data_1IKY
#
_model_server_result.job_id            ieJX895BKFGYY4d8kzV5xw 
_model_server_result.datetime_utc      '2025-02-27 02:33:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1iky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2000}' 
#
_entry.id    1IKY 
#
_exptl.entry_id    1IKY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              382.436 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[2-(3-ACETYL-2-HYDROXY-6-METHOXY-PHENYL)-CYCLOPROPYL]-3-(5-CYANO-PYRIDIN-2-YL)-THIOUREA 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1IKY 
_cell.length_a            120.34 
_cell.length_b            156.54 
_cell.length_c            156.47 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1IKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_557 -x,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 0 0 391.175 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H18 N4 O3 S' 
_chem_comp.formula_weight    382.436 
_chem_comp.id                MSD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[2-(3-ACETYL-2-HYDROXY-6-METHOXY-PHENYL)-CYCLOPROPYL]-3-(5-CYANO-PYRIDIN-2-YL)-THIOUREA 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 MSD doub 237 n y 
C2 C7 MSD sing 238 n y 
C2 C42 MSD sing 239 n n 
C3 N4 MSD sing 240 n y 
C3 HC3 MSD sing 241 n n 
N4 C5 MSD doub 242 n y 
C5 C6 MSD sing 243 n y 
C5 N8 MSD sing 244 n n 
C6 C7 MSD doub 245 n y 
C6 HC6 MSD sing 246 n n 
C7 HC7 MSD sing 247 n n 
N8 C9 MSD sing 248 n n 
N8 HN8 MSD sing 249 n n 
C9 S10 MSD doub 250 n n 
C9 N11 MSD sing 251 n n 
N11 C12 MSD sing 252 n n 
N11 H11N MSD sing 253 n n 
C12 C13 MSD sing 254 n n 
C12 C14 MSD sing 255 n n 
C12 H12C MSD sing 256 n n 
C13 C14 MSD sing 257 n n 
C13 H131 MSD sing 258 n n 
C13 H132 MSD sing 259 n n 
C14 C15 MSD sing 260 n n 
C14 H14C MSD sing 261 n n 
C15 C16 MSD doub 262 n y 
C15 C21 MSD sing 263 n y 
C16 C18 MSD sing 264 n y 
C16 O41 MSD sing 265 n n 
C18 C19 MSD doub 266 n y 
C18 H18C MSD sing 267 n n 
C19 C20 MSD sing 268 n y 
C19 H19C MSD sing 269 n n 
C20 C21 MSD doub 270 n y 
C20 C23 MSD sing 271 n n 
C21 O22 MSD sing 272 n n 
O22 H22O MSD sing 273 n n 
C23 O24 MSD doub 274 n n 
C23 C25 MSD sing 275 n n 
C25 H251 MSD sing 276 n n 
C25 H252 MSD sing 277 n n 
C25 H253 MSD sing 278 n n 
O41 C44 MSD sing 279 n n 
C42 N43 MSD trip 280 n n 
C44 H441 MSD sing 281 n n 
C44 H442 MSD sing 282 n n 
C44 H443 MSD sing 283 n n 
#
_atom_sites.entry_id                     1IKY 
_atom_sites.fract_transf_matrix[1][1]    0.00831 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006388 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006391 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MSD A 1 2000 2000 MSD MSD . 
D 4 HOH A 1 3002 3002 HOH HOH . 
D 4 HOH A 2 3009 3009 HOH HOH . 
D 4 HOH A 3 3011 3011 HOH HOH . 
D 4 HOH A 4 3015 3015 HOH HOH . 
D 4 HOH A 5 3022 3022 HOH HOH . 
D 4 HOH A 6 3025 3025 HOH HOH . 
D 4 HOH A 7 3028 3028 HOH HOH . 
D 4 HOH A 8 3034 3034 HOH HOH . 
E 4 HOH B 1 3001 3001 HOH HOH . 
E 4 HOH B 2 3003 3003 HOH HOH . 
E 4 HOH B 3 3005 3005 HOH HOH . 
E 4 HOH B 4 3007 3007 HOH HOH . 
E 4 HOH B 5 3010 3010 HOH HOH . 
E 4 HOH B 6 3013 3013 HOH HOH . 
E 4 HOH B 7 3016 3016 HOH HOH . 
E 4 HOH B 8 3023 3023 HOH HOH . 
E 4 HOH B 9 3024 3024 HOH HOH . 
E 4 HOH B 10 3026 3026 HOH HOH . 
E 4 HOH B 11 3027 3027 HOH HOH . 
E 4 HOH B 12 3029 3029 HOH HOH . 
E 4 HOH B 13 3030 3030 HOH HOH . 
E 4 HOH B 14 3031 3031 HOH HOH . 
E 4 HOH B 15 3032 3032 HOH HOH . 
E 4 HOH B 16 3033 3033 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 MSD . . . C 3 -6.745 144.932 173.087 1 38.08 ? C2 MSD 2000 A 1 
HETATM 2 C C3 MSD . . . C 3 -8.038 144.423 173.434 1 36.76 ? C3 MSD 2000 A 1 
HETATM 3 N N4 MSD . . . C 3 -8.691 143.587 172.534 1 36.69 ? N4 MSD 2000 A 1 
HETATM 4 C C5 MSD . . . C 3 -8.154 143.204 171.29 1 36.09 ? C5 MSD 2000 A 1 
HETATM 5 C C6 MSD . . . C 3 -6.863 143.682 170.902 1 36.32 ? C6 MSD 2000 A 1 
HETATM 6 C C7 MSD . . . C 3 -6.161 144.549 171.806 1 36.81 ? C7 MSD 2000 A 1 
HETATM 7 N N8 MSD . . . C 3 -8.922 142.344 170.438 1 35.8 ? N8 MSD 2000 A 1 
HETATM 8 C C9 MSD . . . C 3 -10.242 142.031 170.576 1 37.72 ? C9 MSD 2000 A 1 
HETATM 9 S S10 MSD . . . C 3 -10.804 141.236 169.725 1 40.33 ? S10 MSD 2000 A 1 
HETATM 10 N N11 MSD . . . C 3 -10.912 142.595 171.64 1 35.04 ? N11 MSD 2000 A 1 
HETATM 11 C C12 MSD . . . C 3 -12.298 142.322 171.873 1 34.26 ? C12 MSD 2000 A 1 
HETATM 12 C C13 MSD . . . C 3 -13.066 143.356 172.701 1 33.45 ? C13 MSD 2000 A 1 
HETATM 13 C C14 MSD . . . C 3 -13.023 141.817 173.067 1 32.51 ? C14 MSD 2000 A 1 
HETATM 14 C C15 MSD . . . C 3 -12.226 141.441 174.357 1 32.15 ? C15 MSD 2000 A 1 
HETATM 15 C C16 MSD . . . C 3 -12.406 140.102 174.828 1 33.35 ? C16 MSD 2000 A 1 
HETATM 16 C C18 MSD . . . C 3 -11.719 139.655 176.028 1 33.24 ? C18 MSD 2000 A 1 
HETATM 17 C C19 MSD . . . C 3 -10.862 140.531 176.757 1 29.34 ? C19 MSD 2000 A 1 
HETATM 18 C C20 MSD . . . C 3 -10.643 141.886 176.321 1 29.24 ? C20 MSD 2000 A 1 
HETATM 19 C C21 MSD . . . C 3 -11.327 142.357 175.108 1 29.75 ? C21 MSD 2000 A 1 
HETATM 20 O O22 MSD . . . C 3 -11.143 143.65 174.66 1 28.24 ? O22 MSD 2000 A 1 
HETATM 21 C C23 MSD . . . C 3 -9.71 142.804 177.129 1 31.14 ? C23 MSD 2000 A 1 
HETATM 22 O O24 MSD . . . C 3 -9.534 143.954 176.734 1 33.6 ? O24 MSD 2000 A 1 
HETATM 23 C C25 MSD . . . C 3 -8.992 142.354 178.397 1 29.45 ? C25 MSD 2000 A 1 
HETATM 24 O O41 MSD . . . C 3 -13.224 139.269 174.147 1 34.44 ? O41 MSD 2000 A 1 
HETATM 25 C C42 MSD . . . C 3 -5.92 145.859 173.961 1 39.32 ? C42 MSD 2000 A 1 
HETATM 26 N N43 MSD . . . C 3 -5.411 146.642 174.689 1 41.27 ? N43 MSD 2000 A 1 
HETATM 27 C C44 MSD . . . C 3 -12.998 138.049 173.942 1 36.09 ? C44 MSD 2000 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#