data_1IM0 # _model_server_result.job_id BzV4qOrpNp14-h7Lot0Yvw _model_server_result.datetime_utc '2024-10-12 04:32:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1im0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":504}' # _entry.id 1IM0 # _exptl.entry_id 1IM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IM0 _cell.length_a 78.462 _cell.length_b 78.462 _cell.length_c 101.424 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1IM0 _atom_sites.fract_transf_matrix[1][1] 0.012745 _atom_sites.fract_transf_matrix[1][2] 0.007358 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 500 500 BOG BOG . C 2 BOG A 1 502 502 BOG OGT . D 2 BOG A 1 504 504 BOG OGF . E 2 BOG A 1 505 505 BOG OGF . F 3 MPD A 1 600 600 MPD MPD . G 3 MPD A 1 601 601 MPD MPD . H 3 MPD A 1 602 602 MPD MPD . I 4 HOH A 1 300 300 HOH TIP . I 4 HOH A 2 301 301 HOH TIP . I 4 HOH A 3 303 303 HOH TIP . I 4 HOH A 4 304 304 HOH TIP . I 4 HOH A 5 305 305 HOH TIP . I 4 HOH A 6 306 306 HOH TIP . I 4 HOH A 7 307 307 HOH TIP . I 4 HOH A 8 308 308 HOH TIP . I 4 HOH A 9 309 309 HOH TIP . I 4 HOH A 10 310 310 HOH TIP . I 4 HOH A 11 311 311 HOH TIP . I 4 HOH A 12 312 312 HOH TIP . I 4 HOH A 13 313 313 HOH TIP . I 4 HOH A 14 314 314 HOH TIP . I 4 HOH A 15 315 315 HOH TIP . I 4 HOH A 16 317 317 HOH TIP . I 4 HOH A 17 318 318 HOH TIP . I 4 HOH A 18 319 319 HOH TIP . I 4 HOH A 19 320 320 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 2 44.413 7.848 56.872 0.93 72.07 ? C1 BOG 504 A 1 HETATM 2 O O1 BOG . . . D 2 45.031 9.055 57.165 0.93 70.61 ? O1 BOG 504 A 1 HETATM 3 C C2 BOG . . . D 2 45.447 6.862 56.312 0.93 72.94 ? C2 BOG 504 A 1 HETATM 4 O O2 BOG . . . D 2 45.907 7.32 55.047 0.93 72.97 ? O2 BOG 504 A 1 HETATM 5 C C3 BOG . . . D 2 44.84 5.456 56.161 0.93 73.78 ? C3 BOG 504 A 1 HETATM 6 O O3 BOG . . . D 2 45.865 4.53 55.83 0.93 74.02 ? O3 BOG 504 A 1 HETATM 7 C C4 BOG . . . D 2 44.148 5.014 57.459 0.93 73.6 ? C4 BOG 504 A 1 HETATM 8 O O4 BOG . . . D 2 43.471 3.783 57.252 0.93 73.88 ? O4 BOG 504 A 1 HETATM 9 C C5 BOG . . . D 2 43.149 6.087 57.885 0.93 73.43 ? C5 BOG 504 A 1 HETATM 10 O O5 BOG . . . D 2 43.841 7.336 58.085 0.93 72.73 ? O5 BOG 504 A 1 HETATM 11 C C6 BOG . . . D 2 42.409 5.756 59.172 0.93 73.67 ? C6 BOG 504 A 1 HETATM 12 O O6 BOG . . . D 2 43.303 5.344 60.195 0.93 74.01 ? O6 BOG 504 A 1 HETATM 13 C C1' BOG . . . D 2 44.136 10.165 57.152 0.93 70.02 ? C1' BOG 504 A 1 HETATM 14 C C2' BOG . . . D 2 44.813 11.315 57.837 0.93 69.69 ? C2' BOG 504 A 1 HETATM 15 C C3' BOG . . . D 2 43.936 12.544 57.758 0.93 69.75 ? C3' BOG 504 A 1 HETATM 16 C C4' BOG . . . D 2 44.783 13.79 57.626 0.93 69.81 ? C4' BOG 504 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #