data_1IMB # _model_server_result.job_id '_gDnmguBRbFrU5PLiUE78w' _model_server_result.datetime_utc '2024-10-20 19:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1imb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":279}' # _entry.id 1IMB # _exptl.entry_id 1IMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-MYO-INOSITOL-1-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IMB _cell.length_a 86.9 _cell.length_b 86.9 _cell.length_c 154.5 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 125 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 125 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc1 C GD GD . A GD 278 1_555 G O HOH . A HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc2 C GD GD . A GD 278 1_555 G O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc3 C GD GD . A GD 278 1_555 A O ILE 92 A ILE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 C GD GD . A GD 278 1_555 A OE1 GLU 70 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 C GD GD . A GD 278 1_555 A OD1 ASP 90 A ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 C GD GD . A GD 278 1_555 A OD2 ASP 90 A ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc7 C GD GD . A GD 278 1_555 D O8 LIP . A LIP 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc8 E GD GD . B GD 278 1_555 B OD1 ASP 90 B ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 E GD GD . B GD 278 1_555 B OD2 ASP 90 B ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc10 E GD GD . B GD 278 1_555 F O8 LIP . B LIP 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc11 E GD GD . B GD 278 1_555 H O HOH . B HOH 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc12 E GD GD . B GD 278 1_555 B O ILE 92 B ILE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc13 E GD GD . B GD 278 1_555 H O HOH . B HOH 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc14 E GD GD . B GD 278 1_555 B OE1 GLU 70 B GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C6 H11 O9 P -2' _chem_comp.formula_weight 258.12 _chem_comp.id LIP _chem_comp.mon_nstd_flag . _chem_comp.name L-MYO-INOSITOL-1-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1IMB _atom_sites.fract_transf_matrix[1][1] 0.011507 _atom_sites.fract_transf_matrix[1][2] 0.006644 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GD A 1 278 1 GD GD . D 3 LIP A 1 279 3 LIP LIP . E 2 GD B 1 278 2 GD GD . F 3 LIP B 1 279 4 LIP LIP . G 4 HOH A 1 280 5 HOH HOH . G 4 HOH A 2 281 6 HOH HOH . G 4 HOH A 3 282 7 HOH HOH . G 4 HOH A 4 283 8 HOH HOH . G 4 HOH A 5 284 10 HOH HOH . G 4 HOH A 6 285 11 HOH HOH . G 4 HOH A 7 286 12 HOH HOH . G 4 HOH A 8 287 13 HOH HOH . G 4 HOH A 9 288 14 HOH HOH . G 4 HOH A 10 289 15 HOH HOH . G 4 HOH A 11 290 16 HOH HOH . G 4 HOH A 12 291 17 HOH HOH . G 4 HOH A 13 292 20 HOH HOH . G 4 HOH A 14 293 21 HOH HOH . G 4 HOH A 15 294 22 HOH HOH . G 4 HOH A 16 295 23 HOH HOH . G 4 HOH A 17 296 24 HOH HOH . G 4 HOH A 18 297 25 HOH HOH . G 4 HOH A 19 298 26 HOH HOH . G 4 HOH A 20 299 27 HOH HOH . G 4 HOH A 21 300 28 HOH HOH . G 4 HOH A 22 301 29 HOH HOH . G 4 HOH A 23 302 31 HOH HOH . G 4 HOH A 24 303 32 HOH HOH . G 4 HOH A 25 304 33 HOH HOH . G 4 HOH A 26 305 34 HOH HOH . G 4 HOH A 27 306 35 HOH HOH . G 4 HOH A 28 307 36 HOH HOH . G 4 HOH A 29 308 37 HOH HOH . G 4 HOH A 30 309 39 HOH HOH . G 4 HOH A 31 310 41 HOH HOH . G 4 HOH A 32 311 43 HOH HOH . G 4 HOH A 33 312 45 HOH HOH . G 4 HOH A 34 313 46 HOH HOH . G 4 HOH A 35 314 48 HOH HOH . G 4 HOH A 36 315 49 HOH HOH . G 4 HOH A 37 316 50 HOH HOH . G 4 HOH A 38 317 51 HOH HOH . G 4 HOH A 39 318 52 HOH HOH . G 4 HOH A 40 319 53 HOH HOH . G 4 HOH A 41 320 66 HOH HOH . G 4 HOH A 42 321 99 HOH HOH . G 4 HOH A 43 322 100 HOH HOH . G 4 HOH A 44 323 101 HOH HOH . G 4 HOH A 45 324 102 HOH HOH . G 4 HOH A 46 325 103 HOH HOH . G 4 HOH A 47 326 104 HOH HOH . G 4 HOH A 48 327 106 HOH HOH . G 4 HOH A 49 328 107 HOH HOH . G 4 HOH A 50 329 109 HOH HOH . G 4 HOH A 51 330 111 HOH HOH . G 4 HOH A 52 331 112 HOH HOH . G 4 HOH A 53 332 113 HOH HOH . G 4 HOH A 54 333 115 HOH HOH . G 4 HOH A 55 334 117 HOH HOH . G 4 HOH A 56 335 118 HOH HOH . G 4 HOH A 57 336 119 HOH HOH . G 4 HOH A 58 337 120 HOH HOH . G 4 HOH A 59 338 121 HOH HOH . G 4 HOH A 60 339 122 HOH HOH . G 4 HOH A 61 340 123 HOH HOH . G 4 HOH A 62 341 128 HOH HOH . G 4 HOH A 63 342 136 HOH HOH . G 4 HOH A 64 343 144 HOH HOH . G 4 HOH A 65 344 153 HOH HOH . G 4 HOH A 66 345 154 HOH HOH . G 4 HOH A 67 346 155 HOH HOH . G 4 HOH A 68 347 156 HOH HOH . G 4 HOH A 69 348 157 HOH HOH . G 4 HOH A 70 349 158 HOH HOH . G 4 HOH A 71 350 159 HOH HOH . G 4 HOH A 72 351 160 HOH HOH . G 4 HOH A 73 352 161 HOH HOH . G 4 HOH A 74 353 162 HOH HOH . G 4 HOH A 75 354 163 HOH HOH . G 4 HOH A 76 355 164 HOH HOH . G 4 HOH A 77 356 165 HOH HOH . G 4 HOH A 78 357 166 HOH HOH . G 4 HOH A 79 358 168 HOH HOH . G 4 HOH A 80 359 169 HOH HOH . G 4 HOH A 81 360 174 HOH HOH . G 4 HOH A 82 361 175 HOH HOH . G 4 HOH A 83 362 176 HOH HOH . G 4 HOH A 84 363 177 HOH HOH . G 4 HOH A 85 364 178 HOH HOH . G 4 HOH A 86 365 179 HOH HOH . G 4 HOH A 87 366 180 HOH HOH . G 4 HOH A 88 367 181 HOH HOH . G 4 HOH A 89 368 188 HOH HOH . G 4 HOH A 90 369 190 HOH HOH . G 4 HOH A 91 370 191 HOH HOH . G 4 HOH A 92 371 194 HOH HOH . G 4 HOH A 93 372 195 HOH HOH . G 4 HOH A 94 373 196 HOH HOH . G 4 HOH A 95 374 197 HOH HOH . G 4 HOH A 96 375 198 HOH HOH . H 4 HOH B 1 280 9 HOH HOH . H 4 HOH B 2 281 18 HOH HOH . H 4 HOH B 3 282 19 HOH HOH . H 4 HOH B 4 283 30 HOH HOH . H 4 HOH B 5 284 38 HOH HOH . H 4 HOH B 6 285 40 HOH HOH . H 4 HOH B 7 286 42 HOH HOH . H 4 HOH B 8 287 44 HOH HOH . H 4 HOH B 9 288 47 HOH HOH . H 4 HOH B 10 289 54 HOH HOH . H 4 HOH B 11 290 55 HOH HOH . H 4 HOH B 12 291 56 HOH HOH . H 4 HOH B 13 292 57 HOH HOH . H 4 HOH B 14 293 58 HOH HOH . H 4 HOH B 15 294 59 HOH HOH . H 4 HOH B 16 295 60 HOH HOH . H 4 HOH B 17 296 61 HOH HOH . H 4 HOH B 18 297 62 HOH HOH . H 4 HOH B 19 298 63 HOH HOH . H 4 HOH B 20 299 64 HOH HOH . H 4 HOH B 21 300 65 HOH HOH . H 4 HOH B 22 301 67 HOH HOH . H 4 HOH B 23 302 68 HOH HOH . H 4 HOH B 24 303 69 HOH HOH . H 4 HOH B 25 304 70 HOH HOH . H 4 HOH B 26 305 71 HOH HOH . H 4 HOH B 27 306 72 HOH HOH . H 4 HOH B 28 307 73 HOH HOH . H 4 HOH B 29 308 74 HOH HOH . H 4 HOH B 30 309 75 HOH HOH . H 4 HOH B 31 310 76 HOH HOH . H 4 HOH B 32 311 77 HOH HOH . H 4 HOH B 33 312 78 HOH HOH . H 4 HOH B 34 313 79 HOH HOH . H 4 HOH B 35 314 80 HOH HOH . H 4 HOH B 36 315 81 HOH HOH . H 4 HOH B 37 316 82 HOH HOH . H 4 HOH B 38 317 83 HOH HOH . H 4 HOH B 39 318 84 HOH HOH . H 4 HOH B 40 319 85 HOH HOH . H 4 HOH B 41 320 86 HOH HOH . H 4 HOH B 42 321 87 HOH HOH . H 4 HOH B 43 322 88 HOH HOH . H 4 HOH B 44 323 89 HOH HOH . H 4 HOH B 45 324 90 HOH HOH . H 4 HOH B 46 325 91 HOH HOH . H 4 HOH B 47 326 92 HOH HOH . H 4 HOH B 48 327 93 HOH HOH . H 4 HOH B 49 328 94 HOH HOH . H 4 HOH B 50 329 95 HOH HOH . H 4 HOH B 51 330 96 HOH HOH . H 4 HOH B 52 331 97 HOH HOH . H 4 HOH B 53 332 98 HOH HOH . H 4 HOH B 54 333 105 HOH HOH . H 4 HOH B 55 334 108 HOH HOH . H 4 HOH B 56 335 110 HOH HOH . H 4 HOH B 57 336 114 HOH HOH . H 4 HOH B 58 337 116 HOH HOH . H 4 HOH B 59 338 124 HOH HOH . H 4 HOH B 60 339 125 HOH HOH . H 4 HOH B 61 340 126 HOH HOH . H 4 HOH B 62 341 127 HOH HOH . H 4 HOH B 63 342 129 HOH HOH . H 4 HOH B 64 343 130 HOH HOH . H 4 HOH B 65 344 131 HOH HOH . H 4 HOH B 66 345 132 HOH HOH . H 4 HOH B 67 346 133 HOH HOH . H 4 HOH B 68 347 134 HOH HOH . H 4 HOH B 69 348 135 HOH HOH . H 4 HOH B 70 349 137 HOH HOH . H 4 HOH B 71 350 138 HOH HOH . H 4 HOH B 72 351 139 HOH HOH . H 4 HOH B 73 352 140 HOH HOH . H 4 HOH B 74 353 141 HOH HOH . H 4 HOH B 75 354 142 HOH HOH . H 4 HOH B 76 355 143 HOH HOH . H 4 HOH B 77 356 145 HOH HOH . H 4 HOH B 78 357 146 HOH HOH . H 4 HOH B 79 358 147 HOH HOH . H 4 HOH B 80 359 148 HOH HOH . H 4 HOH B 81 360 149 HOH HOH . H 4 HOH B 82 361 150 HOH HOH . H 4 HOH B 83 362 151 HOH HOH . H 4 HOH B 84 363 152 HOH HOH . H 4 HOH B 85 364 167 HOH HOH . H 4 HOH B 86 365 170 HOH HOH . H 4 HOH B 87 366 171 HOH HOH . H 4 HOH B 88 367 172 HOH HOH . H 4 HOH B 89 368 173 HOH HOH . H 4 HOH B 90 369 182 HOH HOH . H 4 HOH B 91 370 183 HOH HOH . H 4 HOH B 92 371 184 HOH HOH . H 4 HOH B 93 372 185 HOH HOH . H 4 HOH B 94 373 186 HOH HOH . H 4 HOH B 95 374 187 HOH HOH . H 4 HOH B 96 375 189 HOH HOH . H 4 HOH B 97 376 192 HOH HOH . H 4 HOH B 98 377 193 HOH HOH . H 4 HOH B 99 378 199 HOH HOH . H 4 HOH B 100 379 200 HOH HOH . H 4 HOH B 101 380 201 HOH HOH . H 4 HOH B 102 381 202 HOH HOH . H 4 HOH B 103 382 203 HOH HOH . H 4 HOH B 104 383 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LIP . . . D 3 5.147 52.898 13.092 1 13.72 ? C1 LIP 279 A 1 HETATM 2 C C2 LIP . . . D 3 5.867 52.81 14.468 1 13.65 ? C2 LIP 279 A 1 HETATM 3 C C3 LIP . . . D 3 5.205 51.804 15.428 1 15.25 ? C3 LIP 279 A 1 HETATM 4 C C4 LIP . . . D 3 5.113 50.422 14.8 1 18.77 ? C4 LIP 279 A 1 HETATM 5 C C5 LIP . . . D 3 4.368 50.483 13.464 1 20.45 ? C5 LIP 279 A 1 HETATM 6 C C6 LIP . . . D 3 5.091 51.454 12.484 1 17.56 ? C6 LIP 279 A 1 HETATM 7 P P1 LIP . . . D 3 5.233 54.383 10.907 1 7.99 ? P1 LIP 279 A 1 HETATM 8 O O1 LIP . . . D 3 5.891 53.799 12.214 1 14.79 ? O1 LIP 279 A 1 HETATM 9 O O2 LIP . . . D 3 5.907 54.084 15.088 1 16.75 ? O2 LIP 279 A 1 HETATM 10 O O3 LIP . . . D 3 5.978 51.732 16.635 1 14.05 ? O3 LIP 279 A 1 HETATM 11 O O4 LIP . . . D 3 4.439 49.531 15.683 1 15.27 ? O4 LIP 279 A 1 HETATM 12 O O5 LIP . . . D 3 4.302 49.168 12.899 1 27.56 ? O5 LIP 279 A 1 HETATM 13 O O6 LIP . . . D 3 6.427 50.985 12.242 1 23.03 ? O6 LIP 279 A 1 HETATM 14 O O7 LIP . . . D 3 3.941 54.983 11.161 1 15.16 ? O7 LIP 279 A 1 HETATM 15 O O8 LIP . . . D 3 6.243 55.378 10.34 1 13.87 ? O8 LIP 279 A 1 HETATM 16 O O9 LIP . . . D 3 5.165 53.271 9.854 1 15.11 ? O9 LIP 279 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #