data_1IN5 # _model_server_result.job_id 6QFzm_mcjuyQf3B5UZhpaQ _model_server_result.datetime_utc '2025-06-28 20:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1in5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 1IN5 # _exptl.entry_id 1IN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IN5 _cell.length_a 86.664 _cell.length_b 86.664 _cell.length_c 82.567 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1IN5 _atom_sites.fract_transf_matrix[1][1] 0.011539 _atom_sites.fract_transf_matrix[1][2] 0.006662 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 600 600 ADP ADP . C 3 HOH A 1 601 330 HOH HOH . C 3 HOH A 2 602 331 HOH HOH . C 3 HOH A 3 603 332 HOH HOH . C 3 HOH A 4 604 333 HOH HOH . C 3 HOH A 5 605 334 HOH HOH . C 3 HOH A 6 606 335 HOH HOH . C 3 HOH A 7 607 336 HOH HOH . C 3 HOH A 8 608 337 HOH HOH . C 3 HOH A 9 609 338 HOH HOH . C 3 HOH A 10 610 339 HOH HOH . C 3 HOH A 11 611 340 HOH HOH . C 3 HOH A 12 612 341 HOH HOH . C 3 HOH A 13 613 342 HOH HOH . C 3 HOH A 14 614 343 HOH HOH . C 3 HOH A 15 615 344 HOH HOH . C 3 HOH A 16 616 345 HOH HOH . C 3 HOH A 17 617 346 HOH HOH . C 3 HOH A 18 618 347 HOH HOH . C 3 HOH A 19 619 348 HOH HOH . C 3 HOH A 20 620 349 HOH HOH . C 3 HOH A 21 621 350 HOH HOH . C 3 HOH A 22 622 351 HOH HOH . C 3 HOH A 23 623 352 HOH HOH . C 3 HOH A 24 624 353 HOH HOH . C 3 HOH A 25 625 354 HOH HOH . C 3 HOH A 26 626 355 HOH HOH . C 3 HOH A 27 627 356 HOH HOH . C 3 HOH A 28 628 357 HOH HOH . C 3 HOH A 29 629 358 HOH HOH . C 3 HOH A 30 630 359 HOH HOH . C 3 HOH A 31 631 360 HOH HOH . C 3 HOH A 32 632 361 HOH HOH . C 3 HOH A 33 633 362 HOH HOH . C 3 HOH A 34 634 363 HOH HOH . C 3 HOH A 35 635 364 HOH HOH . C 3 HOH A 36 636 365 HOH HOH . C 3 HOH A 37 637 366 HOH HOH . C 3 HOH A 38 638 367 HOH HOH . C 3 HOH A 39 639 368 HOH HOH . C 3 HOH A 40 640 369 HOH HOH . C 3 HOH A 41 641 370 HOH HOH . C 3 HOH A 42 642 371 HOH HOH . C 3 HOH A 43 643 372 HOH HOH . C 3 HOH A 44 644 373 HOH HOH . C 3 HOH A 45 645 374 HOH HOH . C 3 HOH A 46 646 375 HOH HOH . C 3 HOH A 47 647 376 HOH HOH . C 3 HOH A 48 648 377 HOH HOH . C 3 HOH A 49 649 378 HOH HOH . C 3 HOH A 50 650 379 HOH HOH . C 3 HOH A 51 651 380 HOH HOH . C 3 HOH A 52 652 381 HOH HOH . C 3 HOH A 53 653 382 HOH HOH . C 3 HOH A 54 654 383 HOH HOH . C 3 HOH A 55 655 384 HOH HOH . C 3 HOH A 56 656 385 HOH HOH . C 3 HOH A 57 657 386 HOH HOH . C 3 HOH A 58 658 387 HOH HOH . C 3 HOH A 59 659 388 HOH HOH . C 3 HOH A 60 660 389 HOH HOH . C 3 HOH A 61 661 390 HOH HOH . C 3 HOH A 62 662 391 HOH HOH . C 3 HOH A 63 663 392 HOH HOH . C 3 HOH A 64 664 393 HOH HOH . C 3 HOH A 65 665 394 HOH HOH . C 3 HOH A 66 666 395 HOH HOH . C 3 HOH A 67 667 396 HOH HOH . C 3 HOH A 68 668 397 HOH HOH . C 3 HOH A 69 669 398 HOH HOH . C 3 HOH A 70 670 399 HOH HOH . C 3 HOH A 71 671 400 HOH HOH . C 3 HOH A 72 672 401 HOH HOH . C 3 HOH A 73 673 402 HOH HOH . C 3 HOH A 74 674 403 HOH HOH . C 3 HOH A 75 675 404 HOH HOH . C 3 HOH A 76 676 405 HOH HOH . C 3 HOH A 77 677 406 HOH HOH . C 3 HOH A 78 678 407 HOH HOH . C 3 HOH A 79 679 408 HOH HOH . C 3 HOH A 80 680 409 HOH HOH . C 3 HOH A 81 681 410 HOH HOH . C 3 HOH A 82 682 411 HOH HOH . C 3 HOH A 83 683 412 HOH HOH . C 3 HOH A 84 684 413 HOH HOH . C 3 HOH A 85 685 414 HOH HOH . C 3 HOH A 86 686 415 HOH HOH . C 3 HOH A 87 687 416 HOH HOH . C 3 HOH A 88 688 417 HOH HOH . C 3 HOH A 89 689 418 HOH HOH . C 3 HOH A 90 690 419 HOH HOH . C 3 HOH A 91 691 420 HOH HOH . C 3 HOH A 92 692 421 HOH HOH . C 3 HOH A 93 693 422 HOH HOH . C 3 HOH A 94 694 423 HOH HOH . C 3 HOH A 95 695 424 HOH HOH . C 3 HOH A 96 696 425 HOH HOH . C 3 HOH A 97 697 426 HOH HOH . C 3 HOH A 98 698 427 HOH HOH . C 3 HOH A 99 699 428 HOH HOH . C 3 HOH A 100 700 429 HOH HOH . C 3 HOH A 101 701 430 HOH HOH . C 3 HOH A 102 702 431 HOH HOH . C 3 HOH A 103 703 432 HOH HOH . C 3 HOH A 104 704 433 HOH HOH . C 3 HOH A 105 705 434 HOH HOH . C 3 HOH A 106 706 435 HOH HOH . C 3 HOH A 107 707 436 HOH HOH . C 3 HOH A 108 708 437 HOH HOH . C 3 HOH A 109 709 438 HOH HOH . C 3 HOH A 110 710 439 HOH HOH . C 3 HOH A 111 711 440 HOH HOH . C 3 HOH A 112 712 441 HOH HOH . C 3 HOH A 113 713 442 HOH HOH . C 3 HOH A 114 714 443 HOH HOH . C 3 HOH A 115 715 444 HOH HOH . C 3 HOH A 116 716 445 HOH HOH . C 3 HOH A 117 717 446 HOH HOH . C 3 HOH A 118 718 447 HOH HOH . C 3 HOH A 119 719 448 HOH HOH . C 3 HOH A 120 720 449 HOH HOH . C 3 HOH A 121 721 450 HOH HOH . C 3 HOH A 122 722 451 HOH HOH . C 3 HOH A 123 723 452 HOH HOH . C 3 HOH A 124 724 453 HOH HOH . C 3 HOH A 125 725 454 HOH HOH . C 3 HOH A 126 726 455 HOH HOH . C 3 HOH A 127 727 456 HOH HOH . C 3 HOH A 128 728 457 HOH HOH . C 3 HOH A 129 729 458 HOH HOH . C 3 HOH A 130 730 459 HOH HOH . C 3 HOH A 131 731 460 HOH HOH . C 3 HOH A 132 732 461 HOH HOH . C 3 HOH A 133 733 462 HOH HOH . C 3 HOH A 134 734 463 HOH HOH . C 3 HOH A 135 735 464 HOH HOH . C 3 HOH A 136 736 465 HOH HOH . C 3 HOH A 137 737 466 HOH HOH . C 3 HOH A 138 738 467 HOH HOH . C 3 HOH A 139 739 468 HOH HOH . C 3 HOH A 140 740 469 HOH HOH . C 3 HOH A 141 741 470 HOH HOH . C 3 HOH A 142 742 471 HOH HOH . C 3 HOH A 143 743 472 HOH HOH . C 3 HOH A 144 744 473 HOH HOH . C 3 HOH A 145 745 474 HOH HOH . C 3 HOH A 146 746 475 HOH HOH . C 3 HOH A 147 747 476 HOH HOH . C 3 HOH A 148 748 477 HOH HOH . C 3 HOH A 149 749 478 HOH HOH . C 3 HOH A 150 750 479 HOH HOH . C 3 HOH A 151 751 480 HOH HOH . C 3 HOH A 152 752 481 HOH HOH . C 3 HOH A 153 753 482 HOH HOH . C 3 HOH A 154 754 483 HOH HOH . C 3 HOH A 155 755 484 HOH HOH . C 3 HOH A 156 756 485 HOH HOH . C 3 HOH A 157 757 486 HOH HOH . C 3 HOH A 158 758 487 HOH HOH . C 3 HOH A 159 759 488 HOH HOH . C 3 HOH A 160 760 489 HOH HOH . C 3 HOH A 161 761 490 HOH HOH . C 3 HOH A 162 762 491 HOH HOH . C 3 HOH A 163 763 492 HOH HOH . C 3 HOH A 164 764 493 HOH HOH . C 3 HOH A 165 765 494 HOH HOH . C 3 HOH A 166 766 495 HOH HOH . C 3 HOH A 167 767 496 HOH HOH . C 3 HOH A 168 768 497 HOH HOH . C 3 HOH A 169 769 498 HOH HOH . C 3 HOH A 170 770 499 HOH HOH . C 3 HOH A 171 771 500 HOH HOH . C 3 HOH A 172 772 501 HOH HOH . C 3 HOH A 173 773 502 HOH HOH . C 3 HOH A 174 774 503 HOH HOH . C 3 HOH A 175 775 504 HOH HOH . C 3 HOH A 176 776 505 HOH HOH . C 3 HOH A 177 777 506 HOH HOH . C 3 HOH A 178 778 507 HOH HOH . C 3 HOH A 179 779 508 HOH HOH . C 3 HOH A 180 780 509 HOH HOH . C 3 HOH A 181 781 510 HOH HOH . C 3 HOH A 182 782 511 HOH HOH . C 3 HOH A 183 783 512 HOH HOH . C 3 HOH A 184 784 513 HOH HOH . C 3 HOH A 185 785 514 HOH HOH . C 3 HOH A 186 786 515 HOH HOH . C 3 HOH A 187 787 516 HOH HOH . C 3 HOH A 188 788 517 HOH HOH . C 3 HOH A 189 789 518 HOH HOH . C 3 HOH A 190 790 519 HOH HOH . C 3 HOH A 191 791 520 HOH HOH . C 3 HOH A 192 792 521 HOH HOH . C 3 HOH A 193 793 522 HOH HOH . C 3 HOH A 194 794 523 HOH HOH . C 3 HOH A 195 795 524 HOH HOH . C 3 HOH A 196 796 525 HOH HOH . C 3 HOH A 197 797 526 HOH HOH . C 3 HOH A 198 798 527 HOH HOH . C 3 HOH A 199 799 528 HOH HOH . C 3 HOH A 200 800 529 HOH HOH . C 3 HOH A 201 801 530 HOH HOH . C 3 HOH A 202 802 531 HOH HOH . C 3 HOH A 203 803 532 HOH HOH . C 3 HOH A 204 804 533 HOH HOH . C 3 HOH A 205 805 534 HOH HOH . C 3 HOH A 206 806 535 HOH HOH . C 3 HOH A 207 807 536 HOH HOH . C 3 HOH A 208 808 537 HOH HOH . C 3 HOH A 209 809 538 HOH HOH . C 3 HOH A 210 810 539 HOH HOH . C 3 HOH A 211 811 540 HOH HOH . C 3 HOH A 212 812 541 HOH HOH . C 3 HOH A 213 813 542 HOH HOH . C 3 HOH A 214 814 543 HOH HOH . C 3 HOH A 215 815 544 HOH HOH . C 3 HOH A 216 816 545 HOH HOH . C 3 HOH A 217 817 546 HOH HOH . C 3 HOH A 218 818 547 HOH HOH . C 3 HOH A 219 819 548 HOH HOH . C 3 HOH A 220 820 549 HOH HOH . C 3 HOH A 221 821 550 HOH HOH . C 3 HOH A 222 822 551 HOH HOH . C 3 HOH A 223 823 552 HOH HOH . C 3 HOH A 224 824 553 HOH HOH . C 3 HOH A 225 825 554 HOH HOH . C 3 HOH A 226 826 555 HOH HOH . C 3 HOH A 227 827 556 HOH HOH . C 3 HOH A 228 828 557 HOH HOH . C 3 HOH A 229 829 558 HOH HOH . C 3 HOH A 230 830 559 HOH HOH . C 3 HOH A 231 831 560 HOH HOH . C 3 HOH A 232 832 561 HOH HOH . C 3 HOH A 233 833 562 HOH HOH . C 3 HOH A 234 834 563 HOH HOH . C 3 HOH A 235 835 564 HOH HOH . C 3 HOH A 236 836 565 HOH HOH . C 3 HOH A 237 837 566 HOH HOH . C 3 HOH A 238 838 567 HOH HOH . C 3 HOH A 239 839 568 HOH HOH . C 3 HOH A 240 840 569 HOH HOH . C 3 HOH A 241 841 570 HOH HOH . C 3 HOH A 242 842 571 HOH HOH . C 3 HOH A 243 843 572 HOH HOH . C 3 HOH A 244 844 573 HOH HOH . C 3 HOH A 245 845 574 HOH HOH . C 3 HOH A 246 846 575 HOH HOH . C 3 HOH A 247 847 576 HOH HOH . C 3 HOH A 248 848 577 HOH HOH . C 3 HOH A 249 849 578 HOH HOH . C 3 HOH A 250 850 579 HOH HOH . C 3 HOH A 251 851 580 HOH HOH . C 3 HOH A 252 852 581 HOH HOH . C 3 HOH A 253 853 582 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 65.905 -19.41 -25.736 1 16 ? PB ADP 600 A 1 HETATM 2 O O1B ADP . . . B 2 65.466 -19.162 -24.351 1 13.59 ? O1B ADP 600 A 1 HETATM 3 O O2B ADP . . . B 2 65.472 -18.333 -26.753 1 13.98 ? O2B ADP 600 A 1 HETATM 4 O O3B ADP . . . B 2 67.444 -19.592 -25.83 1 15.75 ? O3B ADP 600 A 1 HETATM 5 P PA ADP . . . B 2 64.503 -21.359 -27.435 1 22.53 ? PA ADP 600 A 1 HETATM 6 O O1A ADP . . . B 2 63.12 -20.809 -27.468 1 19.02 ? O1A ADP 600 A 1 HETATM 7 O O2A ADP . . . B 2 65.271 -21.081 -28.647 1 22.09 ? O2A ADP 600 A 1 HETATM 8 O O3A ADP . . . B 2 65.389 -20.787 -26.174 1 16.92 ? O3A ADP 600 A 1 HETATM 9 O O5' ADP . . . B 2 64.495 -22.914 -27.169 1 25.74 ? O5' ADP 600 A 1 HETATM 10 C C5' ADP . . . B 2 65.315 -24.02 -27.358 1 28.14 ? C5' ADP 600 A 1 HETATM 11 C C4' ADP . . . B 2 64.861 -25.18 -27.92 1 28.47 ? C4' ADP 600 A 1 HETATM 12 O O4' ADP . . . B 2 64.212 -25.777 -26.872 1 26.8 ? O4' ADP 600 A 1 HETATM 13 C C3' ADP . . . B 2 63.67 -25.044 -28.899 1 29.53 ? C3' ADP 600 A 1 HETATM 14 O O3' ADP . . . B 2 64.06 -26.046 -29.785 1 30.27 ? O3' ADP 600 A 1 HETATM 15 C C2' ADP . . . B 2 62.442 -25.501 -28.36 1 28.86 ? C2' ADP 600 A 1 HETATM 16 O O2' ADP . . . B 2 61.603 -25.935 -29.461 1 33.64 ? O2' ADP 600 A 1 HETATM 17 C C1' ADP . . . B 2 62.923 -26.025 -26.925 1 27.94 ? C1' ADP 600 A 1 HETATM 18 N N9 ADP . . . B 2 62.108 -25.618 -25.885 1 24.24 ? N9 ADP 600 A 1 HETATM 19 C C8 ADP . . . B 2 62.184 -24.525 -25.07 1 25.31 ? C8 ADP 600 A 1 HETATM 20 N N7 ADP . . . B 2 61.275 -24.448 -24.213 1 22.87 ? N7 ADP 600 A 1 HETATM 21 C C5 ADP . . . B 2 60.511 -25.56 -24.442 1 21.55 ? C5 ADP 600 A 1 HETATM 22 C C6 ADP . . . B 2 59.294 -26.099 -23.826 1 18.99 ? C6 ADP 600 A 1 HETATM 23 N N6 ADP . . . B 2 58.706 -25.463 -22.783 1 19.95 ? N6 ADP 600 A 1 HETATM 24 N N1 ADP . . . B 2 58.734 -27.306 -24.318 1 21.11 ? N1 ADP 600 A 1 HETATM 25 C C2 ADP . . . B 2 59.335 -27.965 -25.393 1 20.37 ? C2 ADP 600 A 1 HETATM 26 N N3 ADP . . . B 2 60.481 -27.524 -26.028 1 23.34 ? N3 ADP 600 A 1 HETATM 27 C C4 ADP . . . B 2 61.009 -26.308 -25.523 1 22.87 ? C4 ADP 600 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 619 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #