data_1IMD # _model_server_result.job_id Zkf4KQZ4HF1EIZRNA5dv5Q _model_server_result.datetime_utc '2024-10-20 19:46:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1imd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":278}' # _entry.id 1IMD # _exptl.entry_id 1IMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IMD _cell.length_a 85.85 _cell.length_b 85.85 _cell.length_c 153.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 125 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 125 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 C MN MN . A MN 278 1_555 E O3 PO4 . A PO4 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc2 C MN MN . A MN 278 1_555 I O HOH . A HOH 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc3 C MN MN . A MN 278 1_555 A O ILE 92 A ILE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc4 C MN MN . A MN 278 1_555 A OE1 GLU 70 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 C MN MN . A MN 278 1_555 A OD1 ASP 90 A ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc6 C MN MN . A MN 278 1_555 E O2 PO4 . A PO4 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc7 D MN MN . A MN 279 1_555 A OD2 ASP 90 A ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc8 D MN MN . A MN 279 1_555 A OD1 ASP 93 A ASP 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc9 D MN MN . A MN 279 1_555 A OD1 ASP 220 A ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc10 D MN MN . A MN 279 1_555 E O2 PO4 . A PO4 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc11 F MN MN . B MN 278 1_555 B OE1 GLU 70 B GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc12 F MN MN . B MN 278 1_555 H O3 PO4 . B PO4 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc13 F MN MN . B MN 278 1_555 B O ILE 92 B ILE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc14 F MN MN . B MN 278 1_555 H O2 PO4 . B PO4 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc15 F MN MN . B MN 278 1_555 J O HOH . B HOH 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc16 F MN MN . B MN 278 1_555 B OD1 ASP 90 B ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc17 G MN MN . B MN 279 1_555 B OD2 ASP 90 B ASP 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc18 G MN MN . B MN 279 1_555 B OD1 ASP 93 B ASP 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc19 G MN MN . B MN 279 1_555 H O2 PO4 . B PO4 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc20 G MN MN . B MN 279 1_555 B OD1 ASP 220 B ASP 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1IMD _atom_sites.fract_transf_matrix[1][1] 0.011648 _atom_sites.fract_transf_matrix[1][2] 0.006725 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 278 1 MN MN . D 2 MN A 1 279 2 MN MN . E 3 PO4 A 1 280 5 PO4 PO4 . F 2 MN B 1 278 3 MN MN . G 2 MN B 1 279 4 MN MN . H 3 PO4 B 1 280 6 PO4 PO4 . I 4 HOH A 1 281 7 HOH HOH . I 4 HOH A 2 282 8 HOH HOH . I 4 HOH A 3 283 12 HOH HOH . I 4 HOH A 4 284 13 HOH HOH . I 4 HOH A 5 285 17 HOH HOH . I 4 HOH A 6 286 18 HOH HOH . I 4 HOH A 7 287 20 HOH HOH . I 4 HOH A 8 288 21 HOH HOH . I 4 HOH A 9 289 22 HOH HOH . I 4 HOH A 10 290 23 HOH HOH . I 4 HOH A 11 291 25 HOH HOH . I 4 HOH A 12 292 26 HOH HOH . I 4 HOH A 13 293 27 HOH HOH . I 4 HOH A 14 294 32 HOH HOH . I 4 HOH A 15 295 33 HOH HOH . I 4 HOH A 16 296 44 HOH HOH . I 4 HOH A 17 297 46 HOH HOH . I 4 HOH A 18 298 50 HOH HOH . I 4 HOH A 19 299 52 HOH HOH . I 4 HOH A 20 300 53 HOH HOH . I 4 HOH A 21 301 54 HOH HOH . J 4 HOH B 1 281 9 HOH HOH . J 4 HOH B 2 282 10 HOH HOH . J 4 HOH B 3 283 11 HOH HOH . J 4 HOH B 4 284 14 HOH HOH . J 4 HOH B 5 285 15 HOH HOH . J 4 HOH B 6 286 16 HOH HOH . J 4 HOH B 7 287 19 HOH HOH . J 4 HOH B 8 288 24 HOH HOH . J 4 HOH B 9 289 28 HOH HOH . J 4 HOH B 10 290 29 HOH HOH . J 4 HOH B 11 291 30 HOH HOH . J 4 HOH B 12 292 31 HOH HOH . J 4 HOH B 13 293 34 HOH HOH . J 4 HOH B 14 294 35 HOH HOH . J 4 HOH B 15 295 36 HOH HOH . J 4 HOH B 16 296 37 HOH HOH . J 4 HOH B 17 297 38 HOH HOH . J 4 HOH B 18 298 39 HOH HOH . J 4 HOH B 19 299 40 HOH HOH . J 4 HOH B 20 300 41 HOH HOH . J 4 HOH B 21 301 42 HOH HOH . J 4 HOH B 22 302 43 HOH HOH . J 4 HOH B 23 303 45 HOH HOH . J 4 HOH B 24 304 47 HOH HOH . J 4 HOH B 25 305 48 HOH HOH . J 4 HOH B 26 306 49 HOH HOH . J 4 HOH B 27 307 51 HOH HOH . J 4 HOH B 28 308 55 HOH HOH . J 4 HOH B 29 309 56 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.456 _atom_site.Cartn_y 54.249 _atom_site.Cartn_z 39.267 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 278 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #