data_1IN7 # _model_server_result.job_id F0P5b4ievAwM9WOVpSI_VQ _model_server_result.datetime_utc '2025-06-28 20:36:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1in7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 1IN7 # _exptl.entry_id 1IN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IN7 _cell.length_a 86.639 _cell.length_b 86.639 _cell.length_c 82.431 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 7 n n PB O2B ADP sing 8 n n PB O3B ADP sing 9 n n PB O3A ADP sing 10 n n O2B HOB2 ADP sing 11 n n O3B HOB3 ADP sing 12 n n PA O1A ADP doub 13 n n PA O2A ADP sing 14 n n PA O3A ADP sing 15 n n PA O5' ADP sing 16 n n O2A HOA2 ADP sing 17 n n O5' C5' ADP sing 18 n n C5' C4' ADP sing 19 n n C5' "H5'1" ADP sing 20 n n C5' "H5'2" ADP sing 21 n n C4' O4' ADP sing 22 n n C4' C3' ADP sing 23 n n C4' H4' ADP sing 24 n n O4' C1' ADP sing 25 n n C3' O3' ADP sing 26 n n C3' C2' ADP sing 27 n n C3' H3' ADP sing 28 n n O3' HO3' ADP sing 29 n n C2' O2' ADP sing 30 n n C2' C1' ADP sing 31 n n C2' H2' ADP sing 32 n n O2' HO2' ADP sing 33 n n C1' N9 ADP sing 34 n n C1' H1' ADP sing 35 n n N9 C8 ADP sing 36 n y N9 C4 ADP sing 37 n y C8 N7 ADP doub 38 n y C8 H8 ADP sing 39 n n N7 C5 ADP sing 40 n y C5 C6 ADP sing 41 n y C5 C4 ADP doub 42 n y C6 N6 ADP sing 43 n n C6 N1 ADP doub 44 n y N6 HN61 ADP sing 45 n n N6 HN62 ADP sing 46 n n N1 C2 ADP sing 47 n y C2 N3 ADP doub 48 n y C2 H2 ADP sing 49 n n N3 C4 ADP sing 50 n y # _atom_sites.entry_id 1IN7 _atom_sites.fract_transf_matrix[1][1] 0.011542 _atom_sites.fract_transf_matrix[1][2] 0.006664 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 601 601 ACT ACT . C 2 ACT A 1 602 602 ACT ACT . D 3 ADP A 1 600 600 ADP ADP . E 4 HOH A 1 603 330 HOH HOH . E 4 HOH A 2 604 331 HOH HOH . E 4 HOH A 3 605 332 HOH HOH . E 4 HOH A 4 606 333 HOH HOH . E 4 HOH A 5 607 334 HOH HOH . E 4 HOH A 6 608 335 HOH HOH . E 4 HOH A 7 609 336 HOH HOH . E 4 HOH A 8 610 337 HOH HOH . E 4 HOH A 9 611 338 HOH HOH . E 4 HOH A 10 612 339 HOH HOH . E 4 HOH A 11 613 340 HOH HOH . E 4 HOH A 12 614 341 HOH HOH . E 4 HOH A 13 615 342 HOH HOH . E 4 HOH A 14 616 343 HOH HOH . E 4 HOH A 15 617 344 HOH HOH . E 4 HOH A 16 618 345 HOH HOH . E 4 HOH A 17 619 346 HOH HOH . E 4 HOH A 18 620 347 HOH HOH . E 4 HOH A 19 621 348 HOH HOH . E 4 HOH A 20 622 349 HOH HOH . E 4 HOH A 21 623 350 HOH HOH . E 4 HOH A 22 624 351 HOH HOH . E 4 HOH A 23 625 352 HOH HOH . E 4 HOH A 24 626 353 HOH HOH . E 4 HOH A 25 627 354 HOH HOH . E 4 HOH A 26 628 355 HOH HOH . E 4 HOH A 27 629 356 HOH HOH . E 4 HOH A 28 630 357 HOH HOH . E 4 HOH A 29 631 358 HOH HOH . E 4 HOH A 30 632 359 HOH HOH . E 4 HOH A 31 633 360 HOH HOH . E 4 HOH A 32 634 361 HOH HOH . E 4 HOH A 33 635 362 HOH HOH . E 4 HOH A 34 636 363 HOH HOH . E 4 HOH A 35 637 364 HOH HOH . E 4 HOH A 36 638 365 HOH HOH . E 4 HOH A 37 639 366 HOH HOH . E 4 HOH A 38 640 367 HOH HOH . E 4 HOH A 39 641 368 HOH HOH . E 4 HOH A 40 642 369 HOH HOH . E 4 HOH A 41 643 370 HOH HOH . E 4 HOH A 42 644 371 HOH HOH . E 4 HOH A 43 645 372 HOH HOH . E 4 HOH A 44 646 373 HOH HOH . E 4 HOH A 45 647 374 HOH HOH . E 4 HOH A 46 648 375 HOH HOH . E 4 HOH A 47 649 376 HOH HOH . E 4 HOH A 48 650 377 HOH HOH . E 4 HOH A 49 651 378 HOH HOH . E 4 HOH A 50 652 379 HOH HOH . E 4 HOH A 51 653 380 HOH HOH . E 4 HOH A 52 654 381 HOH HOH . E 4 HOH A 53 655 382 HOH HOH . E 4 HOH A 54 656 383 HOH HOH . E 4 HOH A 55 657 384 HOH HOH . E 4 HOH A 56 658 385 HOH HOH . E 4 HOH A 57 659 386 HOH HOH . E 4 HOH A 58 660 387 HOH HOH . E 4 HOH A 59 661 388 HOH HOH . E 4 HOH A 60 662 389 HOH HOH . E 4 HOH A 61 663 390 HOH HOH . E 4 HOH A 62 664 391 HOH HOH . E 4 HOH A 63 665 392 HOH HOH . E 4 HOH A 64 666 393 HOH HOH . E 4 HOH A 65 667 394 HOH HOH . E 4 HOH A 66 668 395 HOH HOH . E 4 HOH A 67 669 396 HOH HOH . E 4 HOH A 68 670 397 HOH HOH . E 4 HOH A 69 671 398 HOH HOH . E 4 HOH A 70 672 399 HOH HOH . E 4 HOH A 71 673 400 HOH HOH . E 4 HOH A 72 674 401 HOH HOH . E 4 HOH A 73 675 402 HOH HOH . E 4 HOH A 74 676 403 HOH HOH . E 4 HOH A 75 677 404 HOH HOH . E 4 HOH A 76 678 405 HOH HOH . E 4 HOH A 77 679 406 HOH HOH . E 4 HOH A 78 680 407 HOH HOH . E 4 HOH A 79 681 408 HOH HOH . E 4 HOH A 80 682 409 HOH HOH . E 4 HOH A 81 683 410 HOH HOH . E 4 HOH A 82 684 411 HOH HOH . E 4 HOH A 83 685 412 HOH HOH . E 4 HOH A 84 686 413 HOH HOH . E 4 HOH A 85 687 414 HOH HOH . E 4 HOH A 86 688 415 HOH HOH . E 4 HOH A 87 689 416 HOH HOH . E 4 HOH A 88 690 417 HOH HOH . E 4 HOH A 89 691 418 HOH HOH . E 4 HOH A 90 692 419 HOH HOH . E 4 HOH A 91 693 420 HOH HOH . E 4 HOH A 92 694 421 HOH HOH . E 4 HOH A 93 695 422 HOH HOH . E 4 HOH A 94 696 423 HOH HOH . E 4 HOH A 95 697 424 HOH HOH . E 4 HOH A 96 698 425 HOH HOH . E 4 HOH A 97 699 426 HOH HOH . E 4 HOH A 98 700 427 HOH HOH . E 4 HOH A 99 701 428 HOH HOH . E 4 HOH A 100 702 429 HOH HOH . E 4 HOH A 101 703 430 HOH HOH . E 4 HOH A 102 704 431 HOH HOH . E 4 HOH A 103 705 432 HOH HOH . E 4 HOH A 104 706 433 HOH HOH . E 4 HOH A 105 707 434 HOH HOH . E 4 HOH A 106 708 435 HOH HOH . E 4 HOH A 107 709 436 HOH HOH . E 4 HOH A 108 710 437 HOH HOH . E 4 HOH A 109 711 438 HOH HOH . E 4 HOH A 110 712 439 HOH HOH . E 4 HOH A 111 713 440 HOH HOH . E 4 HOH A 112 714 441 HOH HOH . E 4 HOH A 113 715 442 HOH HOH . E 4 HOH A 114 716 443 HOH HOH . E 4 HOH A 115 717 444 HOH HOH . E 4 HOH A 116 718 445 HOH HOH . E 4 HOH A 117 719 446 HOH HOH . E 4 HOH A 118 720 447 HOH HOH . E 4 HOH A 119 721 448 HOH HOH . E 4 HOH A 120 722 449 HOH HOH . E 4 HOH A 121 723 450 HOH HOH . E 4 HOH A 122 724 451 HOH HOH . E 4 HOH A 123 725 452 HOH HOH . E 4 HOH A 124 726 453 HOH HOH . E 4 HOH A 125 727 454 HOH HOH . E 4 HOH A 126 728 455 HOH HOH . E 4 HOH A 127 729 456 HOH HOH . E 4 HOH A 128 730 457 HOH HOH . E 4 HOH A 129 731 458 HOH HOH . E 4 HOH A 130 732 459 HOH HOH . E 4 HOH A 131 733 460 HOH HOH . E 4 HOH A 132 734 461 HOH HOH . E 4 HOH A 133 735 462 HOH HOH . E 4 HOH A 134 736 463 HOH HOH . E 4 HOH A 135 737 464 HOH HOH . E 4 HOH A 136 738 465 HOH HOH . E 4 HOH A 137 739 466 HOH HOH . E 4 HOH A 138 740 467 HOH HOH . E 4 HOH A 139 741 468 HOH HOH . E 4 HOH A 140 742 469 HOH HOH . E 4 HOH A 141 743 470 HOH HOH . E 4 HOH A 142 744 471 HOH HOH . E 4 HOH A 143 745 472 HOH HOH . E 4 HOH A 144 746 473 HOH HOH . E 4 HOH A 145 747 474 HOH HOH . E 4 HOH A 146 748 475 HOH HOH . E 4 HOH A 147 749 476 HOH HOH . E 4 HOH A 148 750 477 HOH HOH . E 4 HOH A 149 751 478 HOH HOH . E 4 HOH A 150 752 479 HOH HOH . E 4 HOH A 151 753 480 HOH HOH . E 4 HOH A 152 754 481 HOH HOH . E 4 HOH A 153 755 482 HOH HOH . E 4 HOH A 154 756 483 HOH HOH . E 4 HOH A 155 757 484 HOH HOH . E 4 HOH A 156 758 485 HOH HOH . E 4 HOH A 157 759 486 HOH HOH . E 4 HOH A 158 760 487 HOH HOH . E 4 HOH A 159 761 488 HOH HOH . E 4 HOH A 160 762 489 HOH HOH . E 4 HOH A 161 763 490 HOH HOH . E 4 HOH A 162 764 491 HOH HOH . E 4 HOH A 163 765 492 HOH HOH . E 4 HOH A 164 766 493 HOH HOH . E 4 HOH A 165 767 494 HOH HOH . E 4 HOH A 166 768 495 HOH HOH . E 4 HOH A 167 769 496 HOH HOH . E 4 HOH A 168 770 497 HOH HOH . E 4 HOH A 169 771 498 HOH HOH . E 4 HOH A 170 772 499 HOH HOH . E 4 HOH A 171 773 500 HOH HOH . E 4 HOH A 172 774 501 HOH HOH . E 4 HOH A 173 775 502 HOH HOH . E 4 HOH A 174 776 503 HOH HOH . E 4 HOH A 175 777 504 HOH HOH . E 4 HOH A 176 778 505 HOH HOH . E 4 HOH A 177 779 506 HOH HOH . E 4 HOH A 178 780 507 HOH HOH . E 4 HOH A 179 781 508 HOH HOH . E 4 HOH A 180 782 509 HOH HOH . E 4 HOH A 181 783 510 HOH HOH . E 4 HOH A 182 784 511 HOH HOH . E 4 HOH A 183 785 512 HOH HOH . E 4 HOH A 184 786 513 HOH HOH . E 4 HOH A 185 787 514 HOH HOH . E 4 HOH A 186 788 515 HOH HOH . E 4 HOH A 187 789 516 HOH HOH . E 4 HOH A 188 790 517 HOH HOH . E 4 HOH A 189 791 518 HOH HOH . E 4 HOH A 190 792 519 HOH HOH . E 4 HOH A 191 793 520 HOH HOH . E 4 HOH A 192 794 521 HOH HOH . E 4 HOH A 193 795 522 HOH HOH . E 4 HOH A 194 796 523 HOH HOH . E 4 HOH A 195 797 524 HOH HOH . E 4 HOH A 196 798 525 HOH HOH . E 4 HOH A 197 799 526 HOH HOH . E 4 HOH A 198 800 527 HOH HOH . E 4 HOH A 199 801 528 HOH HOH . E 4 HOH A 200 802 529 HOH HOH . E 4 HOH A 201 803 530 HOH HOH . E 4 HOH A 202 804 531 HOH HOH . E 4 HOH A 203 805 532 HOH HOH . E 4 HOH A 204 806 533 HOH HOH . E 4 HOH A 205 807 534 HOH HOH . E 4 HOH A 206 808 535 HOH HOH . E 4 HOH A 207 809 536 HOH HOH . E 4 HOH A 208 810 537 HOH HOH . E 4 HOH A 209 811 538 HOH HOH . E 4 HOH A 210 812 539 HOH HOH . E 4 HOH A 211 813 540 HOH HOH . E 4 HOH A 212 814 541 HOH HOH . E 4 HOH A 213 815 542 HOH HOH . E 4 HOH A 214 816 543 HOH HOH . E 4 HOH A 215 817 544 HOH HOH . E 4 HOH A 216 818 545 HOH HOH . E 4 HOH A 217 819 546 HOH HOH . E 4 HOH A 218 820 547 HOH HOH . E 4 HOH A 219 821 548 HOH HOH . E 4 HOH A 220 822 549 HOH HOH . E 4 HOH A 221 823 550 HOH HOH . E 4 HOH A 222 824 551 HOH HOH . E 4 HOH A 223 825 552 HOH HOH . E 4 HOH A 224 826 553 HOH HOH . E 4 HOH A 225 827 554 HOH HOH . E 4 HOH A 226 828 555 HOH HOH . E 4 HOH A 227 829 556 HOH HOH . E 4 HOH A 228 830 557 HOH HOH . E 4 HOH A 229 831 558 HOH HOH . E 4 HOH A 230 832 559 HOH HOH . E 4 HOH A 231 833 560 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 3 65.907 -19.401 -26.172 1 18.25 ? PB ADP 600 A 1 HETATM 2 O O1B ADP . . . D 3 65.543 -19.155 -24.779 1 17.93 ? O1B ADP 600 A 1 HETATM 3 O O2B ADP . . . D 3 65.371 -18.331 -27.146 1 18.4 ? O2B ADP 600 A 1 HETATM 4 O O3B ADP . . . D 3 67.445 -19.57 -26.371 1 19.51 ? O3B ADP 600 A 1 HETATM 5 P PA ADP . . . D 3 64.428 -21.375 -27.785 1 19.07 ? PA ADP 600 A 1 HETATM 6 O O1A ADP . . . D 3 63.057 -20.785 -27.768 1 20.56 ? O1A ADP 600 A 1 HETATM 7 O O2A ADP . . . D 3 65.136 -21.116 -29.042 1 20.54 ? O2A ADP 600 A 1 HETATM 8 O O3A ADP . . . D 3 65.391 -20.784 -26.581 1 18.99 ? O3A ADP 600 A 1 HETATM 9 O O5' ADP . . . D 3 64.416 -22.924 -27.501 1 22.11 ? O5' ADP 600 A 1 HETATM 10 C C5' ADP . . . D 3 65.198 -24.038 -27.706 1 25.79 ? C5' ADP 600 A 1 HETATM 11 C C4' ADP . . . D 3 64.724 -25.206 -28.238 1 25.98 ? C4' ADP 600 A 1 HETATM 12 O O4' ADP . . . D 3 64.088 -25.803 -27.173 1 23.46 ? O4' ADP 600 A 1 HETATM 13 C C3' ADP . . . D 3 63.522 -25.093 -29.201 1 27.93 ? C3' ADP 600 A 1 HETATM 14 O O3' ADP . . . D 3 63.901 -26.124 -30.044 1 30.86 ? O3' ADP 600 A 1 HETATM 15 C C2' ADP . . . D 3 62.299 -25.547 -28.636 1 25.42 ? C2' ADP 600 A 1 HETATM 16 O O2' ADP . . . D 3 61.429 -25.999 -29.707 1 31.57 ? O2' ADP 600 A 1 HETATM 17 C C1' ADP . . . D 3 62.802 -26.063 -27.211 1 24.59 ? C1' ADP 600 A 1 HETATM 18 N N9 ADP . . . D 3 61.99 -25.653 -26.192 1 20.28 ? N9 ADP 600 A 1 HETATM 19 C C8 ADP . . . D 3 62.076 -24.561 -25.383 1 21.22 ? C8 ADP 600 A 1 HETATM 20 N N7 ADP . . . D 3 61.174 -24.474 -24.525 1 20.78 ? N7 ADP 600 A 1 HETATM 21 C C5 ADP . . . D 3 60.403 -25.586 -24.738 1 20.61 ? C5 ADP 600 A 1 HETATM 22 C C6 ADP . . . D 3 59.199 -26.104 -24.101 1 20.64 ? C6 ADP 600 A 1 HETATM 23 N N6 ADP . . . D 3 58.647 -25.432 -23.063 1 21.36 ? N6 ADP 600 A 1 HETATM 24 N N1 ADP . . . D 3 58.619 -27.317 -24.567 1 22.15 ? N1 ADP 600 A 1 HETATM 25 C C2 ADP . . . D 3 59.204 -27.995 -25.634 1 19.54 ? C2 ADP 600 A 1 HETATM 26 N N3 ADP . . . D 3 60.345 -27.566 -26.293 1 23.19 ? N3 ADP 600 A 1 HETATM 27 C C4 ADP . . . D 3 60.899 -26.357 -25.8 1 21.5 ? C4 ADP 600 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #