HOH HOH . I 5 HOH A 21 1031 1031 HOH HOH . I 5 HOH A 22 1032 1032 HOH HOH . I 5 HOH A 23 1033 1033 HOH HOH . I 5 HOH A 24 1034 1034 HOH HOH . I 5 HOH A 25 1035 1035 HOH HOH . I 5 HOH A 26 1036 1036 HOH HOH . I 5 HOH A 27 1037 1037 HOH HOH . I 5 HOH A 28 1038 1038 HOH HOH . I 5 HOH A 29 1039 1039 HOH HOH . I 5 HOH A 30 1042 1042 HOH HOH . I 5 HOH A 31 1043 1043 HOH HOH . I 5 HOH A 32 1044 1044 HOH HOH . I 5 HOH A 33 1045 1045 HOH HOH . I 5 HOH A 34 1046 1046 HOH HOH . I 5 HOH A 35 1047 1047 HOH HOH . I 5 HOH A 36 1048 1048 HOH HOH . I 5 HOH A 37 1049 1049 HOH HOH . I 5 HOH A 38 1050 1050 HOH HOH . I 5 HOH A 39 1051 1051 HOH HOH . I 5 HOH A 40 1052 1052 HOH HOH . I 5 HOH A 41 1054 1054 HOH HOH . J 5 HOH B 1 1001 1001 HOH HOH . J 5 HOH B 2 1002 1002 HOH HOH . J 5 HOH B 3 1003 1003 HOH HOH . J 5 HOH B 4 1005 1005 HOH HOH . J 5 HOH B 5 1014 1014 HOH HOH . J 5 HOH B 6 1016 1016 HOH HOH . J 5 HOH B 7 1020 1020 HOH HOH . J 5 HOH B 8 1021 1021 HOH HOH . J 5 HOH B 9 1025 1025 HOH HOH . J 5 HOH B 10 1026 1026 HOH HOH . J 5 HOH B 11 1029 1029 HOH HOH . J 5 HOH B 12 1040 1040 HOH HOH . J 5 HOH B 13 1041 1041 HOH HOH . J 5 HOH B 14 1053 1053 HOH HOH . J 5 HOH B 15 1055 1055 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 4.197 32.29 52.561 1 59.84 ? PG ATP 380 A 1 HETATM 2 O O1G ATP . . . D 3 4.754 30.945 52.861 1 34.01 ? O1G ATP 380 A 1 HETATM 3 O O2G ATP . . . D 3 3.233 32.278 51.451 1 29.99 ? O2G ATP 380 A 1 HETATM 4 O O3G ATP . . . D 3 3.535 32.914 53.801 1 67.75 ? O3G ATP 380 A 1 HETATM 5 P PB ATP . . . D 3 5.964 34.589 52.64 1 62.86 ? PB ATP 380 A 1 HETATM 6 O O1B ATP . . . D 3 7.388 34.717 52.294 1 75.75 ? O1B ATP 380 A 1 HETATM 7 O O2B ATP . . . D 3 5.674 34.716 54.106 1 73.97 ? O2B ATP 380 A 1 HETATM 8 O O3B ATP . . . D 3 5.431 33.214 52.09 1 55.46 ? O3B ATP 380 A 1 HETATM 9 P PA ATP . . . D 3 4.863 37.219 52.392 1 52.43 ? PA ATP 380 A 1 HETATM 10 O O1A ATP . . . D 3 3.755 37.279 53.404 1 52.38 ? O1A ATP 380 A 1 HETATM 11 O O2A ATP . . . D 3 6.158 37.754 52.934 1 50.78 ? O2A ATP 380 A 1 HETATM 12 O O3A ATP . . . D 3 5.121 35.719 51.904 1 35.95 ? O3A ATP 380 A 1 HETATM 13 O O5' ATP . . . D 3 4.42 37.983 51.078 1 41.88 ? O5' ATP 380 A 1 HETATM 14 C C5' ATP . . . D 3 5.388 38.282 49.988 1 53.6 ? C5' ATP 380 A 1 HETATM 15 C C4' ATP . . . D 3 4.51 38.248 48.633 1 47.53 ? C4' ATP 380 A 1 HETATM 16 O O4' ATP . . . D 3 3.565 39.389 48.744 1 52.79 ? O4' ATP 380 A 1 HETATM 17 C C3' ATP . . . D 3 5.241 38.482 47.308 1 45.15 ? C3' ATP 380 A 1 HETATM 18 O O3' ATP . . . D 3 4.561 37.589 46.409 1 47.02 ? O3' ATP 380 A 1 HETATM 19 C C2' ATP . . . D 3 5.033 39.904 46.994 1 46.51 ? C2' ATP 380 A 1 HETATM 20 O O2' ATP . . . D 3 5.026 40.237 45.526 1 65.23 ? O2' ATP 380 A 1 HETATM 21 C C1' ATP . . . D 3 3.682 40.197 47.574 1 52.6 ? C1' ATP 380 A 1 HETATM 22 N N9 ATP . . . D 3 3.485 41.627 47.85 1 59.25 ? N9 ATP 380 A 1 HETATM 23 C C8 ATP . . . D 3 4.19 42.526 48.59 1 61.62 ? C8 ATP 380 A 1 HETATM 24 N N7 ATP . . . D 3 3.656 43.74 48.571 1 71.54 ? N7 ATP 380 A 1 HETATM 25 C C5 ATP . . . D 3 2.51 43.649 47.755 1 65.48 ? C5 ATP 380 A 1 HETATM 26 C C6 ATP . . . D 3 1.481 44.574 47.328 1 75.05 ? C6 ATP 380 A 1 HETATM 27 N N6 ATP . . . D 3 1.415 45.856 47.651 1 78.67 ? N6 ATP 380 A 1 HETATM 28 N N1 ATP . . . D 3 0.503 44.1 46.521 1 83.46 ? N1 ATP 380 A 1 HETATM 29 C C2 ATP . . . D 3 0.525 42.769 46.155 1 83.89 ? C2 ATP 380 A 1 HETATM 30 N N3 ATP . . . D 3 1.418 41.812 46.49 1 78.58 ? N3 ATP 380 A 1 HETATM 31 C C4 ATP . . . D 3 2.38 42.338 47.301 1 71.52 ? C4 ATP 380 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #