data_1IME # _model_server_result.job_id gY752TVKGYINeO87TwCjJA _model_server_result.datetime_utc '2024-10-20 19:42:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ime # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":278}' # _entry.id 1IME # _exptl.entry_id 1IME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IME _cell.length_a 86 _cell.length_b 86 _cell.length_c 154.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IME _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 70 A GLU 70 1_555 C CA CA . A CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A OD2 ASP 90 A ASP 90 1_555 C CA CA . A CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc3 A OD1 ASP 90 A ASP 90 1_555 C CA CA . A CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc4 A O ILE 92 A ILE 92 1_555 C CA CA . A CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 C CA CA . A CA 278 1_555 E O HOH . A HOH 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc6 C CA CA . A CA 278 1_555 E O HOH . A HOH 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 B OE1 GLU 70 B GLU 70 1_555 D CA CA . B CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 B OD1 ASP 90 B ASP 90 1_555 D CA CA . B CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc9 B OD2 ASP 90 B ASP 90 1_555 D CA CA . B CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc10 B O ILE 92 B ILE 92 1_555 D CA CA . B CA 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc11 D CA CA . B CA 278 1_555 F O HOH . B HOH 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc12 D CA CA . B CA 278 1_555 F O HOH . B HOH 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1IME _atom_sites.fract_transf_matrix[1][1] 0.011628 _atom_sites.fract_transf_matrix[1][2] 0.006713 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 278 1 CA CA . D 2 CA B 1 278 2 CA CA . E 3 HOH A 1 279 3 HOH HOH . E 3 HOH A 2 280 4 HOH HOH . E 3 HOH A 3 281 5 HOH HOH . E 3 HOH A 4 282 6 HOH HOH . E 3 HOH A 5 283 7 HOH HOH . E 3 HOH A 6 284 8 HOH HOH . E 3 HOH A 7 285 9 HOH HOH . E 3 HOH A 8 286 10 HOH HOH . E 3 HOH A 9 287 11 HOH HOH . E 3 HOH A 10 288 12 HOH HOH . E 3 HOH A 11 289 13 HOH HOH . E 3 HOH A 12 290 14 HOH HOH . E 3 HOH A 13 291 15 HOH HOH . E 3 HOH A 14 292 16 HOH HOH . E 3 HOH A 15 293 17 HOH HOH . E 3 HOH A 16 294 18 HOH HOH . E 3 HOH A 17 295 20 HOH HOH . E 3 HOH A 18 296 22 HOH HOH . E 3 HOH A 19 297 23 HOH HOH . E 3 HOH A 20 298 24 HOH HOH . E 3 HOH A 21 299 25 HOH HOH . E 3 HOH A 22 300 26 HOH HOH . E 3 HOH A 23 301 27 HOH HOH . E 3 HOH A 24 302 28 HOH HOH . E 3 HOH A 25 303 29 HOH HOH . E 3 HOH A 26 304 30 HOH HOH . E 3 HOH A 27 305 31 HOH HOH . E 3 HOH A 28 306 32 HOH HOH . E 3 HOH A 29 307 33 HOH HOH . E 3 HOH A 30 308 34 HOH HOH . E 3 HOH A 31 309 35 HOH HOH . E 3 HOH A 32 310 37 HOH HOH . E 3 HOH A 33 311 39 HOH HOH . E 3 HOH A 34 312 41 HOH HOH . E 3 HOH A 35 313 43 HOH HOH . E 3 HOH A 36 314 44 HOH HOH . E 3 HOH A 37 315 46 HOH HOH . E 3 HOH A 38 316 47 HOH HOH . E 3 HOH A 39 317 48 HOH HOH . E 3 HOH A 40 318 49 HOH HOH . E 3 HOH A 41 319 50 HOH HOH . E 3 HOH A 42 320 51 HOH HOH . E 3 HOH A 43 321 65 HOH HOH . E 3 HOH A 44 322 89 HOH HOH . E 3 HOH A 45 323 91 HOH HOH . E 3 HOH A 46 324 92 HOH HOH . E 3 HOH A 47 325 93 HOH HOH . E 3 HOH A 48 326 94 HOH HOH . E 3 HOH A 49 327 97 HOH HOH . E 3 HOH A 50 328 98 HOH HOH . E 3 HOH A 51 329 100 HOH HOH . E 3 HOH A 52 330 101 HOH HOH . E 3 HOH A 53 331 102 HOH HOH . E 3 HOH A 54 332 103 HOH HOH . E 3 HOH A 55 333 104 HOH HOH . E 3 HOH A 56 334 105 HOH HOH . E 3 HOH A 57 335 107 HOH HOH . E 3 HOH A 58 336 111 HOH HOH . E 3 HOH A 59 337 127 HOH HOH . E 3 HOH A 60 338 128 HOH HOH . E 3 HOH A 61 339 129 HOH HOH . E 3 HOH A 62 340 130 HOH HOH . E 3 HOH A 63 341 131 HOH HOH . E 3 HOH A 64 342 132 HOH HOH . E 3 HOH A 65 343 133 HOH HOH . E 3 HOH A 66 344 134 HOH HOH . E 3 HOH A 67 345 135 HOH HOH . E 3 HOH A 68 346 136 HOH HOH . E 3 HOH A 69 347 141 HOH HOH . E 3 HOH A 70 348 142 HOH HOH . E 3 HOH A 71 349 143 HOH HOH . E 3 HOH A 72 350 144 HOH HOH . E 3 HOH A 73 351 146 HOH HOH . E 3 HOH A 74 352 147 HOH HOH . E 3 HOH A 75 353 148 HOH HOH . E 3 HOH A 76 354 155 HOH HOH . E 3 HOH A 77 355 156 HOH HOH . E 3 HOH A 78 356 157 HOH HOH . E 3 HOH A 79 357 159 HOH HOH . E 3 HOH A 80 358 160 HOH HOH . E 3 HOH A 81 359 161 HOH HOH . E 3 HOH A 82 360 162 HOH HOH . E 3 HOH A 83 361 163 HOH HOH . E 3 HOH A 84 362 164 HOH HOH . E 3 HOH A 85 363 165 HOH HOH . E 3 HOH A 86 364 175 HOH HOH . E 3 HOH A 87 365 176 HOH HOH . E 3 HOH A 88 366 179 HOH HOH . E 3 HOH A 89 367 180 HOH HOH . E 3 HOH A 90 368 181 HOH HOH . E 3 HOH A 91 369 182 HOH HOH . E 3 HOH A 92 370 183 HOH HOH . F 3 HOH B 1 279 19 HOH HOH . F 3 HOH B 2 280 21 HOH HOH . F 3 HOH B 3 281 36 HOH HOH . F 3 HOH B 4 282 38 HOH HOH . F 3 HOH B 5 283 40 HOH HOH . F 3 HOH B 6 284 42 HOH HOH . F 3 HOH B 7 285 45 HOH HOH . F 3 HOH B 8 286 52 HOH HOH . F 3 HOH B 9 287 53 HOH HOH . F 3 HOH B 10 288 54 HOH HOH . F 3 HOH B 11 289 55 HOH HOH . F 3 HOH B 12 290 56 HOH HOH . F 3 HOH B 13 291 57 HOH HOH . F 3 HOH B 14 292 58 HOH HOH . F 3 HOH B 15 293 59 HOH HOH . F 3 HOH B 16 294 60 HOH HOH . F 3 HOH B 17 295 61 HOH HOH . F 3 HOH B 18 296 62 HOH HOH . F 3 HOH B 19 297 63 HOH HOH . F 3 HOH B 20 298 64 HOH HOH . F 3 HOH B 21 299 66 HOH HOH . F 3 HOH B 22 300 67 HOH HOH . F 3 HOH B 23 301 68 HOH HOH . F 3 HOH B 24 302 69 HOH HOH . F 3 HOH B 25 303 70 HOH HOH . F 3 HOH B 26 304 71 HOH HOH . F 3 HOH B 27 305 72 HOH HOH . F 3 HOH B 28 306 73 HOH HOH . F 3 HOH B 29 307 74 HOH HOH . F 3 HOH B 30 308 75 HOH HOH . F 3 HOH B 31 309 76 HOH HOH . F 3 HOH B 32 310 77 HOH HOH . F 3 HOH B 33 311 78 HOH HOH . F 3 HOH B 34 312 79 HOH HOH . F 3 HOH B 35 313 80 HOH HOH . F 3 HOH B 36 314 81 HOH HOH . F 3 HOH B 37 315 82 HOH HOH . F 3 HOH B 38 316 83 HOH HOH . F 3 HOH B 39 317 84 HOH HOH . F 3 HOH B 40 318 85 HOH HOH . F 3 HOH B 41 319 86 HOH HOH . F 3 HOH B 42 320 87 HOH HOH . F 3 HOH B 43 321 88 HOH HOH . F 3 HOH B 44 322 90 HOH HOH . F 3 HOH B 45 323 95 HOH HOH . F 3 HOH B 46 324 96 HOH HOH . F 3 HOH B 47 325 99 HOH HOH . F 3 HOH B 48 326 106 HOH HOH . F 3 HOH B 49 327 108 HOH HOH . F 3 HOH B 50 328 109 HOH HOH . F 3 HOH B 51 329 110 HOH HOH . F 3 HOH B 52 330 112 HOH HOH . F 3 HOH B 53 331 113 HOH HOH . F 3 HOH B 54 332 114 HOH HOH . F 3 HOH B 55 333 115 HOH HOH . F 3 HOH B 56 334 116 HOH HOH . F 3 HOH B 57 335 117 HOH HOH . F 3 HOH B 58 336 118 HOH HOH . F 3 HOH B 59 337 119 HOH HOH . F 3 HOH B 60 338 120 HOH HOH . F 3 HOH B 61 339 121 HOH HOH . F 3 HOH B 62 340 122 HOH HOH . F 3 HOH B 63 341 123 HOH HOH . F 3 HOH B 64 342 124 HOH HOH . F 3 HOH B 65 343 125 HOH HOH . F 3 HOH B 66 344 126 HOH HOH . F 3 HOH B 67 345 137 HOH HOH . F 3 HOH B 68 346 138 HOH HOH . F 3 HOH B 69 347 139 HOH HOH . F 3 HOH B 70 348 140 HOH HOH . F 3 HOH B 71 349 145 HOH HOH . F 3 HOH B 72 350 149 HOH HOH . F 3 HOH B 73 351 150 HOH HOH . F 3 HOH B 74 352 151 HOH HOH . F 3 HOH B 75 353 152 HOH HOH . F 3 HOH B 76 354 153 HOH HOH . F 3 HOH B 77 355 154 HOH HOH . F 3 HOH B 78 356 158 HOH HOH . F 3 HOH B 79 357 166 HOH HOH . F 3 HOH B 80 358 167 HOH HOH . F 3 HOH B 81 359 168 HOH HOH . F 3 HOH B 82 360 169 HOH HOH . F 3 HOH B 83 361 170 HOH HOH . F 3 HOH B 84 362 171 HOH HOH . F 3 HOH B 85 363 172 HOH HOH . F 3 HOH B 86 364 173 HOH HOH . F 3 HOH B 87 365 174 HOH HOH . F 3 HOH B 88 366 177 HOH HOH . F 3 HOH B 89 367 178 HOH HOH . F 3 HOH B 90 368 184 HOH HOH . F 3 HOH B 91 369 185 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.482 _atom_site.Cartn_y 54.051 _atom_site.Cartn_z 39.408 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 278 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #