data_1IN8 # _model_server_result.job_id rRNyPbDsS7CRvXm1NPrbAw _model_server_result.datetime_utc '2025-06-28 20:14:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1in8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 1IN8 # _exptl.entry_id 1IN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IN8 _cell.length_a 86.639 _cell.length_b 86.639 _cell.length_c 81.601 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1IN8 _atom_sites.fract_transf_matrix[1][1] 0.011542 _atom_sites.fract_transf_matrix[1][2] 0.006664 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 700 700 ADP ADP . C 3 HOH A 1 500 500 HOH HOH . C 3 HOH A 2 501 501 HOH HOH . C 3 HOH A 3 502 502 HOH HOH . C 3 HOH A 4 503 503 HOH HOH . C 3 HOH A 5 504 504 HOH HOH . C 3 HOH A 6 505 505 HOH HOH . C 3 HOH A 7 506 506 HOH HOH . C 3 HOH A 8 507 507 HOH HOH . C 3 HOH A 9 508 508 HOH HOH . C 3 HOH A 10 509 509 HOH HOH . C 3 HOH A 11 510 510 HOH HOH . C 3 HOH A 12 511 511 HOH HOH . C 3 HOH A 13 512 512 HOH HOH . C 3 HOH A 14 513 513 HOH HOH . C 3 HOH A 15 514 514 HOH HOH . C 3 HOH A 16 515 515 HOH HOH . C 3 HOH A 17 516 516 HOH HOH . C 3 HOH A 18 517 517 HOH HOH . C 3 HOH A 19 518 518 HOH HOH . C 3 HOH A 20 519 519 HOH HOH . C 3 HOH A 21 520 520 HOH HOH . C 3 HOH A 22 521 521 HOH HOH . C 3 HOH A 23 522 522 HOH HOH . C 3 HOH A 24 523 523 HOH HOH . C 3 HOH A 25 524 524 HOH HOH . C 3 HOH A 26 525 525 HOH HOH . C 3 HOH A 27 526 526 HOH HOH . C 3 HOH A 28 527 527 HOH HOH . C 3 HOH A 29 528 528 HOH HOH . C 3 HOH A 30 529 529 HOH HOH . C 3 HOH A 31 530 530 HOH HOH . C 3 HOH A 32 531 531 HOH HOH . C 3 HOH A 33 532 532 HOH HOH . C 3 HOH A 34 533 533 HOH HOH . C 3 HOH A 35 534 534 HOH HOH . C 3 HOH A 36 535 535 HOH HOH . C 3 HOH A 37 536 536 HOH HOH . C 3 HOH A 38 537 537 HOH HOH . C 3 HOH A 39 538 538 HOH HOH . C 3 HOH A 40 539 539 HOH HOH . C 3 HOH A 41 540 540 HOH HOH . C 3 HOH A 42 541 541 HOH HOH . C 3 HOH A 43 542 542 HOH HOH . C 3 HOH A 44 543 543 HOH HOH . C 3 HOH A 45 544 544 HOH HOH . C 3 HOH A 46 545 545 HOH HOH . C 3 HOH A 47 546 546 HOH HOH . C 3 HOH A 48 547 547 HOH HOH . C 3 HOH A 49 548 548 HOH HOH . C 3 HOH A 50 549 549 HOH HOH . C 3 HOH A 51 550 550 HOH HOH . C 3 HOH A 52 551 551 HOH HOH . C 3 HOH A 53 552 552 HOH HOH . C 3 HOH A 54 553 553 HOH HOH . C 3 HOH A 55 554 554 HOH HOH . C 3 HOH A 56 555 555 HOH HOH . C 3 HOH A 57 556 556 HOH HOH . C 3 HOH A 58 557 557 HOH HOH . C 3 HOH A 59 558 558 HOH HOH . C 3 HOH A 60 559 559 HOH HOH . C 3 HOH A 61 560 560 HOH HOH . C 3 HOH A 62 561 561 HOH HOH . C 3 HOH A 63 562 562 HOH HOH . C 3 HOH A 64 563 563 HOH HOH . C 3 HOH A 65 564 564 HOH HOH . C 3 HOH A 66 565 565 HOH HOH . C 3 HOH A 67 566 566 HOH HOH . C 3 HOH A 68 567 567 HOH HOH . C 3 HOH A 69 568 568 HOH HOH . C 3 HOH A 70 569 569 HOH HOH . C 3 HOH A 71 570 570 HOH HOH . C 3 HOH A 72 571 571 HOH HOH . C 3 HOH A 73 572 572 HOH HOH . C 3 HOH A 74 573 573 HOH HOH . C 3 HOH A 75 574 574 HOH HOH . C 3 HOH A 76 575 575 HOH HOH . C 3 HOH A 77 576 576 HOH HOH . C 3 HOH A 78 577 577 HOH HOH . C 3 HOH A 79 578 578 HOH HOH . C 3 HOH A 80 579 579 HOH HOH . C 3 HOH A 81 580 580 HOH HOH . C 3 HOH A 82 581 581 HOH HOH . C 3 HOH A 83 582 582 HOH HOH . C 3 HOH A 84 583 583 HOH HOH . C 3 HOH A 85 584 584 HOH HOH . C 3 HOH A 86 585 585 HOH HOH . C 3 HOH A 87 586 586 HOH HOH . C 3 HOH A 88 587 587 HOH HOH . C 3 HOH A 89 588 588 HOH HOH . C 3 HOH A 90 589 589 HOH HOH . C 3 HOH A 91 590 590 HOH HOH . C 3 HOH A 92 591 591 HOH HOH . C 3 HOH A 93 592 592 HOH HOH . C 3 HOH A 94 593 593 HOH HOH . C 3 HOH A 95 594 594 HOH HOH . C 3 HOH A 96 595 595 HOH HOH . C 3 HOH A 97 596 596 HOH HOH . C 3 HOH A 98 597 597 HOH HOH . C 3 HOH A 99 598 598 HOH HOH . C 3 HOH A 100 599 599 HOH HOH . C 3 HOH A 101 600 600 HOH HOH . C 3 HOH A 102 601 601 HOH HOH . C 3 HOH A 103 602 602 HOH HOH . C 3 HOH A 104 603 603 HOH HOH . C 3 HOH A 105 604 604 HOH HOH . C 3 HOH A 106 605 605 HOH HOH . C 3 HOH A 107 606 606 HOH HOH . C 3 HOH A 108 607 607 HOH HOH . C 3 HOH A 109 608 608 HOH HOH . C 3 HOH A 110 609 609 HOH HOH . C 3 HOH A 111 610 610 HOH HOH . C 3 HOH A 112 611 611 HOH HOH . C 3 HOH A 113 612 612 HOH HOH . C 3 HOH A 114 613 613 HOH HOH . C 3 HOH A 115 614 614 HOH HOH . C 3 HOH A 116 615 615 HOH HOH . C 3 HOH A 117 616 616 HOH HOH . C 3 HOH A 118 617 617 HOH HOH . C 3 HOH A 119 618 618 HOH HOH . C 3 HOH A 120 619 619 HOH HOH . C 3 HOH A 121 620 620 HOH HOH . C 3 HOH A 122 621 621 HOH HOH . C 3 HOH A 123 622 622 HOH HOH . C 3 HOH A 124 623 623 HOH HOH . C 3 HOH A 125 624 624 HOH HOH . C 3 HOH A 126 625 625 HOH HOH . C 3 HOH A 127 626 626 HOH HOH . C 3 HOH A 128 627 627 HOH HOH . C 3 HOH A 129 628 628 HOH HOH . C 3 HOH A 130 629 629 HOH HOH . C 3 HOH A 131 630 630 HOH HOH . C 3 HOH A 132 631 631 HOH HOH . C 3 HOH A 133 632 632 HOH HOH . C 3 HOH A 134 633 633 HOH HOH . C 3 HOH A 135 634 634 HOH HOH . C 3 HOH A 136 635 635 HOH HOH . C 3 HOH A 137 636 636 HOH HOH . C 3 HOH A 138 637 637 HOH HOH . C 3 HOH A 139 638 638 HOH HOH . C 3 HOH A 140 640 640 HOH HOH . C 3 HOH A 141 641 641 HOH HOH . C 3 HOH A 142 642 642 HOH HOH . C 3 HOH A 143 643 643 HOH HOH . C 3 HOH A 144 644 644 HOH HOH . C 3 HOH A 145 645 645 HOH HOH . C 3 HOH A 146 646 646 HOH HOH . C 3 HOH A 147 647 647 HOH HOH . C 3 HOH A 148 648 648 HOH HOH . C 3 HOH A 149 649 649 HOH HOH . C 3 HOH A 150 650 650 HOH HOH . C 3 HOH A 151 651 651 HOH HOH . C 3 HOH A 152 652 652 HOH HOH . C 3 HOH A 153 653 653 HOH HOH . C 3 HOH A 154 654 654 HOH HOH . C 3 HOH A 155 655 655 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 65.992 -19.385 -26.17 1 20.73 ? PB ADP 700 A 1 HETATM 2 O O1B ADP . . . B 2 65.568 -19.145 -24.781 1 19.79 ? O1B ADP 700 A 1 HETATM 3 O O2B ADP . . . B 2 65.54 -18.286 -27.171 1 20.21 ? O2B ADP 700 A 1 HETATM 4 O O3B ADP . . . B 2 67.506 -19.552 -26.3 1 20.37 ? O3B ADP 700 A 1 HETATM 5 P PA ADP . . . B 2 64.545 -21.35 -27.866 1 20.49 ? PA ADP 700 A 1 HETATM 6 O O1A ADP . . . B 2 63.181 -20.77 -27.88 1 20.62 ? O1A ADP 700 A 1 HETATM 7 O O2A ADP . . . B 2 65.305 -21.14 -29.098 1 20.84 ? O2A ADP 700 A 1 HETATM 8 O O3A ADP . . . B 2 65.453 -20.771 -26.621 1 20.45 ? O3A ADP 700 A 1 HETATM 9 O O5' ADP . . . B 2 64.493 -22.895 -27.532 1 21.55 ? O5' ADP 700 A 1 HETATM 10 C C5' ADP . . . B 2 65.321 -24.005 -27.593 1 22.41 ? C5' ADP 700 A 1 HETATM 11 C C4' ADP . . . B 2 64.887 -25.185 -28.158 1 23.02 ? C4' ADP 700 A 1 HETATM 12 O O4' ADP . . . B 2 64.186 -25.772 -27.133 1 22.81 ? O4' ADP 700 A 1 HETATM 13 C C3' ADP . . . B 2 63.754 -25.051 -29.174 1 23.59 ? C3' ADP 700 A 1 HETATM 14 O O3' ADP . . . B 2 64.155 -26.136 -29.978 1 24.34 ? O3' ADP 700 A 1 HETATM 15 C C2' ADP . . . B 2 62.491 -25.439 -28.672 1 23.44 ? C2' ADP 700 A 1 HETATM 16 O O2' ADP . . . B 2 61.671 -25.8 -29.798 1 24.71 ? O2' ADP 700 A 1 HETATM 17 C C1' ADP . . . B 2 62.892 -25.994 -27.225 1 23.06 ? C1' ADP 700 A 1 HETATM 18 N N9 ADP . . . B 2 62.051 -25.569 -26.208 1 22.29 ? N9 ADP 700 A 1 HETATM 19 C C8 ADP . . . B 2 62.14 -24.475 -25.402 1 22.18 ? C8 ADP 700 A 1 HETATM 20 N N7 ADP . . . B 2 61.22 -24.379 -24.548 1 21.89 ? N7 ADP 700 A 1 HETATM 21 C C5 ADP . . . B 2 60.443 -25.474 -24.77 1 22.16 ? C5 ADP 700 A 1 HETATM 22 C C6 ADP . . . B 2 59.225 -25.999 -24.138 1 22.01 ? C6 ADP 700 A 1 HETATM 23 N N6 ADP . . . B 2 58.651 -25.336 -23.106 1 21.97 ? N6 ADP 700 A 1 HETATM 24 N N1 ADP . . . B 2 58.647 -27.202 -24.615 1 22.41 ? N1 ADP 700 A 1 HETATM 25 C C2 ADP . . . B 2 59.243 -27.883 -25.674 1 21.93 ? C2 ADP 700 A 1 HETATM 26 N N3 ADP . . . B 2 60.388 -27.46 -26.317 1 22.82 ? N3 ADP 700 A 1 HETATM 27 C C4 ADP . . . B 2 60.952 -26.256 -25.821 1 22.15 ? C4 ADP 700 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1038 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 27 #