data_1ILX # _model_server_result.job_id wjJVQMe5d6R0uXNLm99uvA _model_server_result.datetime_utc '2025-03-05 04:31:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ilx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TB","auth_seq_id":177}' # _entry.id 1ILX # _exptl.entry_id 1ILX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 871.2 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHEOPHYTIN A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ILX _cell.length_a 130.01 _cell.length_b 226.72 _cell.length_c 308.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ILX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 Z N N ? 12 EA N N ? 12 TB N N ? 12 YB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 T MN MN . A MN 171 1_555 V MN MN . A MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc2 U MN MN . A MN 172 1_555 V MN MN . A MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc3 NB MN MN . J MN 171 1_555 PB MN MN . J MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc4 OB MN MN . J MN 172 1_555 PB MN MN . J MN 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? # _chem_comp.formula 'C55 H74 N4 O5' _chem_comp.formula_weight 871.2 _chem_comp.id PHO _chem_comp.mon_nstd_flag . _chem_comp.name 'PHEOPHYTIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HNB NB PHO sing 228 n n HND ND PHO sing 229 n n CHA C1A PHO sing 230 n y CHA C4D PHO doub 231 n y CHA CBD PHO sing 232 n n CHB C4A PHO doub 233 n y CHB C1B PHO sing 234 n y CHB HHB PHO sing 235 n n CHC C4B PHO sing 236 n y CHC C1C PHO doub 237 n y CHC HHC PHO sing 238 n n CHD C4C PHO sing 239 n y CHD C1D PHO doub 240 n y CHD HHD PHO sing 241 n n NA C1A PHO doub 242 n y NA C4A PHO sing 243 n y C1A C2A PHO sing 244 n n C2A C3A PHO sing 245 n n C2A CAA PHO sing 246 n n C2A H2A PHO sing 247 n n C3A C4A PHO sing 248 n n C3A CMA PHO sing 249 n n C3A H3A PHO sing 250 n n CMA HMA1 PHO sing 251 n n CMA HMA2 PHO sing 252 n n CMA HMA3 PHO sing 253 n n CAA CBA PHO sing 254 n n CAA HAA1 PHO sing 255 n n CAA HAA2 PHO sing 256 n n CBA CGA PHO sing 257 n n CBA HBA1 PHO sing 258 n n CBA HBA2 PHO sing 259 n n CGA O1A PHO doub 260 n n CGA O2A PHO sing 261 n n O2A C1 PHO sing 262 n n NB C1B PHO sing 263 n y NB C4B PHO sing 264 n y C1B C2B PHO doub 265 n y C2B C3B PHO sing 266 n y C2B CMB PHO sing 267 n n C3B C4B PHO doub 268 n y C3B CAB PHO sing 269 n n CMB HMB1 PHO sing 270 n n CMB HMB2 PHO sing 271 n n CMB HMB3 PHO sing 272 n n CAB CBB PHO doub 273 n n CAB HAB PHO sing 274 n n CBB HBB1 PHO sing 275 n n CBB HBB2 PHO sing 276 n n NC C1C PHO sing 277 n y NC C4C PHO doub 278 n y C1C C2C PHO sing 279 n y C2C C3C PHO doub 280 n y C2C CMC PHO sing 281 n n C3C C4C PHO sing 282 n y C3C CAC PHO sing 283 n n CMC HMC1 PHO sing 284 n n CMC HMC2 PHO sing 285 n n CMC HMC3 PHO sing 286 n n CAC CBC PHO sing 287 n n CAC HAC1 PHO sing 288 n n CAC HAC2 PHO sing 289 n n CBC HBC1 PHO sing 290 n n CBC HBC2 PHO sing 291 n n CBC HBC3 PHO sing 292 n n ND C1D PHO sing 293 n y ND C4D PHO sing 294 n y C1D C2D PHO sing 295 n y C2D C3D PHO doub 296 n y C2D CMD PHO sing 297 n n C3D C4D PHO sing 298 n y C3D CAD PHO sing 299 n n CMD HMD1 PHO sing 300 n n CMD HMD2 PHO sing 301 n n CMD HMD3 PHO sing 302 n n CAD OBD PHO doub 303 n n CAD CBD PHO sing 304 n n CBD CGD PHO sing 305 n n CBD HBD PHO sing 306 n n CGD O1D PHO doub 307 n n CGD O2D PHO sing 308 n n O2D CED PHO sing 309 n n CED HED1 PHO sing 310 n n CED HED2 PHO sing 311 n n CED HED3 PHO sing 312 n n C1 C2 PHO sing 313 n n C1 H11 PHO sing 314 n n C1 H12 PHO sing 315 n n C2 C3 PHO doub 316 e n C2 H2 PHO sing 317 n n C3 C4 PHO sing 318 n n C3 C5 PHO sing 319 n n C4 H41 PHO sing 320 n n C4 H42 PHO sing 321 n n C4 H43 PHO sing 322 n n C5 C6 PHO sing 323 n n C5 H51 PHO sing 324 n n C5 H52 PHO sing 325 n n C6 C7 PHO sing 326 n n C6 H61 PHO sing 327 n n C6 H62 PHO sing 328 n n C7 C8 PHO sing 329 n n C7 H71 PHO sing 330 n n C7 H72 PHO sing 331 n n C8 C9 PHO sing 332 n n C8 C10 PHO sing 333 n n C8 H8 PHO sing 334 n n C9 H91 PHO sing 335 n n C9 H92 PHO sing 336 n n C9 H93 PHO sing 337 n n C10 C11 PHO sing 338 n n C10 H101 PHO sing 339 n n C10 H102 PHO sing 340 n n C11 C12 PHO sing 341 n n C11 H111 PHO sing 342 n n C11 H112 PHO sing 343 n n C12 C13 PHO sing 344 n n C12 H121 PHO sing 345 n n C12 H122 PHO sing 346 n n C13 C14 PHO sing 347 n n C13 C15 PHO sing 348 n n C13 H13 PHO sing 349 n n C14 H141 PHO sing 350 n n C14 H142 PHO sing 351 n n C14 H143 PHO sing 352 n n C15 C16 PHO sing 353 n n C15 H151 PHO sing 354 n n C15 H152 PHO sing 355 n n C16 C17 PHO sing 356 n n C16 H161 PHO sing 357 n n C16 H162 PHO sing 358 n n C17 C18 PHO sing 359 n n C17 H171 PHO sing 360 n n C17 H172 PHO sing 361 n n C18 C19 PHO sing 362 n n C18 C20 PHO sing 363 n n C18 H18 PHO sing 364 n n C19 H191 PHO sing 365 n n C19 H192 PHO sing 366 n n C19 H193 PHO sing 367 n n C20 H201 PHO sing 368 n n C20 H202 PHO sing 369 n n C20 H203 PHO sing 370 n n # _atom_sites.entry_id 1ILX _atom_sites.fract_transf_matrix[1][1] 0.007692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 MN A 1 170 1 MN MN . T 10 MN A 1 171 2 MN MN . U 10 MN A 1 172 3 MN MN . V 10 MN A 1 173 4 MN MN . W 11 CLA A 1 174 13 CLA CLA . X 11 CLA A 1 175 15 CLA CLA . Y 11 CLA A 1 176 16 CLA CLA . Z 12 PHO A 1 177 18 PHO PHO . AA 11 CLA A 1 178 19 CLA CLA . BA 11 CLA A 1 179 24 CLA CLA . CA 13 FE B 1 175 5 FE FE . DA 11 CLA B 1 176 14 CLA CLA . EA 12 PHO B 1 177 17 PHO PHO . FA 11 CLA B 1 178 20 CLA CLA . GA 14 PL9 B 1 179 52 PL9 PLA . HA 11 CLA C 1 157 21 CLA CLA . IA 11 CLA C 1 158 22 CLA CLA . JA 11 CLA C 1 159 23 CLA CLA . KA 11 CLA C 1 160 25 CLA CLA . LA 11 CLA C 1 161 26 CLA CLA . MA 11 CLA C 1 162 27 CLA CLA . NA 11 CLA C 1 163 28 CLA CLA . OA 11 CLA C 1 164 29 CLA CLA . PA 11 CLA C 1 165 30 CLA CLA . QA 11 CLA C 1 166 31 CLA CLA . RA 11 CLA C 1 167 32 CLA CLA . SA 11 CLA C 1 168 33 CLA CLA . TA 11 CLA D 1 156 35 CLA CLA . UA 11 CLA D 1 157 36 CLA CLA . VA 11 CLA D 1 158 37 CLA CLA . WA 11 CLA D 1 159 38 CLA CLA . XA 11 CLA D 1 160 39 CLA CLA . YA 11 CLA D 1 161 40 CLA CLA . ZA 11 CLA D 1 162 41 CLA CLA . AB 11 CLA D 1 163 42 CLA CLA . BB 11 CLA D 1 164 43 CLA CLA . CB 11 CLA D 1 165 44 CLA CLA . DB 11 CLA D 1 166 45 CLA CLA . EB 11 CLA D 1 167 46 CLA CLA . FB 11 CLA D 1 168 47 CLA CLA . GB 11 CLA D 1 169 48 CLA CLA . HB 11 CLA D 1 170 49 CLA CLA . IB 15 HEM F 1 50 50 HEM HEM . JB 11 CLA G 1 313 34 CLA CLA . KB 16 CD H 1 116 6 CD CD . LB 15 HEM I 1 88 51 HEM HEM . MB 10 MN J 1 170 7 MN MN . NB 10 MN J 1 171 8 MN MN . OB 10 MN J 1 172 9 MN MN . PB 10 MN J 1 173 10 MN MN . QB 11 CLA J 1 174 53 CLA CLA . RB 11 CLA J 1 175 55 CLA CLA . SB 11 CLA J 1 176 56 CLA CLA . TB 12 PHO J 1 177 58 PHO PHO . UB 11 CLA J 1 178 59 CLA CLA . VB 11 CLA J 1 179 64 CLA CLA . WB 13 FE K 1 175 11 FE FE . XB 11 CLA K 1 176 54 CLA CLA . YB 12 PHO K 1 177 57 PHO PHO . ZB 11 CLA K 1 178 60 CLA CLA . AC 14 PL9 K 1 179 92 PL9 PLA . BC 11 CLA L 1 157 61 CLA CLA . CC 11 CLA L 1 158 62 CLA CLA . DC 11 CLA L 1 159 63 CLA CLA . EC 11 CLA L 1 160 65 CLA CLA . FC 11 CLA L 1 161 66 CLA CLA . GC 11 CLA L 1 162 67 CLA CLA . HC 11 CLA L 1 163 68 CLA CLA . IC 11 CLA L 1 164 69 CLA CLA . JC 11 CLA L 1 165 70 CLA CLA . KC 11 CLA L 1 166 71 CLA CLA . LC 11 CLA L 1 167 72 CLA CLA . MC 11 CLA L 1 168 73 CLA CLA . NC 11 CLA M 1 156 75 CLA CLA . OC 11 CLA M 1 157 76 CLA CLA . PC 11 CLA M 1 158 77 CLA CLA . QC 11 CLA M 1 159 78 CLA CLA . RC 11 CLA M 1 160 79 CLA CLA . SC 11 CLA M 1 161 80 CLA CLA . TC 11 CLA M 1 162 81 CLA CLA . UC 11 CLA M 1 163 82 CLA CLA . VC 11 CLA M 1 164 83 CLA CLA . WC 11 CLA M 1 165 84 CLA CLA . XC 11 CLA M 1 166 85 CLA CLA . YC 11 CLA M 1 167 86 CLA CLA . ZC 11 CLA M 1 168 87 CLA CLA . AD 11 CLA M 1 169 88 CLA CLA . BD 11 CLA M 1 170 89 CLA CLA . CD 15 HEM O 1 90 90 HEM HEM . DD 11 CLA P 1 313 74 CLA CLA . ED 16 CD Q 1 116 12 CD CD . FD 15 HEM R 1 91 91 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA PHO . . . TB 12 29.944 -7.433 -4.28 1 0 ? CHA PHO 177 J 1 HETATM 2 C CHB PHO . . . TB 12 27.343 -11.001 -2.194 1 0 ? CHB PHO 177 J 1 HETATM 3 C CHC PHO . . . TB 12 25.702 -7.896 1.129 1 0 ? CHC PHO 177 J 1 HETATM 4 C CHD PHO . . . TB 12 28.105 -4.286 -1.108 1 0 ? CHD PHO 177 J 1 HETATM 5 N NA PHO . . . TB 12 28.527 -9.031 -3.074 1 0 ? NA PHO 177 J 1 HETATM 6 C C1A PHO . . . TB 12 29.428 -8.712 -4.075 1 0 ? C1A PHO 177 J 1 HETATM 7 C C2A PHO . . . TB 12 29.75 -9.96 -4.887 1 0 ? C2A PHO 177 J 1 HETATM 8 C C3A PHO . . . TB 12 28.888 -11.046 -4.26 1 0 ? C3A PHO 177 J 1 HETATM 9 C C4A PHO . . . TB 12 28.199 -10.349 -3.104 1 0 ? C4A PHO 177 J 1 HETATM 10 N NB PHO . . . TB 12 26.719 -9.193 -0.702 1 0 ? NB PHO 177 J 1 HETATM 11 C C1B PHO . . . TB 12 26.705 -10.5 -1.121 1 0 ? C1B PHO 177 J 1 HETATM 12 C C2B PHO . . . TB 12 25.953 -11.3 -0.161 1 0 ? C2B PHO 177 J 1 HETATM 13 C C3B PHO . . . TB 12 25.48 -10.441 0.807 1 0 ? C3B PHO 177 J 1 HETATM 14 C C4B PHO . . . TB 12 25.943 -9.084 0.434 1 0 ? C4B PHO 177 J 1 HETATM 15 N NC PHO . . . TB 12 27.015 -6.311 -0.243 1 0 ? NC PHO 177 J 1 HETATM 16 C C1C PHO . . . TB 12 26.209 -6.6 0.801 1 0 ? C1C PHO 177 J 1 HETATM 17 C C2C PHO . . . TB 12 25.962 -5.377 1.556 1 0 ? C2C PHO 177 J 1 HETATM 18 C C3C PHO . . . TB 12 26.632 -4.363 0.94 1 0 ? C3C PHO 177 J 1 HETATM 19 C C4C PHO . . . TB 12 27.287 -4.958 -0.217 1 0 ? C4C PHO 177 J 1 HETATM 20 N ND PHO . . . TB 12 28.748 -6.15 -2.456 1 0 ? ND PHO 177 J 1 HETATM 21 C C1D PHO . . . TB 12 28.817 -4.856 -2.16 1 0 ? C1D PHO 177 J 1 HETATM 22 C C2D PHO . . . TB 12 29.725 -4.17 -3.004 1 0 ? C2D PHO 177 J 1 HETATM 23 C C3D PHO . . . TB 12 30.207 -5.138 -3.866 1 0 ? C3D PHO 177 J 1 HETATM 24 C C4D PHO . . . TB 12 29.59 -6.337 -3.511 1 0 ? C4D PHO 177 J 1 HETATM 25 C CAD PHO . . . TB 12 31.075 -5.389 -4.96 1 0 ? CAD PHO 177 J 1 HETATM 26 C CBD PHO . . . TB 12 30.94 -6.9 -5.318 1 0 ? CBD PHO 177 J 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 1261 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #