data_1IMA # _model_server_result.job_id 6avhWc6MHgMrrOHTksbF6w _model_server_result.datetime_utc '2024-12-26 16:28:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ima # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":279}' # _entry.id 1IMA # _exptl.entry_id 1IMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IMA _cell.length_a 86.9 _cell.length_b 86.9 _cell.length_c 154.5 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 125 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 125 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc1 A OE1 GLU 70 A GLU 70 1_555 C GD GD . A GD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 A OD1 ASP 90 A ASP 90 1_555 C GD GD . A GD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 A OD2 ASP 90 A ASP 90 1_555 C GD GD . A GD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.236 ? metalc ? metalc4 A O ILE 92 A ILE 92 1_555 C GD GD . A GD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 C GD GD . A GD 278 1_555 D O7 IPD . A IPD 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc6 C GD GD . A GD 278 1_555 G O HOH . A HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc7 C GD GD . A GD 278 1_555 G O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc8 B OE1 GLU 70 B GLU 70 1_555 E GD GD . B GD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc9 B OD1 ASP 90 B ASP 90 1_555 E GD GD . B GD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 B OD2 ASP 90 B ASP 90 1_555 E GD GD . B GD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.235 ? metalc ? metalc11 B O ILE 92 B ILE 92 1_555 E GD GD . B GD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc12 E GD GD . B GD 278 1_555 F O7 IPD . B IPD 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc13 E GD GD . B GD 278 1_555 H O HOH . B HOH 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc14 E GD GD . B GD 278 1_555 H O HOH . B HOH 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? # _chem_comp.formula 'C6 H11 O9 P -2' _chem_comp.formula_weight 258.12 _chem_comp.id IPD _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPD sing 173 n n C1 C6 IPD sing 174 n n C1 O1 IPD sing 175 n n C1 H1 IPD sing 176 n n C2 C3 IPD sing 177 n n C2 O2 IPD sing 178 n n C2 H2 IPD sing 179 n n C3 C4 IPD sing 180 n n C3 O3 IPD sing 181 n n C3 H3 IPD sing 182 n n C4 C5 IPD sing 183 n n C4 O4 IPD sing 184 n n C4 H4 IPD sing 185 n n C5 C6 IPD sing 186 n n C5 O5 IPD sing 187 n n C5 H5 IPD sing 188 n n C6 O6 IPD sing 189 n n C6 H6 IPD sing 190 n n P1 O1 IPD sing 191 n n P1 O7 IPD doub 192 n n P1 O8 IPD sing 193 n n P1 O9 IPD sing 194 n n O2 HO2 IPD sing 195 n n O3 HO3 IPD sing 196 n n O4 HO4 IPD sing 197 n n O5 HO5 IPD sing 198 n n O6 HO6 IPD sing 199 n n # _atom_sites.entry_id 1IMA _atom_sites.fract_transf_matrix[1][1] 0.011507 _atom_sites.fract_transf_matrix[1][2] 0.006644 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GD A 1 278 1 GD GD . D 3 IPD A 1 279 3 IPD IPD . E 2 GD B 1 278 2 GD GD . F 3 IPD B 1 279 4 IPD IPD . G 4 HOH A 1 280 5 HOH HOH . G 4 HOH A 2 281 6 HOH HOH . G 4 HOH A 3 282 7 HOH HOH . G 4 HOH A 4 283 8 HOH HOH . G 4 HOH A 5 284 9 HOH HOH . G 4 HOH A 6 285 10 HOH HOH . G 4 HOH A 7 286 11 HOH HOH . G 4 HOH A 8 287 12 HOH HOH . G 4 HOH A 9 288 13 HOH HOH . G 4 HOH A 10 289 14 HOH HOH . G 4 HOH A 11 290 15 HOH HOH . G 4 HOH A 12 291 16 HOH HOH . G 4 HOH A 13 292 18 HOH HOH . G 4 HOH A 14 293 19 HOH HOH . G 4 HOH A 15 294 20 HOH HOH . G 4 HOH A 16 295 21 HOH HOH . G 4 HOH A 17 296 22 HOH HOH . G 4 HOH A 18 297 23 HOH HOH . G 4 HOH A 19 298 24 HOH HOH . G 4 HOH A 20 299 25 HOH HOH . G 4 HOH A 21 300 26 HOH HOH . G 4 HOH A 22 301 27 HOH HOH . G 4 HOH A 23 302 29 HOH HOH . G 4 HOH A 24 303 30 HOH HOH . G 4 HOH A 25 304 31 HOH HOH . G 4 HOH A 26 305 32 HOH HOH . G 4 HOH A 27 306 33 HOH HOH . G 4 HOH A 28 307 34 HOH HOH . G 4 HOH A 29 308 35 HOH HOH . G 4 HOH A 30 309 37 HOH HOH . G 4 HOH A 31 310 41 HOH HOH . G 4 HOH A 32 311 42 HOH HOH . G 4 HOH A 33 312 43 HOH HOH . G 4 HOH A 34 313 44 HOH HOH . G 4 HOH A 35 314 46 HOH HOH . G 4 HOH A 36 315 47 HOH HOH . G 4 HOH A 37 316 48 HOH HOH . G 4 HOH A 38 317 49 HOH HOH . G 4 HOH A 39 318 50 HOH HOH . G 4 HOH A 40 319 51 HOH HOH . G 4 HOH A 41 320 63 HOH HOH . G 4 HOH A 42 321 81 HOH HOH . G 4 HOH A 43 322 91 HOH HOH . G 4 HOH A 44 323 92 HOH HOH . G 4 HOH A 45 324 93 HOH HOH . G 4 HOH A 46 325 94 HOH HOH . G 4 HOH A 47 326 95 HOH HOH . G 4 HOH A 48 327 97 HOH HOH . G 4 HOH A 49 328 98 HOH HOH . G 4 HOH A 50 329 99 HOH HOH . G 4 HOH A 51 330 100 HOH HOH . G 4 HOH A 52 331 101 HOH HOH . G 4 HOH A 53 332 102 HOH HOH . G 4 HOH A 54 333 103 HOH HOH . G 4 HOH A 55 334 104 HOH HOH . G 4 HOH A 56 335 105 HOH HOH . G 4 HOH A 57 336 106 HOH HOH . G 4 HOH A 58 337 107 HOH HOH . G 4 HOH A 59 338 108 HOH HOH . G 4 HOH A 60 339 109 HOH HOH . G 4 HOH A 61 340 114 HOH HOH . G 4 HOH A 62 341 122 HOH HOH . G 4 HOH A 63 342 130 HOH HOH . G 4 HOH A 64 343 139 HOH HOH . G 4 HOH A 65 344 140 HOH HOH . G 4 HOH A 66 345 141 HOH HOH . G 4 HOH A 67 346 142 HOH HOH . G 4 HOH A 68 347 143 HOH HOH . G 4 HOH A 69 348 144 HOH HOH . G 4 HOH A 70 349 145 HOH HOH . G 4 HOH A 71 350 146 HOH HOH . G 4 HOH A 72 351 147 HOH HOH . G 4 HOH A 73 352 148 HOH HOH . G 4 HOH A 74 353 149 HOH HOH . G 4 HOH A 75 354 151 HOH HOH . G 4 HOH A 76 355 152 HOH HOH . G 4 HOH A 77 356 156 HOH HOH . G 4 HOH A 78 357 157 HOH HOH . G 4 HOH A 79 358 158 HOH HOH . G 4 HOH A 80 359 159 HOH HOH . G 4 HOH A 81 360 160 HOH HOH . G 4 HOH A 82 361 161 HOH HOH . G 4 HOH A 83 362 167 HOH HOH . G 4 HOH A 84 363 170 HOH HOH . G 4 HOH A 85 364 171 HOH HOH . G 4 HOH A 86 365 172 HOH HOH . G 4 HOH A 87 366 173 HOH HOH . G 4 HOH A 88 367 174 HOH HOH . G 4 HOH A 89 368 179 HOH HOH . G 4 HOH A 90 369 181 HOH HOH . G 4 HOH A 91 370 182 HOH HOH . G 4 HOH A 92 371 183 HOH HOH . G 4 HOH A 93 372 184 HOH HOH . G 4 HOH A 94 373 185 HOH HOH . G 4 HOH A 95 374 186 HOH HOH . G 4 HOH A 96 375 190 HOH HOH . G 4 HOH A 97 376 191 HOH HOH . G 4 HOH A 98 377 192 HOH HOH . H 4 HOH B 1 280 17 HOH HOH . H 4 HOH B 2 281 28 HOH HOH . H 4 HOH B 3 282 36 HOH HOH . H 4 HOH B 4 283 38 HOH HOH . H 4 HOH B 5 284 39 HOH HOH . H 4 HOH B 6 285 40 HOH HOH . H 4 HOH B 7 286 45 HOH HOH . H 4 HOH B 8 287 52 HOH HOH . H 4 HOH B 9 288 53 HOH HOH . H 4 HOH B 10 289 54 HOH HOH . H 4 HOH B 11 290 55 HOH HOH . H 4 HOH B 12 291 56 HOH HOH . H 4 HOH B 13 292 57 HOH HOH . H 4 HOH B 14 293 58 HOH HOH . H 4 HOH B 15 294 59 HOH HOH . H 4 HOH B 16 295 60 HOH HOH . H 4 HOH B 17 296 61 HOH HOH . H 4 HOH B 18 297 62 HOH HOH . H 4 HOH B 19 298 64 HOH HOH . H 4 HOH B 20 299 65 HOH HOH . H 4 HOH B 21 300 66 HOH HOH . H 4 HOH B 22 301 67 HOH HOH . H 4 HOH B 23 302 68 HOH HOH . H 4 HOH B 24 303 69 HOH HOH . H 4 HOH B 25 304 70 HOH HOH . H 4 HOH B 26 305 71 HOH HOH . H 4 HOH B 27 306 72 HOH HOH . H 4 HOH B 28 307 73 HOH HOH . H 4 HOH B 29 308 74 HOH HOH . H 4 HOH B 30 309 75 HOH HOH . H 4 HOH B 31 310 76 HOH HOH . H 4 HOH B 32 311 77 HOH HOH . H 4 HOH B 33 312 78 HOH HOH . H 4 HOH B 34 313 79 HOH HOH . H 4 HOH B 35 314 80 HOH HOH . H 4 HOH B 36 315 82 HOH HOH . H 4 HOH B 37 316 83 HOH HOH . H 4 HOH B 38 317 84 HOH HOH . H 4 HOH B 39 318 85 HOH HOH . H 4 HOH B 40 319 86 HOH HOH . H 4 HOH B 41 320 87 HOH HOH . H 4 HOH B 42 321 88 HOH HOH . H 4 HOH B 43 322 89 HOH HOH . H 4 HOH B 44 323 90 HOH HOH . H 4 HOH B 45 324 96 HOH HOH . H 4 HOH B 46 325 110 HOH HOH . H 4 HOH B 47 326 111 HOH HOH . H 4 HOH B 48 327 112 HOH HOH . H 4 HOH B 49 328 113 HOH HOH . H 4 HOH B 50 329 115 HOH HOH . H 4 HOH B 51 330 116 HOH HOH . H 4 HOH B 52 331 117 HOH HOH . H 4 HOH B 53 332 118 HOH HOH . H 4 HOH B 54 333 119 HOH HOH . H 4 HOH B 55 334 120 HOH HOH . H 4 HOH B 56 335 121 HOH HOH . H 4 HOH B 57 336 123 HOH HOH . H 4 HOH B 58 337 124 HOH HOH . H 4 HOH B 59 338 125 HOH HOH . H 4 HOH B 60 339 126 HOH HOH . H 4 HOH B 61 340 127 HOH HOH . H 4 HOH B 62 341 128 HOH HOH . H 4 HOH B 63 342 129 HOH HOH . H 4 HOH B 64 343 131 HOH HOH . H 4 HOH B 65 344 132 HOH HOH . H 4 HOH B 66 345 133 HOH HOH . H 4 HOH B 67 346 134 HOH HOH . H 4 HOH B 68 347 135 HOH HOH . H 4 HOH B 69 348 136 HOH HOH . H 4 HOH B 70 349 137 HOH HOH . H 4 HOH B 71 350 138 HOH HOH . H 4 HOH B 72 351 150 HOH HOH . H 4 HOH B 73 352 153 HOH HOH . H 4 HOH B 74 353 154 HOH HOH . H 4 HOH B 75 354 155 HOH HOH . H 4 HOH B 76 355 162 HOH HOH . H 4 HOH B 77 356 163 HOH HOH . H 4 HOH B 78 357 164 HOH HOH . H 4 HOH B 79 358 165 HOH HOH . H 4 HOH B 80 359 166 HOH HOH . H 4 HOH B 81 360 168 HOH HOH . H 4 HOH B 82 361 169 HOH HOH . H 4 HOH B 83 362 175 HOH HOH . H 4 HOH B 84 363 176 HOH HOH . H 4 HOH B 85 364 177 HOH HOH . H 4 HOH B 86 365 178 HOH HOH . H 4 HOH B 87 366 180 HOH HOH . H 4 HOH B 88 367 187 HOH HOH . H 4 HOH B 89 368 188 HOH HOH . H 4 HOH B 90 369 189 HOH HOH . H 4 HOH B 91 370 193 HOH HOH . H 4 HOH B 92 371 194 HOH HOH . H 4 HOH B 93 372 195 HOH HOH . H 4 HOH B 94 373 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPD . . . F 3 -10.593 50.778 34.756 1 8.97 ? C1 IPD 279 B 1 HETATM 2 C C2 IPD . . . F 3 -9.986 51.42 33.535 1 13.38 ? C2 IPD 279 B 1 HETATM 3 C C3 IPD . . . F 3 -9.232 50.351 32.733 1 10.62 ? C3 IPD 279 B 1 HETATM 4 C C4 IPD . . . F 3 -10.173 49.252 32.264 1 6.52 ? C4 IPD 279 B 1 HETATM 5 C C5 IPD . . . F 3 -10.886 48.623 33.452 1 9.86 ? C5 IPD 279 B 1 HETATM 6 C C6 IPD . . . F 3 -11.591 49.686 34.288 1 11.64 ? C6 IPD 279 B 1 HETATM 7 P P1 IPD . . . F 3 -10.687 52.259 36.89 1 7.17 ? P1 IPD 279 B 1 HETATM 8 O O1 IPD . . . F 3 -11.287 51.803 35.529 1 15.69 ? O1 IPD 279 B 1 HETATM 9 O O2 IPD . . . F 3 -11.019 51.989 32.732 1 11.93 ? O2 IPD 279 B 1 HETATM 10 O O3 IPD . . . F 3 -8.602 50.96 31.608 1 15.43 ? O3 IPD 279 B 1 HETATM 11 O O4 IPD . . . F 3 -9.423 48.236 31.603 1 13.57 ? O4 IPD 279 B 1 HETATM 12 O O5 IPD . . . F 3 -11.847 47.678 32.981 1 10.73 ? O5 IPD 279 B 1 HETATM 13 O O6 IPD . . . F 3 -12.227 49.06 35.399 1 18.51 ? O6 IPD 279 B 1 HETATM 14 O O7 IPD . . . F 3 -11.559 53.234 37.561 1 15.02 ? O7 IPD 279 B 1 HETATM 15 O O8 IPD . . . F 3 -10.48 51.029 37.726 1 13.98 ? O8 IPD 279 B 1 HETATM 16 O O9 IPD . . . F 3 -9.308 52.84 36.618 1 9.88 ? O9 IPD 279 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #