data_1IM0 # _model_server_result.job_id edrrPugguKNb5N9nJQnjHw _model_server_result.datetime_utc '2024-10-12 04:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1im0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 1IM0 # _exptl.entry_id 1IM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IM0 _cell.length_a 78.462 _cell.length_b 78.462 _cell.length_c 101.424 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 272 n n C1 H11 MPD sing 273 n n C1 H12 MPD sing 274 n n C1 H13 MPD sing 275 n n C2 O2 MPD sing 276 n n C2 CM MPD sing 277 n n C2 C3 MPD sing 278 n n O2 HO2 MPD sing 279 n n CM HM1 MPD sing 280 n n CM HM2 MPD sing 281 n n CM HM3 MPD sing 282 n n C3 C4 MPD sing 283 n n C3 H31 MPD sing 284 n n C3 H32 MPD sing 285 n n C4 O4 MPD sing 286 n n C4 C5 MPD sing 287 n n C4 H4 MPD sing 288 n n O4 HO4 MPD sing 289 n n C5 H51 MPD sing 290 n n C5 H52 MPD sing 291 n n C5 H53 MPD sing 292 n n # _atom_sites.entry_id 1IM0 _atom_sites.fract_transf_matrix[1][1] 0.012745 _atom_sites.fract_transf_matrix[1][2] 0.007358 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 500 500 BOG BOG . C 2 BOG A 1 502 502 BOG OGT . D 2 BOG A 1 504 504 BOG OGF . E 2 BOG A 1 505 505 BOG OGF . F 3 MPD A 1 600 600 MPD MPD . G 3 MPD A 1 601 601 MPD MPD . H 3 MPD A 1 602 602 MPD MPD . I 4 HOH A 1 300 300 HOH TIP . I 4 HOH A 2 301 301 HOH TIP . I 4 HOH A 3 303 303 HOH TIP . I 4 HOH A 4 304 304 HOH TIP . I 4 HOH A 5 305 305 HOH TIP . I 4 HOH A 6 306 306 HOH TIP . I 4 HOH A 7 307 307 HOH TIP . I 4 HOH A 8 308 308 HOH TIP . I 4 HOH A 9 309 309 HOH TIP . I 4 HOH A 10 310 310 HOH TIP . I 4 HOH A 11 311 311 HOH TIP . I 4 HOH A 12 312 312 HOH TIP . I 4 HOH A 13 313 313 HOH TIP . I 4 HOH A 14 314 314 HOH TIP . I 4 HOH A 15 315 315 HOH TIP . I 4 HOH A 16 317 317 HOH TIP . I 4 HOH A 17 318 318 HOH TIP . I 4 HOH A 18 319 319 HOH TIP . I 4 HOH A 19 320 320 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 3 26.975 34.309 32.267 1 80.77 ? C1 MPD 600 A 1 HETATM 2 C C2 MPD . . . F 3 27.705 34.474 30.957 1 80.87 ? C2 MPD 600 A 1 HETATM 3 O O2 MPD . . . F 3 27.805 35.888 30.736 1 80.94 ? O2 MPD 600 A 1 HETATM 4 C CM MPD . . . F 3 29.066 33.885 31.02 1 80.45 ? CM MPD 600 A 1 HETATM 5 C C3 MPD . . . F 3 26.959 33.848 29.748 1 81.2 ? C3 MPD 600 A 1 HETATM 6 C C4 MPD . . . F 3 25.543 34.357 29.435 1 81.87 ? C4 MPD 600 A 1 HETATM 7 O O4 MPD . . . F 3 25.545 35.729 29.128 1 82.54 ? O4 MPD 600 A 1 HETATM 8 C C5 MPD . . . F 3 24.951 33.642 28.236 1 82.1 ? C5 MPD 600 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #