data_1IL5
#
_model_server_result.job_id            87adKdfKfm3q2aJeNkiJQw 
_model_server_result.datetime_utc      '2024-11-24 02:49:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1il5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    1IL5 
#
_exptl.entry_id    1IL5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'CHEMICAL SYNTHESIS' 
_entity.formula_weight              142.116 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,4-DIAMINO-4,6-DIHYDROXYPYRIMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         93.9 
_cell.angle_beta          112.4 
_cell.angle_gamma         84.43 
_cell.entry_id            1IL5 
_cell.length_a            42.07 
_cell.length_b            65.95 
_cell.length_c            50.81 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H6 N4 O2' 
_chem_comp.formula_weight    142.116 
_chem_comp.id                DDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,4-DIAMINO-4,6-DIHYDROXYPYRIMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 N7 DDP sing 83 n n 
C5 C4 DDP doub 84 n y 
C5 C6 DDP sing 85 n y 
N7 H71 DDP sing 86 n n 
N7 H72 DDP sing 87 n n 
C4 N3 DDP sing 88 n y 
C4 O9 DDP sing 89 n n 
N3 C2 DDP doub 90 n y 
C2 N2 DDP sing 91 n n 
C2 N1 DDP sing 92 n y 
N2 H21 DDP sing 93 n n 
N2 H22 DDP sing 94 n n 
N1 C6 DDP doub 95 n y 
C6 O6 DDP sing 96 n n 
O6 H61 DDP sing 97 n n 
O9 H91 DDP sing 98 n n 
#
_atom_sites.entry_id                     1IL5 
_atom_sites.fract_transf_matrix[1][1]    0.02377 
_atom_sites.fract_transf_matrix[1][2]    -0.002319 
_atom_sites.fract_transf_matrix[1][3]    0.009724 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015235 
_atom_sites.fract_transf_matrix[2][3]    0.000513 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021299 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DDP A 1 301 301 DDP DDP . 
D 3 HOH A 1 302 1 HOH HOH . 
D 3 HOH A 2 303 5 HOH HOH . 
D 3 HOH A 3 304 6 HOH HOH . 
D 3 HOH A 4 305 10 HOH HOH . 
D 3 HOH A 5 306 12 HOH HOH . 
D 3 HOH A 6 307 14 HOH HOH . 
D 3 HOH A 7 308 15 HOH HOH . 
D 3 HOH A 8 309 16 HOH HOH . 
D 3 HOH A 9 310 17 HOH HOH . 
D 3 HOH A 10 311 18 HOH HOH . 
D 3 HOH A 11 312 24 HOH HOH . 
D 3 HOH A 12 313 25 HOH HOH . 
D 3 HOH A 13 314 26 HOH HOH . 
D 3 HOH A 14 315 28 HOH HOH . 
D 3 HOH A 15 316 29 HOH HOH . 
D 3 HOH A 16 317 32 HOH HOH . 
D 3 HOH A 17 318 33 HOH HOH . 
D 3 HOH A 18 319 34 HOH HOH . 
E 3 HOH B 1 268 2 HOH HOH . 
E 3 HOH B 2 269 3 HOH HOH . 
E 3 HOH B 3 270 4 HOH HOH . 
E 3 HOH B 4 271 7 HOH HOH . 
E 3 HOH B 5 272 8 HOH HOH . 
E 3 HOH B 6 273 9 HOH HOH . 
E 3 HOH B 7 274 11 HOH HOH . 
E 3 HOH B 8 275 13 HOH HOH . 
E 3 HOH B 9 276 19 HOH HOH . 
E 3 HOH B 10 277 20 HOH HOH . 
E 3 HOH B 11 278 21 HOH HOH . 
E 3 HOH B 12 279 22 HOH HOH . 
E 3 HOH B 13 280 23 HOH HOH . 
E 3 HOH B 14 281 27 HOH HOH . 
E 3 HOH B 15 282 30 HOH HOH . 
E 3 HOH B 16 283 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 DDP . . . C 2 -15.305 36.134 39.568 0.92 34.09 ? C5 DDP 301 A 1 
HETATM 2 N N7 DDP . . . C 2 -14.854 36.411 38.267 0.92 35.61 ? N7 DDP 301 A 1 
HETATM 3 C C4 DDP . . . C 2 -14.438 35.854 40.641 0.92 34.6 ? C4 DDP 301 A 1 
HETATM 4 N N3 DDP . . . C 2 -14.955 35.594 41.867 0.92 34.19 ? N3 DDP 301 A 1 
HETATM 5 C C2 DDP . . . C 2 -16.285 35.597 42.088 0.92 33.44 ? C2 DDP 301 A 1 
HETATM 6 N N2 DDP . . . C 2 -16.783 35.322 43.37 0.92 33.38 ? N2 DDP 301 A 1 
HETATM 7 N N1 DDP . . . C 2 -17.134 35.866 41.064 0.92 35.07 ? N1 DDP 301 A 1 
HETATM 8 C C6 DDP . . . C 2 -16.684 36.135 39.815 0.92 34.87 ? C6 DDP 301 A 1 
HETATM 9 O O6 DDP . . . C 2 -17.511 36.36 38.972 0.92 33.5 ? O6 DDP 301 A 1 
HETATM 10 O O9 DDP . . . C 2 -13.058 35.841 40.457 0.92 34.04 ? O9 DDP 301 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#