data_1IN6 # _model_server_result.job_id nVghJB4jbAdEZmqjL14ANw _model_server_result.datetime_utc '2025-06-28 21:07:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1in6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":700}' # _entry.id 1IN6 # _exptl.entry_id 1IN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IN6 _cell.length_a 86.559 _cell.length_b 86.559 _cell.length_c 81.36 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B CO CO . A CO 600 1_555 C OXT ACT . A ACT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc2 B CO CO . A CO 600 1_555 E O HOH . A HOH 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 7 n n PB O2B ADP sing 8 n n PB O3B ADP sing 9 n n PB O3A ADP sing 10 n n O2B HOB2 ADP sing 11 n n O3B HOB3 ADP sing 12 n n PA O1A ADP doub 13 n n PA O2A ADP sing 14 n n PA O3A ADP sing 15 n n PA O5' ADP sing 16 n n O2A HOA2 ADP sing 17 n n O5' C5' ADP sing 18 n n C5' C4' ADP sing 19 n n C5' "H5'1" ADP sing 20 n n C5' "H5'2" ADP sing 21 n n C4' O4' ADP sing 22 n n C4' C3' ADP sing 23 n n C4' H4' ADP sing 24 n n O4' C1' ADP sing 25 n n C3' O3' ADP sing 26 n n C3' C2' ADP sing 27 n n C3' H3' ADP sing 28 n n O3' HO3' ADP sing 29 n n C2' O2' ADP sing 30 n n C2' C1' ADP sing 31 n n C2' H2' ADP sing 32 n n O2' HO2' ADP sing 33 n n C1' N9 ADP sing 34 n n C1' H1' ADP sing 35 n n N9 C8 ADP sing 36 n y N9 C4 ADP sing 37 n y C8 N7 ADP doub 38 n y C8 H8 ADP sing 39 n n N7 C5 ADP sing 40 n y C5 C6 ADP sing 41 n y C5 C4 ADP doub 42 n y C6 N6 ADP sing 43 n n C6 N1 ADP doub 44 n y N6 HN61 ADP sing 45 n n N6 HN62 ADP sing 46 n n N1 C2 ADP sing 47 n y C2 N3 ADP doub 48 n y C2 H2 ADP sing 49 n n N3 C4 ADP sing 50 n y # _atom_sites.entry_id 1IN6 _atom_sites.fract_transf_matrix[1][1] 0.011553 _atom_sites.fract_transf_matrix[1][2] 0.00667 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 600 600 CO CO . C 3 ACT A 1 601 601 ACT ACT . D 4 ADP A 1 700 700 ADP ADP . E 5 HOH A 1 701 330 HOH HOH . E 5 HOH A 2 702 331 HOH HOH . E 5 HOH A 3 703 332 HOH HOH . E 5 HOH A 4 704 333 HOH HOH . E 5 HOH A 5 705 334 HOH HOH . E 5 HOH A 6 706 335 HOH HOH . E 5 HOH A 7 707 336 HOH HOH . E 5 HOH A 8 708 337 HOH HOH . E 5 HOH A 9 709 338 HOH HOH . E 5 HOH A 10 710 339 HOH HOH . E 5 HOH A 11 711 340 HOH HOH . E 5 HOH A 12 712 341 HOH HOH . E 5 HOH A 13 713 342 HOH HOH . E 5 HOH A 14 714 343 HOH HOH . E 5 HOH A 15 715 344 HOH HOH . E 5 HOH A 16 716 345 HOH HOH . E 5 HOH A 17 717 346 HOH HOH . E 5 HOH A 18 718 347 HOH HOH . E 5 HOH A 19 719 348 HOH HOH . E 5 HOH A 20 720 349 HOH HOH . E 5 HOH A 21 721 350 HOH HOH . E 5 HOH A 22 722 351 HOH HOH . E 5 HOH A 23 723 352 HOH HOH . E 5 HOH A 24 724 353 HOH HOH . E 5 HOH A 25 725 354 HOH HOH . E 5 HOH A 26 726 355 HOH HOH . E 5 HOH A 27 727 356 HOH HOH . E 5 HOH A 28 728 357 HOH HOH . E 5 HOH A 29 729 358 HOH HOH . E 5 HOH A 30 730 359 HOH HOH . E 5 HOH A 31 731 360 HOH HOH . E 5 HOH A 32 732 361 HOH HOH . E 5 HOH A 33 733 362 HOH HOH . E 5 HOH A 34 734 363 HOH HOH . E 5 HOH A 35 735 364 HOH HOH . E 5 HOH A 36 736 365 HOH HOH . E 5 HOH A 37 737 366 HOH HOH . E 5 HOH A 38 738 367 HOH HOH . E 5 HOH A 39 739 368 HOH HOH . E 5 HOH A 40 740 369 HOH HOH . E 5 HOH A 41 741 370 HOH HOH . E 5 HOH A 42 742 371 HOH HOH . E 5 HOH A 43 743 372 HOH HOH . E 5 HOH A 44 744 373 HOH HOH . E 5 HOH A 45 745 374 HOH HOH . E 5 HOH A 46 746 375 HOH HOH . E 5 HOH A 47 747 376 HOH HOH . E 5 HOH A 48 748 377 HOH HOH . E 5 HOH A 49 749 378 HOH HOH . E 5 HOH A 50 750 379 HOH HOH . E 5 HOH A 51 751 380 HOH HOH . E 5 HOH A 52 752 381 HOH HOH . E 5 HOH A 53 753 382 HOH HOH . E 5 HOH A 54 754 383 HOH HOH . E 5 HOH A 55 755 384 HOH HOH . E 5 HOH A 56 756 385 HOH HOH . E 5 HOH A 57 757 386 HOH HOH . E 5 HOH A 58 758 387 HOH HOH . E 5 HOH A 59 759 388 HOH HOH . E 5 HOH A 60 760 389 HOH HOH . E 5 HOH A 61 761 390 HOH HOH . E 5 HOH A 62 762 391 HOH HOH . E 5 HOH A 63 763 392 HOH HOH . E 5 HOH A 64 764 393 HOH HOH . E 5 HOH A 65 765 394 HOH HOH . E 5 HOH A 66 766 395 HOH HOH . E 5 HOH A 67 767 396 HOH HOH . E 5 HOH A 68 768 397 HOH HOH . E 5 HOH A 69 769 398 HOH HOH . E 5 HOH A 70 770 399 HOH HOH . E 5 HOH A 71 771 400 HOH HOH . E 5 HOH A 72 772 401 HOH HOH . E 5 HOH A 73 773 402 HOH HOH . E 5 HOH A 74 774 403 HOH HOH . E 5 HOH A 75 775 404 HOH HOH . E 5 HOH A 76 776 405 HOH HOH . E 5 HOH A 77 777 406 HOH HOH . E 5 HOH A 78 778 407 HOH HOH . E 5 HOH A 79 779 408 HOH HOH . E 5 HOH A 80 780 409 HOH HOH . E 5 HOH A 81 781 410 HOH HOH . E 5 HOH A 82 782 411 HOH HOH . E 5 HOH A 83 783 412 HOH HOH . E 5 HOH A 84 784 413 HOH HOH . E 5 HOH A 85 785 414 HOH HOH . E 5 HOH A 86 786 415 HOH HOH . E 5 HOH A 87 787 416 HOH HOH . E 5 HOH A 88 788 417 HOH HOH . E 5 HOH A 89 789 418 HOH HOH . E 5 HOH A 90 790 419 HOH HOH . E 5 HOH A 91 791 420 HOH HOH . E 5 HOH A 92 792 421 HOH HOH . E 5 HOH A 93 793 422 HOH HOH . E 5 HOH A 94 794 423 HOH HOH . E 5 HOH A 95 795 424 HOH HOH . E 5 HOH A 96 796 425 HOH HOH . E 5 HOH A 97 797 426 HOH HOH . E 5 HOH A 98 798 427 HOH HOH . E 5 HOH A 99 799 428 HOH HOH . E 5 HOH A 100 800 429 HOH HOH . E 5 HOH A 101 801 430 HOH HOH . E 5 HOH A 102 802 431 HOH HOH . E 5 HOH A 103 803 432 HOH HOH . E 5 HOH A 104 804 433 HOH HOH . E 5 HOH A 105 805 434 HOH HOH . E 5 HOH A 106 806 435 HOH HOH . E 5 HOH A 107 807 436 HOH HOH . E 5 HOH A 108 808 437 HOH HOH . E 5 HOH A 109 809 438 HOH HOH . E 5 HOH A 110 810 439 HOH HOH . E 5 HOH A 111 811 440 HOH HOH . E 5 HOH A 112 812 441 HOH HOH . E 5 HOH A 113 813 442 HOH HOH . E 5 HOH A 114 814 443 HOH HOH . E 5 HOH A 115 815 444 HOH HOH . E 5 HOH A 116 816 445 HOH HOH . E 5 HOH A 117 817 446 HOH HOH . E 5 HOH A 118 818 447 HOH HOH . E 5 HOH A 119 819 448 HOH HOH . E 5 HOH A 120 820 449 HOH HOH . E 5 HOH A 121 821 450 HOH HOH . E 5 HOH A 122 822 451 HOH HOH . E 5 HOH A 123 823 452 HOH HOH . E 5 HOH A 124 824 453 HOH HOH . E 5 HOH A 125 825 454 HOH HOH . E 5 HOH A 126 826 455 HOH HOH . E 5 HOH A 127 827 456 HOH HOH . E 5 HOH A 128 828 457 HOH HOH . E 5 HOH A 129 829 458 HOH HOH . E 5 HOH A 130 830 459 HOH HOH . E 5 HOH A 131 831 462 HOH HOH . E 5 HOH A 132 832 463 HOH HOH . E 5 HOH A 133 833 464 HOH HOH . E 5 HOH A 134 834 465 HOH HOH . E 5 HOH A 135 835 466 HOH HOH . E 5 HOH A 136 836 467 HOH HOH . E 5 HOH A 137 837 468 HOH HOH . E 5 HOH A 138 838 469 HOH HOH . E 5 HOH A 139 839 470 HOH HOH . E 5 HOH A 140 840 471 HOH HOH . E 5 HOH A 141 841 472 HOH HOH . E 5 HOH A 142 842 473 HOH HOH . E 5 HOH A 143 843 474 HOH HOH . E 5 HOH A 144 844 475 HOH HOH . E 5 HOH A 145 845 476 HOH HOH . E 5 HOH A 146 846 477 HOH HOH . E 5 HOH A 147 847 478 HOH HOH . E 5 HOH A 148 848 479 HOH HOH . E 5 HOH A 149 849 480 HOH HOH . E 5 HOH A 150 850 481 HOH HOH . E 5 HOH A 151 851 482 HOH HOH . E 5 HOH A 152 852 483 HOH HOH . E 5 HOH A 153 853 484 HOH HOH . E 5 HOH A 154 854 485 HOH HOH . E 5 HOH A 155 855 486 HOH HOH . E 5 HOH A 156 856 487 HOH HOH . E 5 HOH A 157 857 488 HOH HOH . E 5 HOH A 158 858 489 HOH HOH . E 5 HOH A 159 859 490 HOH HOH . E 5 HOH A 160 860 491 HOH HOH . E 5 HOH A 161 861 492 HOH HOH . E 5 HOH A 162 862 493 HOH HOH . E 5 HOH A 163 863 494 HOH HOH . E 5 HOH A 164 864 495 HOH HOH . E 5 HOH A 165 865 496 HOH HOH . E 5 HOH A 166 866 497 HOH HOH . E 5 HOH A 167 867 498 HOH HOH . E 5 HOH A 168 868 499 HOH HOH . E 5 HOH A 169 869 500 HOH HOH . E 5 HOH A 170 870 501 HOH HOH . E 5 HOH A 171 871 502 HOH HOH . E 5 HOH A 172 872 503 HOH HOH . E 5 HOH A 173 873 504 HOH HOH . E 5 HOH A 174 874 505 HOH HOH . E 5 HOH A 175 875 506 HOH HOH . E 5 HOH A 176 876 507 HOH HOH . E 5 HOH A 177 877 508 HOH HOH . E 5 HOH A 178 878 509 HOH HOH . E 5 HOH A 179 879 510 HOH HOH . E 5 HOH A 180 880 511 HOH HOH . E 5 HOH A 181 881 512 HOH HOH . E 5 HOH A 182 882 513 HOH HOH . E 5 HOH A 183 883 514 HOH HOH . E 5 HOH A 184 884 515 HOH HOH . E 5 HOH A 185 885 516 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 4 65.836 -19.518 -26.19 1 20.91 ? PB ADP 700 A 1 HETATM 2 O O1B ADP . . . D 4 65.364 -19.264 -24.817 1 21.29 ? O1B ADP 700 A 1 HETATM 3 O O2B ADP . . . D 4 65.386 -18.439 -27.197 1 21.1 ? O2B ADP 700 A 1 HETATM 4 O O3B ADP . . . D 4 67.373 -19.655 -26.241 1 21.29 ? O3B ADP 700 A 1 HETATM 5 P PA ADP . . . D 4 64.37 -21.491 -27.811 1 21.21 ? PA ADP 700 A 1 HETATM 6 O O1A ADP . . . D 4 63.026 -20.873 -27.78 1 21.09 ? O1A ADP 700 A 1 HETATM 7 O O2A ADP . . . D 4 65.063 -21.34 -29.103 1 21.75 ? O2A ADP 700 A 1 HETATM 8 O O3A ADP . . . D 4 65.3 -20.894 -26.608 1 21.37 ? O3A ADP 700 A 1 HETATM 9 O O5' ADP . . . D 4 64.304 -23.027 -27.438 1 21.96 ? O5' ADP 700 A 1 HETATM 10 C C5' ADP . . . D 4 65.083 -24.172 -27.495 1 22.89 ? C5' ADP 700 A 1 HETATM 11 C C4' ADP . . . D 4 64.607 -25.334 -28.05 1 23.86 ? C4' ADP 700 A 1 HETATM 12 O O4' ADP . . . D 4 63.913 -25.916 -27.007 1 23.53 ? O4' ADP 700 A 1 HETATM 13 C C3' ADP . . . D 4 63.449 -25.16 -29.057 1 24.27 ? C3' ADP 700 A 1 HETATM 14 O O3' ADP . . . D 4 63.828 -26.188 -29.92 1 24.98 ? O3' ADP 700 A 1 HETATM 15 C C2' ADP . . . D 4 62.188 -25.575 -28.546 1 24.17 ? C2' ADP 700 A 1 HETATM 16 O O2' ADP . . . D 4 61.365 -25.972 -29.666 1 26.1 ? O2' ADP 700 A 1 HETATM 17 C C1' ADP . . . D 4 62.607 -26.123 -27.096 1 23.91 ? C1' ADP 700 A 1 HETATM 18 N N9 ADP . . . D 4 61.771 -25.679 -26.088 1 23.19 ? N9 ADP 700 A 1 HETATM 19 C C8 ADP . . . D 4 61.859 -24.563 -25.32 1 23.11 ? C8 ADP 700 A 1 HETATM 20 N N7 ADP . . . D 4 60.955 -24.437 -24.476 1 22.9 ? N7 ADP 700 A 1 HETATM 21 C C5 ADP . . . D 4 60.164 -25.539 -24.663 1 23.09 ? C5 ADP 700 A 1 HETATM 22 C C6 ADP . . . D 4 58.947 -26.031 -24.015 1 23.24 ? C6 ADP 700 A 1 HETATM 23 N N6 ADP . . . D 4 58.392 -25.32 -23.002 1 23.36 ? N6 ADP 700 A 1 HETATM 24 N N1 ADP . . . D 4 58.343 -27.245 -24.448 1 23.58 ? N1 ADP 700 A 1 HETATM 25 C C2 ADP . . . D 4 58.93 -27.964 -25.489 1 23.23 ? C2 ADP 700 A 1 HETATM 26 N N3 ADP . . . D 4 60.091 -27.57 -26.15 1 23.65 ? N3 ADP 700 A 1 HETATM 27 C C4 ADP . . . D 4 60.66 -26.35 -25.692 1 23.26 ? C4 ADP 700 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #