data_1IK5 # _model_server_result.job_id hRp_lOYsKeMwXcR2EaWwZg _model_server_result.datetime_utc '2025-03-04 15:04:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ik5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":99}' # _entry.id 1IK5 # _exptl.entry_id 1IK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.83 _cell.angle_gamma 90 _cell.entry_id 1IK5 _cell.length_a 60.04 _cell.length_b 29.53 _cell.length_c 52.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' A 12 A A 12 1_555 A P CBR 13 A CBR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale2 A O3' CBR 13 A CBR 13 1_555 A P C 14 A C 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale3 B O3' A 12 B A 26 1_555 B P CBR 13 B CBR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? covale ? covale4 B O3' CBR 13 B CBR 27 1_555 B P C 14 B C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? metalc ? metalc1 E O HOH . A HOH 32 1_555 C MG MG . A MG 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc2 E O HOH . A HOH 40 1_555 C MG MG . A MG 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc3 E O HOH . A HOH 74 1_555 D MG MG . B MG 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 E O HOH . A HOH 77 1_555 D MG MG . B MG 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc5 E O HOH . A HOH 78 1_555 C MG MG . A MG 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc6 F O HOH . B HOH 75 1_555 D MG MG . B MG 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc7 F O HOH . B HOH 76 1_555 D MG MG . B MG 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 F O HOH . B HOH 93 1_555 D MG MG . B MG 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 B N3 C 14 B C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 B O2 C 14 B C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 B N4 C 14 B C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 B N3 CBR 13 B CBR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 B O2 CBR 13 B CBR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 B N4 CBR 13 B CBR 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 U 3 A U 3 1_555 B N1 A 12 B A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 U 3 A U 3 1_555 B N6 A 12 B A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog9 A N6 A 4 A A 4 1_555 B O2 U 6 B U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog10 A N7 A 4 A A 4 1_555 B N3 U 6 B U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 A 4 A A 4 1_555 B N3 U 11 B U 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 A 4 A A 4 1_555 B O4 U 11 B U 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog13 A N3 U 5 A U 5 1_555 B O6 G 10 B G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog14 A O2 U 5 A U 5 1_555 B N1 G 10 B G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog15 A N3 U 6 A U 6 1_555 B N7 A 4 B A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog16 A O2 U 6 A U 6 1_555 B N6 A 4 B A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 C 8 A C 8 1_555 B N1 G 9 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 C 8 A C 8 1_555 B O6 G 9 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 C 8 A C 8 1_555 B N2 G 9 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-U MISPAIR' hydrog20 A N1 G 9 A G 9 1_555 B O2 U 8 B U 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog21 A N1 G 10 A G 10 1_555 B O2 U 5 B U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog22 A O6 G 10 A G 10 1_555 B N3 U 5 B U 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 U 11 A U 11 1_555 B N1 A 4 B A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O4 U 11 A U 11 1_555 B N6 A 4 B A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 A 12 A A 12 1_555 B N3 U 3 B U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N6 A 12 A A 12 1_555 B O4 U 3 B U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 CBR 13 A CBR 13 1_555 B N1 G 2 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 CBR 13 A CBR 13 1_555 B O6 G 2 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 CBR 13 A CBR 13 1_555 B N2 G 2 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N3 C 14 A C 14 1_555 B N1 G 1 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N4 C 14 A C 14 1_555 B O6 G 1 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O2 C 14 A C 14 1_555 B N2 G 1 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1IK5 _atom_sites.fract_transf_matrix[1][1] 0.016656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009941 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 98 98 MG MG2 . D 3 MG B 1 99 99 MG MG2 . E 4 HOH A 1 31 31 HOH HOH . E 4 HOH A 2 32 32 HOH HOH . E 4 HOH A 3 33 33 HOH HOH . E 4 HOH A 4 35 35 HOH HOH . E 4 HOH A 5 38 38 HOH HOH . E 4 HOH A 6 39 39 HOH HOH . E 4 HOH A 7 40 40 HOH HOH . E 4 HOH A 8 44 44 HOH HOH . E 4 HOH A 9 45 45 HOH HOH . E 4 HOH A 10 47 47 HOH HOH . E 4 HOH A 11 51 51 HOH HOH . E 4 HOH A 12 53 53 HOH HOH . E 4 HOH A 13 55 55 HOH HOH . E 4 HOH A 14 56 56 HOH HOH . E 4 HOH A 15 59 59 HOH HOH . E 4 HOH A 16 61 61 HOH HOH . E 4 HOH A 17 62 62 HOH HOH . E 4 HOH A 18 65 65 HOH HOH . E 4 HOH A 19 66 66 HOH HOH . E 4 HOH A 20 69 69 HOH HOH . E 4 HOH A 21 70 70 HOH HOH . E 4 HOH A 22 74 74 HOH HOH . E 4 HOH A 23 77 77 HOH HOH . E 4 HOH A 24 78 78 HOH HOH . E 4 HOH A 25 83 83 HOH HOH . E 4 HOH A 26 84 84 HOH HOH . E 4 HOH A 27 85 85 HOH HOH . E 4 HOH A 28 86 86 HOH HOH . E 4 HOH A 29 87 87 HOH HOH . E 4 HOH A 30 92 92 HOH HOH . E 4 HOH A 31 95 95 HOH HOH . F 4 HOH B 1 29 29 HOH HOH . F 4 HOH B 2 30 30 HOH HOH . F 4 HOH B 3 34 34 HOH HOH . F 4 HOH B 4 36 36 HOH HOH . F 4 HOH B 5 37 37 HOH HOH . F 4 HOH B 6 41 41 HOH HOH . F 4 HOH B 7 42 42 HOH HOH . F 4 HOH B 8 43 43 HOH HOH . F 4 HOH B 9 46 46 HOH HOH . F 4 HOH B 10 48 48 HOH HOH . F 4 HOH B 11 49 49 HOH HOH . F 4 HOH B 12 50 50 HOH HOH . F 4 HOH B 13 52 52 HOH HOH . F 4 HOH B 14 54 54 HOH HOH . F 4 HOH B 15 57 57 HOH HOH . F 4 HOH B 16 60 60 HOH HOH . F 4 HOH B 17 63 63 HOH HOH . F 4 HOH B 18 64 64 HOH HOH . F 4 HOH B 19 67 67 HOH HOH . F 4 HOH B 20 68 68 HOH HOH . F 4 HOH B 21 71 71 HOH HOH . F 4 HOH B 22 73 73 HOH HOH . F 4 HOH B 23 75 75 HOH HOH . F 4 HOH B 24 76 76 HOH HOH . F 4 HOH B 25 79 79 HOH HOH . F 4 HOH B 26 80 80 HOH HOH . F 4 HOH B 27 81 81 HOH HOH . F 4 HOH B 28 82 82 HOH HOH . F 4 HOH B 29 88 88 HOH HOH . F 4 HOH B 30 89 89 HOH HOH . F 4 HOH B 31 90 90 HOH HOH . F 4 HOH B 32 91 91 HOH HOH . F 4 HOH B 33 93 93 HOH HOH . F 4 HOH B 34 94 94 HOH HOH . F 4 HOH B 35 96 96 HOH HOH . F 4 HOH B 36 97 97 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.515 _atom_site.Cartn_y -6.812 _atom_site.Cartn_z 12.159 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 99 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #