data_1IJJ # _model_server_result.job_id U3XS4_lQ3BTNwi1KgG90fw _model_server_result.datetime_utc '2024-11-15 08:36:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ijj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":921}' # _entry.id 1IJJ # _exptl.entry_id 1IJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LATRUNCULIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IJJ _cell.length_a 100.304 _cell.length_b 102.183 _cell.length_c 124.218 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IJJ _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 139 A GLN 137 1_555 C MG MG . A MG 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc2 D O3G ATP . A ATP 380 1_555 C MG MG . A MG 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc3 D O2B ATP . A ATP 380 1_555 C MG MG . A MG 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc4 F MG MG . B MG 785 1_555 G O2B ATP . B ATP 880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc5 F MG MG . B MG 785 1_555 G O1G ATP . B ATP 880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? # _chem_comp.formula 'C22 H31 N O5 S' _chem_comp.formula_weight 421.55 _chem_comp.id LAR _chem_comp.mon_nstd_flag . _chem_comp.name 'LATRUNCULIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C19 LAR sing 222 n n S1 C20 LAR sing 223 n n N1 C18 LAR sing 224 n n N1 C20 LAR sing 225 n n N1 HN1 LAR sing 226 n n O1 C1 LAR doub 227 n n O2 C1 LAR sing 228 n n O2 C15 LAR sing 229 n n O3 C13 LAR sing 230 n n O3 C17 LAR sing 231 n n O4 C17 LAR sing 232 n n O4 HO4 LAR sing 233 n n O5 C20 LAR doub 234 n n C1 C2 LAR sing 235 n n C2 C3 LAR doub 236 z n C2 H21 LAR sing 237 n n C3 C4 LAR sing 238 n n C3 C21 LAR sing 239 n n C4 C5 LAR sing 240 n n C4 H41 LAR sing 241 n n C4 H42 LAR sing 242 n n C5 C6 LAR sing 243 n n C5 H51 LAR sing 244 n n C5 H52 LAR sing 245 n n C6 C7 LAR doub 246 e n C6 H61 LAR sing 247 n n C7 C8 LAR sing 248 n n C7 H71 LAR sing 249 n n C8 C9 LAR doub 250 z n C8 H81 LAR sing 251 n n C9 C10 LAR sing 252 n n C9 H91 LAR sing 253 n n C10 C11 LAR sing 254 n n C10 C22 LAR sing 255 n n C10 H101 LAR sing 256 n n C11 C12 LAR sing 257 n n C11 H111 LAR sing 258 n n C11 H112 LAR sing 259 n n C12 C13 LAR sing 260 n n C12 H121 LAR sing 261 n n C12 H122 LAR sing 262 n n C13 C14 LAR sing 263 n n C13 H131 LAR sing 264 n n C14 C15 LAR sing 265 n n C14 H141 LAR sing 266 n n C14 H142 LAR sing 267 n n C15 C16 LAR sing 268 n n C15 H151 LAR sing 269 n n C16 C17 LAR sing 270 n n C16 H161 LAR sing 271 n n C16 H162 LAR sing 272 n n C17 C18 LAR sing 273 n n C18 C19 LAR sing 274 n n C18 H181 LAR sing 275 n n C19 H191 LAR sing 276 n n C19 H192 LAR sing 277 n n C21 H211 LAR sing 278 n n C21 H212 LAR sing 279 n n C21 H213 LAR sing 280 n n C22 H221 LAR sing 281 n n C22 H222 LAR sing 282 n n C22 H223 LAR sing 283 n n # _atom_sites.entry_id 1IJJ _atom_sites.fract_transf_matrix[1][1] 0.00997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 385 385 MG MG . D 3 ATP A 1 380 380 ATP ATP . E 4 LAR A 1 901 901 LAR LAR . F 2 MG B 1 785 785 MG MG . G 3 ATP B 1 880 880 ATP ATP . H 4 LAR B 1 921 921 LAR LAR . I 5 HOH A 1 1000 1000 HOH HOH . I 5 HOH A 2 1004 1004 HOH HOH . I 5 HOH A 3 1006 1006 HOH HOH . I 5 HOH A 4 1007 1007 HOH HOH . I 5 HOH A 5 1008 1008 HOH HOH . I 5 HOH A 6 1009 1009 HOH HOH . I 5 HOH A 7 1010 1010 HOH HOH . I 5 HOH A 8 1011 1011 HOH HOH . I 5 HOH A 9 1012 1012 HOH HOH . I 5 HOH A 10 1013 1013 HOH HOH . I 5 HOH A 11 1015 1015 HOH HOH . I 5 HOH A 12 1017 1017 HOH HOH . I 5 HOH A 13 1018 1018 HOH HOH . I 5 HOH A 14 1019 1019 HOH HOH . I 5 HOH A 15 1022 1022 HOH HOH . I 5 HOH A 16 1023 1023 HOH HOH . I 5 HOH A 17 1024 1024 HOH HOH . I 5 HOH A 18 1027 1027 HOH HOH . I 5 HOH A 19 1028 1028 HOH HOH . I 5 HOH A 20 1030 1030 HOH HOH . I 5 HOH A 21 1031 1031 HOH HOH . I 5 HOH A 22 1032 1032 HOH HOH . I 5 HOH A 23 1033 1033 HOH HOH . I 5 HOH A 24 1034 1034 HOH HOH . I 5 HOH A 25 1035 1035 HOH HOH . I 5 HOH A 26 1036 1036 HOH HOH . I 5 HOH A 27 1037 1037 HOH HOH . I 5 HOH A 28 1038 1038 HOH HOH . I 5 HOH A 29 1039 1039 HOH HOH . I 5 HOH A 30 1042 1042 HOH HOH . I 5 HOH A 31 1043 1043 HOH HOH . I 5 HOH A 32 1044 1044 HOH HOH . I 5 HOH A 33 1045 1045 HOH HOH . I 5 HOH A 34 1046 1046 HOH HOH . I 5 HOH A 35 1047 1047 HOH HOH . I 5 HOH A 36 1048 1048 HOH HOH . I 5 HOH A 37 1049 1049 HOH HOH . I 5 HOH A 38 1050 1050 HOH HOH . I 5 HOH A 39 1051 1051 HOH HOH . I 5 HOH A 40 1052 1052 HOH HOH . I 5 HOH A 41 1054 1054 HOH HOH . J 5 HOH B 1 1001 1001 HOH HOH . J 5 HOH B 2 1002 1002 HOH HOH . J 5 HOH B 3 1003 1003 HOH HOH . J 5 HOH B 4 1005 1005 HOH HOH . J 5 HOH B 5 1014 1014 HOH HOH . J 5 HOH B 6 1016 1016 HOH HOH . J 5 HOH B 7 1020 1020 HOH HOH . J 5 HOH B 8 1021 1021 HOH HOH . J 5 HOH B 9 1025 1025 HOH HOH . J 5 HOH B 10 1026 1026 HOH HOH . J 5 HOH B 11 1029 1029 HOH HOH . J 5 HOH B 12 1040 1040 HOH HOH . J 5 HOH B 13 1041 1041 HOH HOH . J 5 HOH B 14 1053 1053 HOH HOH . J 5 HOH B 15 1055 1055 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 LAR . . . H 4 9.289 63.992 73.646 1 89.37 ? S1 LAR 921 B 1 HETATM 2 N N1 LAR . . . H 4 8.976 64.547 76.035 1 85.26 ? N1 LAR 921 B 1 HETATM 3 O O1 LAR . . . H 4 12.543 64.791 78.96 1 76.33 ? O1 LAR 921 B 1 HETATM 4 O O2 LAR . . . H 4 12.101 62.506 78.941 1 78.68 ? O2 LAR 921 B 1 HETATM 5 O O3 LAR . . . H 4 9.193 61.246 77.274 1 60.21 ? O3 LAR 921 B 1 HETATM 6 O O4 LAR . . . H 4 10.903 62.437 76.218 1 60.82 ? O4 LAR 921 B 1 HETATM 7 O O5 LAR . . . H 4 9.692 66.282 74.848 1 101.77 ? O5 LAR 921 B 1 HETATM 8 C C1 LAR . . . H 4 12.921 63.611 78.803 1 83.17 ? C1 LAR 921 B 1 HETATM 9 C C2 LAR . . . H 4 14.308 63.226 78.457 1 88.97 ? C2 LAR 921 B 1 HETATM 10 C C3 LAR . . . H 4 14.899 62.088 78.012 1 85.05 ? C3 LAR 921 B 1 HETATM 11 C C4 LAR . . . H 4 14.166 60.786 77.728 1 83.85 ? C4 LAR 921 B 1 HETATM 12 C C5 LAR . . . H 4 14.737 59.662 78.573 1 85.28 ? C5 LAR 921 B 1 HETATM 13 C C6 LAR . . . H 4 13.935 58.409 78.548 1 79.62 ? C6 LAR 921 B 1 HETATM 14 C C7 LAR . . . H 4 12.809 58.16 77.904 1 81.86 ? C7 LAR 921 B 1 HETATM 15 C C8 LAR . . . H 4 12.108 56.931 77.944 1 82.28 ? C8 LAR 921 B 1 HETATM 16 C C9 LAR . . . H 4 10.931 56.781 77.263 1 74.08 ? C9 LAR 921 B 1 HETATM 17 C C10 LAR . . . H 4 10.26 57.856 76.425 1 60.91 ? C10 LAR 921 B 1 HETATM 18 C C11 LAR . . . H 4 9.081 58.464 77.136 1 67.12 ? C11 LAR 921 B 1 HETATM 19 C C12 LAR . . . H 4 9.414 59.148 78.436 1 78.33 ? C12 LAR 921 B 1 HETATM 20 C C13 LAR . . . H 4 10.048 60.49 78.234 1 78.34 ? C13 LAR 921 B 1 HETATM 21 C C14 LAR . . . H 4 10.159 61.25 79.553 1 81.97 ? C14 LAR 921 B 1 HETATM 22 C C15 LAR . . . H 4 10.693 62.658 79.292 1 77 ? C15 LAR 921 B 1 HETATM 23 C C16 LAR . . . H 4 9.951 63.385 78.181 1 75.51 ? C16 LAR 921 B 1 HETATM 24 C C17 LAR . . . H 4 9.672 62.526 76.945 1 62.98 ? C17 LAR 921 B 1 HETATM 25 C C18 LAR . . . H 4 8.622 63.108 76.05 1 72.45 ? C18 LAR 921 B 1 HETATM 26 C C19 LAR . . . H 4 8.64 62.627 74.647 1 81.9 ? C19 LAR 921 B 1 HETATM 27 C C20 LAR . . . H 4 9.347 65.151 74.988 1 86.61 ? C20 LAR 921 B 1 HETATM 28 C C21 LAR . . . H 4 16.445 62.148 77.774 1 105.03 ? C21 LAR 921 B 1 HETATM 29 C C22 LAR . . . H 4 9.825 57.202 75.039 1 59.95 ? C22 LAR 921 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #