data_1ILX # _model_server_result.job_id '_Cz3nIt1TN8roI2sAEklZg' _model_server_result.datetime_utc '2025-03-05 04:20:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ilx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HC","auth_seq_id":163}' # _entry.id 1ILX # _exptl.entry_id 1ILX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 893.489 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 70 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ILX _cell.length_a 130.01 _cell.length_b 226.72 _cell.length_c 308.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ILX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 W N N ? 11 X N N ? 11 Y N N ? 11 AA N N ? 11 BA N N ? 11 DA N N ? 11 FA N N ? 11 HA N N ? 11 IA N N ? 11 JA N N ? 11 KA N N ? 11 LA N N ? 11 MA N N ? 11 NA N N ? 11 OA N N ? 11 PA N N ? 11 QA N N ? 11 RA N N ? 11 SA N N ? 11 TA N N ? 11 UA N N ? 11 VA N N ? 11 WA N N ? 11 XA N N ? 11 YA N N ? 11 ZA N N ? 11 AB N N ? 11 BB N N ? 11 CB N N ? 11 DB N N ? 11 EB N N ? 11 FB N N ? 11 GB N N ? 11 HB N N ? 11 JB N N ? 11 QB N N ? 11 RB N N ? 11 SB N N ? 11 UB N N ? 11 VB N N ? 11 XB N N ? 11 ZB N N ? 11 BC N N ? 11 CC N N ? 11 DC N N ? 11 EC N N ? 11 FC N N ? 11 GC N N ? 11 HC N N ? 11 IC N N ? 11 JC N N ? 11 KC N N ? 11 LC N N ? 11 MC N N ? 11 NC N N ? 11 OC N N ? 11 PC N N ? 11 QC N N ? 11 RC N N ? 11 SC N N ? 11 TC N N ? 11 UC N N ? 11 VC N N ? 11 WC N N ? 11 XC N N ? 11 YC N N ? 11 ZC N N ? 11 AD N N ? 11 BD N N ? 11 DD N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 T MN MN . A MN 171 1_555 V MN MN . A MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc2 U MN MN . A MN 172 1_555 V MN MN . A MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc3 NB MN MN . J MN 171 1_555 PB MN MN . J MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc4 OB MN MN . J MN 172 1_555 PB MN MN . J MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? # _chem_comp.formula 'C55 H72 Mg N4 O5' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA CLA sing 1 n n MG NB CLA sing 2 n n MG NC CLA sing 3 n n MG ND CLA sing 4 n n CHA C1A CLA sing 5 n n CHA C4D CLA doub 6 n n CHA CBD CLA sing 7 n n CHB C4A CLA doub 8 n n CHB C1B CLA sing 9 n n CHB HHB CLA sing 10 n n CHC C4B CLA sing 11 n n CHC C1C CLA doub 12 n n CHC HHC CLA sing 13 n n CHD C4C CLA sing 14 n n CHD C1D CLA doub 15 n n CHD HHD CLA sing 16 n n NA C1A CLA doub 17 n n NA C4A CLA sing 18 n n C1A C2A CLA sing 19 n n C2A C3A CLA sing 20 n n C2A CAA CLA sing 21 n n C2A H2A CLA sing 22 n n C3A C4A CLA sing 23 n n C3A CMA CLA sing 24 n n C3A H3A CLA sing 25 n n CMA HMA1 CLA sing 26 n n CMA HMA2 CLA sing 27 n n CMA HMA3 CLA sing 28 n n CAA CBA CLA sing 29 n n CAA HAA1 CLA sing 30 n n CAA HAA2 CLA sing 31 n n CBA CGA CLA sing 32 n n CBA HBA1 CLA sing 33 n n CBA HBA2 CLA sing 34 n n CGA O1A CLA doub 35 n n CGA O2A CLA sing 36 n n O2A C1 CLA sing 37 n n NB C1B CLA sing 38 n y NB C4B CLA sing 39 n y C1B C2B CLA doub 40 n y C2B C3B CLA sing 41 n y C2B CMB CLA sing 42 n n C3B C4B CLA doub 43 n y C3B CAB CLA sing 44 n n CMB HMB1 CLA sing 45 n n CMB HMB2 CLA sing 46 n n CMB HMB3 CLA sing 47 n n CAB CBB CLA doub 48 n n CAB HAB CLA sing 49 n n CBB HBB1 CLA sing 50 n n CBB HBB2 CLA sing 51 n n NC C1C CLA sing 52 n n NC C4C CLA doub 53 n n C1C C2C CLA sing 54 n n C2C C3C CLA doub 55 n n C2C CMC CLA sing 56 n n C3C C4C CLA sing 57 n n C3C CAC CLA sing 58 n n CMC HMC1 CLA sing 59 n n CMC HMC2 CLA sing 60 n n CMC HMC3 CLA sing 61 n n CAC CBC CLA sing 62 n n CAC HAC1 CLA sing 63 n n CAC HAC2 CLA sing 64 n n CBC HBC1 CLA sing 65 n n CBC HBC2 CLA sing 66 n n CBC HBC3 CLA sing 67 n n ND C1D CLA sing 68 n n ND C4D CLA sing 69 n n C1D C2D CLA sing 70 n n C2D C3D CLA doub 71 n n C2D CMD CLA sing 72 n n C3D C4D CLA sing 73 n n C3D CAD CLA sing 74 n n CMD HMD1 CLA sing 75 n n CMD HMD2 CLA sing 76 n n CMD HMD3 CLA sing 77 n n CAD OBD CLA doub 78 n n CAD CBD CLA sing 79 n n CBD CGD CLA sing 80 n n CBD HBD CLA sing 81 n n CGD O1D CLA doub 82 n n CGD O2D CLA sing 83 n n O2D CED CLA sing 84 n n CED HED1 CLA sing 85 n n CED HED2 CLA sing 86 n n CED HED3 CLA sing 87 n n C1 C2 CLA sing 88 n n C1 H11 CLA sing 89 n n C1 H12 CLA sing 90 n n C2 C3 CLA doub 91 e n C2 H2 CLA sing 92 n n C3 C4 CLA sing 93 n n C3 C5 CLA sing 94 n n C4 H41 CLA sing 95 n n C4 H42 CLA sing 96 n n C4 H43 CLA sing 97 n n C5 C6 CLA sing 98 n n C5 H51 CLA sing 99 n n C5 H52 CLA sing 100 n n C6 C7 CLA sing 101 n n C6 H61 CLA sing 102 n n C6 H62 CLA sing 103 n n C7 C8 CLA sing 104 n n C7 H71 CLA sing 105 n n C7 H72 CLA sing 106 n n C8 C9 CLA sing 107 n n C8 C10 CLA sing 108 n n C8 H8 CLA sing 109 n n C9 H91 CLA sing 110 n n C9 H92 CLA sing 111 n n C9 H93 CLA sing 112 n n C10 C11 CLA sing 113 n n C10 H101 CLA sing 114 n n C10 H102 CLA sing 115 n n C11 C12 CLA sing 116 n n C11 H111 CLA sing 117 n n C11 H112 CLA sing 118 n n C12 C13 CLA sing 119 n n C12 H121 CLA sing 120 n n C12 H122 CLA sing 121 n n C13 C14 CLA sing 122 n n C13 C15 CLA sing 123 n n C13 H13 CLA sing 124 n n C14 H141 CLA sing 125 n n C14 H142 CLA sing 126 n n C14 H143 CLA sing 127 n n C15 C16 CLA sing 128 n n C15 H151 CLA sing 129 n n C15 H152 CLA sing 130 n n C16 C17 CLA sing 131 n n C16 H161 CLA sing 132 n n C16 H162 CLA sing 133 n n C17 C18 CLA sing 134 n n C17 H171 CLA sing 135 n n C17 H172 CLA sing 136 n n C18 C19 CLA sing 137 n n C18 C20 CLA sing 138 n n C18 H18 CLA sing 139 n n C19 H191 CLA sing 140 n n C19 H192 CLA sing 141 n n C19 H193 CLA sing 142 n n C20 H201 CLA sing 143 n n C20 H202 CLA sing 144 n n C20 H203 CLA sing 145 n n # _atom_sites.entry_id 1ILX _atom_sites.fract_transf_matrix[1][1] 0.007692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 MN A 1 170 1 MN MN . T 10 MN A 1 171 2 MN MN . U 10 MN A 1 172 3 MN MN . V 10 MN A 1 173 4 MN MN . W 11 CLA A 1 174 13 CLA CLA . X 11 CLA A 1 175 15 CLA CLA . Y 11 CLA A 1 176 16 CLA CLA . Z 12 PHO A 1 177 18 PHO PHO . AA 11 CLA A 1 178 19 CLA CLA . BA 11 CLA A 1 179 24 CLA CLA . CA 13 FE B 1 175 5 FE FE . DA 11 CLA B 1 176 14 CLA CLA . EA 12 PHO B 1 177 17 PHO PHO . FA 11 CLA B 1 178 20 CLA CLA . GA 14 PL9 B 1 179 52 PL9 PLA . HA 11 CLA C 1 157 21 CLA CLA . IA 11 CLA C 1 158 22 CLA CLA . JA 11 CLA C 1 159 23 CLA CLA . KA 11 CLA C 1 160 25 CLA CLA . LA 11 CLA C 1 161 26 CLA CLA . MA 11 CLA C 1 162 27 CLA CLA . NA 11 CLA C 1 163 28 CLA CLA . OA 11 CLA C 1 164 29 CLA CLA . PA 11 CLA C 1 165 30 CLA CLA . QA 11 CLA C 1 166 31 CLA CLA . RA 11 CLA C 1 167 32 CLA CLA . SA 11 CLA C 1 168 33 CLA CLA . TA 11 CLA D 1 156 35 CLA CLA . UA 11 CLA D 1 157 36 CLA CLA . VA 11 CLA D 1 158 37 CLA CLA . WA 11 CLA D 1 159 38 CLA CLA . XA 11 CLA D 1 160 39 CLA CLA . YA 11 CLA D 1 161 40 CLA CLA . ZA 11 CLA D 1 162 41 CLA CLA . AB 11 CLA D 1 163 42 CLA CLA . BB 11 CLA D 1 164 43 CLA CLA . CB 11 CLA D 1 165 44 CLA CLA . DB 11 CLA D 1 166 45 CLA CLA . EB 11 CLA D 1 167 46 CLA CLA . FB 11 CLA D 1 168 47 CLA CLA . GB 11 CLA D 1 169 48 CLA CLA . HB 11 CLA D 1 170 49 CLA CLA . IB 15 HEM F 1 50 50 HEM HEM . JB 11 CLA G 1 313 34 CLA CLA . KB 16 CD H 1 116 6 CD CD . LB 15 HEM I 1 88 51 HEM HEM . MB 10 MN J 1 170 7 MN MN . NB 10 MN J 1 171 8 MN MN . OB 10 MN J 1 172 9 MN MN . PB 10 MN J 1 173 10 MN MN . QB 11 CLA J 1 174 53 CLA CLA . RB 11 CLA J 1 175 55 CLA CLA . SB 11 CLA J 1 176 56 CLA CLA . TB 12 PHO J 1 177 58 PHO PHO . UB 11 CLA J 1 178 59 CLA CLA . VB 11 CLA J 1 179 64 CLA CLA . WB 13 FE K 1 175 11 FE FE . XB 11 CLA K 1 176 54 CLA CLA . YB 12 PHO K 1 177 57 PHO PHO . ZB 11 CLA K 1 178 60 CLA CLA . AC 14 PL9 K 1 179 92 PL9 PLA . BC 11 CLA L 1 157 61 CLA CLA . CC 11 CLA L 1 158 62 CLA CLA . DC 11 CLA L 1 159 63 CLA CLA . EC 11 CLA L 1 160 65 CLA CLA . FC 11 CLA L 1 161 66 CLA CLA . GC 11 CLA L 1 162 67 CLA CLA . HC 11 CLA L 1 163 68 CLA CLA . IC 11 CLA L 1 164 69 CLA CLA . JC 11 CLA L 1 165 70 CLA CLA . KC 11 CLA L 1 166 71 CLA CLA . LC 11 CLA L 1 167 72 CLA CLA . MC 11 CLA L 1 168 73 CLA CLA . NC 11 CLA M 1 156 75 CLA CLA . OC 11 CLA M 1 157 76 CLA CLA . PC 11 CLA M 1 158 77 CLA CLA . QC 11 CLA M 1 159 78 CLA CLA . RC 11 CLA M 1 160 79 CLA CLA . SC 11 CLA M 1 161 80 CLA CLA . TC 11 CLA M 1 162 81 CLA CLA . UC 11 CLA M 1 163 82 CLA CLA . VC 11 CLA M 1 164 83 CLA CLA . WC 11 CLA M 1 165 84 CLA CLA . XC 11 CLA M 1 166 85 CLA CLA . YC 11 CLA M 1 167 86 CLA CLA . ZC 11 CLA M 1 168 87 CLA CLA . AD 11 CLA M 1 169 88 CLA CLA . BD 11 CLA M 1 170 89 CLA CLA . CD 15 HEM O 1 90 90 HEM HEM . DD 11 CLA P 1 313 74 CLA CLA . ED 16 CD Q 1 116 12 CD CD . FD 15 HEM R 1 91 91 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . HC 11 -7.571 -20.976 -13.092 1 0 ? MG CLA 163 L 1 HETATM 2 C CHA CLA . . . HC 11 -10.283 -22.407 -11.513 1 0 ? CHA CLA 163 L 1 HETATM 3 C CHB CLA . . . HC 11 -5.902 -24.004 -12.964 1 0 ? CHB CLA 163 L 1 HETATM 4 C CHC CLA . . . HC 11 -4.843 -19.611 -14.685 1 0 ? CHC CLA 163 L 1 HETATM 5 C CHD CLA . . . HC 11 -9.121 -17.963 -13.011 1 0 ? CHD CLA 163 L 1 HETATM 6 N NA CLA . . . HC 11 -8.025 -22.948 -12.302 1 0 ? NA CLA 163 L 1 HETATM 7 C C1A CLA . . . HC 11 -9.231 -23.298 -11.72 1 0 ? C1A CLA 163 L 1 HETATM 8 C C2A CLA . . . HC 11 -9.211 -24.777 -11.356 1 0 ? C2A CLA 163 L 1 HETATM 9 C C3A CLA . . . HC 11 -7.821 -25.242 -11.762 1 0 ? C3A CLA 163 L 1 HETATM 10 C C4A CLA . . . HC 11 -7.186 -24.015 -12.383 1 0 ? C4A CLA 163 L 1 HETATM 11 N NB CLA . . . HC 11 -5.701 -21.704 -13.707 1 0 ? NB CLA 163 L 1 HETATM 12 C C1B CLA . . . HC 11 -5.252 -22.994 -13.568 1 0 ? C1B CLA 163 L 1 HETATM 13 C C2B CLA . . . HC 11 -3.978 -23.132 -14.263 1 0 ? C2B CLA 163 L 1 HETATM 14 C C3B CLA . . . HC 11 -3.654 -21.894 -14.775 1 0 ? C3B CLA 163 L 1 HETATM 15 C C4B CLA . . . HC 11 -4.745 -20.974 -14.383 1 0 ? C4B CLA 163 L 1 HETATM 16 N NC CLA . . . HC 11 -7.059 -19.103 -13.708 1 0 ? NC CLA 163 L 1 HETATM 17 C C1C CLA . . . HC 11 -5.933 -18.743 -14.362 1 0 ? C1C CLA 163 L 1 HETATM 18 C C2C CLA . . . HC 11 -6.022 -17.331 -14.709 1 0 ? C2C CLA 163 L 1 HETATM 19 C C3C CLA . . . HC 11 -7.216 -16.862 -14.248 1 0 ? C3C CLA 163 L 1 HETATM 20 C C4C CLA . . . HC 11 -7.865 -17.988 -13.593 1 0 ? C4C CLA 163 L 1 HETATM 21 N ND CLA . . . HC 11 -9.269 -20.27 -12.415 1 0 ? ND CLA 163 L 1 HETATM 22 C C1D CLA . . . HC 11 -9.797 -19.052 -12.468 1 0 ? C1D CLA 163 L 1 HETATM 23 C C2D CLA . . . HC 11 -11.12 -19.027 -11.962 1 0 ? C2D CLA 163 L 1 HETATM 24 C C3D CLA . . . HC 11 -11.372 -20.328 -11.568 1 0 ? C3D CLA 163 L 1 HETATM 25 C C4D CLA . . . HC 11 -10.222 -21.066 -11.853 1 0 ? C4D CLA 163 L 1 HETATM 26 C CAD CLA . . . HC 11 -12.332 -21.202 -10.994 1 0 ? CAD CLA 163 L 1 HETATM 27 C CBD CLA . . . HC 11 -11.673 -22.611 -10.897 1 0 ? CBD CLA 163 L 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 27 #