data_1IND # _model_server_result.job_id 6GejjqxQtZtqww495quNGg _model_server_result.datetime_utc '2024-11-05 00:30:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ind # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 1IND # _exptl.entry_id 1IND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.523 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1-[(BIS-CARBOXYMETHYL-AMINO)-METHYL]-2-{4-[3-(2-HYDROXY-ETHYL)-THIOUREIDO]-PHENY}-ETHYL)-CARBOXYMETHYL-AMINO]-ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 136.2 _cell.angle_gamma 90 _cell.entry_id 1IND _cell.length_a 99.3 _cell.length_b 84.6 _cell.length_c 76.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IND _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 L CYS 22 1_555 A SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 137 L CYS 137 1_555 A SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 140 H CYS 140 1_555 B SG CYS 195 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc1 B NE2 HIS 99 H HIS 99 1_555 C IN IN . H IN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 C IN IN . H IN 800 1_555 D O1 EOT . H EOT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc3 C IN IN . H IN 800 1_555 D O5 EOT . H EOT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 C IN IN . H IN 800 1_555 D O3 EOT . H EOT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc5 C IN IN . H IN 800 1_555 D N2 EOT . H EOT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc6 C IN IN . H IN 800 1_555 D N1 EOT . H EOT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc7 C IN IN . H IN 800 1_555 D O7 EOT . H EOT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C20 H28 N4 O9 S' _chem_comp.formula_weight 500.523 _chem_comp.id EOT _chem_comp.mon_nstd_flag . _chem_comp.name '[(1-[(BIS-CARBOXYMETHYL-AMINO)-METHYL]-2-{4-[3-(2-HYDROXY-ETHYL)-THIOUREIDO]-PHENY}-ETHYL)-CARBOXYMETHYL-AMINO]-ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 EOT sing 83 n y C15 C14 EOT doub 84 n y C15 N3 EOT sing 85 n n C16 C17 EOT doub 86 n y C16 H16 EOT sing 87 n n C17 C12 EOT sing 88 n y C17 H17 EOT sing 89 n n C12 C13 EOT doub 90 n y C12 C11 EOT sing 91 n n C13 C14 EOT sing 92 n y C13 H13 EOT sing 93 n n C14 H14 EOT sing 94 n n N3 C18 EOT sing 95 n n N3 HN3 EOT sing 96 n n C18 S1 EOT doub 97 n n C18 N4 EOT sing 98 n n N4 C19 EOT sing 99 n n N4 HN4 EOT sing 100 n n C19 C20 EOT sing 101 n n C19 H191 EOT sing 102 n n C19 H192 EOT sing 103 n n C20 O9 EOT sing 104 n n C20 H201 EOT sing 105 n n C20 H202 EOT sing 106 n n O9 HO9 EOT sing 107 n n C11 C1 EOT sing 108 n n C11 H111 EOT sing 109 n n C11 H112 EOT sing 110 n n C1 C2 EOT sing 111 n n C1 N1 EOT sing 112 n n C1 H1 EOT sing 113 n n C2 N2 EOT sing 114 n n C2 H21 EOT sing 115 n n C2 H22 EOT sing 116 n n N1 C9 EOT sing 117 n n N1 C7 EOT sing 118 n n C9 C10 EOT sing 119 n n C9 H91 EOT sing 120 n n C9 H92 EOT sing 121 n n C10 O7 EOT doub 122 n n C10 O8 EOT sing 123 n n O8 HO8 EOT sing 124 n n C7 C8 EOT sing 125 n n C7 H71 EOT sing 126 n n C7 H72 EOT sing 127 n n C8 O5 EOT doub 128 n n C8 O6 EOT sing 129 n n O6 HO6 EOT sing 130 n n N2 C5 EOT sing 131 n n N2 C3 EOT sing 132 n n C5 C6 EOT sing 133 n n C5 H51 EOT sing 134 n n C5 H52 EOT sing 135 n n C6 O3 EOT doub 136 n n C6 O4 EOT sing 137 n n O4 HO4 EOT sing 138 n n C3 C4 EOT sing 139 n n C3 H31 EOT sing 140 n n C3 H32 EOT sing 141 n n C4 O1 EOT doub 142 n n C4 O2 EOT sing 143 n n O2 HO2 EOT sing 144 n n # _atom_sites.entry_id 1IND _atom_sites.fract_transf_matrix[1][1] 0.01007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010501 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IN H 1 800 800 IN IN . D 4 EOT H 1 801 801 EOT EOT . E 5 HOH L 1 301 301 HOH HOH . E 5 HOH L 2 304 304 HOH HOH . E 5 HOH L 3 306 306 HOH HOH . E 5 HOH L 4 308 308 HOH HOH . E 5 HOH L 5 309 309 HOH HOH . E 5 HOH L 6 310 310 HOH HOH . E 5 HOH L 7 311 311 HOH HOH . E 5 HOH L 8 312 312 HOH HOH . E 5 HOH L 9 315 315 HOH HOH . E 5 HOH L 10 316 316 HOH HOH . E 5 HOH L 11 319 319 HOH HOH . E 5 HOH L 12 320 320 HOH HOH . E 5 HOH L 13 322 322 HOH HOH . E 5 HOH L 14 325 325 HOH HOH . E 5 HOH L 15 329 329 HOH HOH . E 5 HOH L 16 330 330 HOH HOH . E 5 HOH L 17 332 332 HOH HOH . E 5 HOH L 18 333 333 HOH HOH . E 5 HOH L 19 336 336 HOH HOH . E 5 HOH L 20 339 339 HOH HOH . E 5 HOH L 21 341 341 HOH HOH . E 5 HOH L 22 343 343 HOH HOH . E 5 HOH L 23 345 345 HOH HOH . E 5 HOH L 24 347 347 HOH HOH . E 5 HOH L 25 353 353 HOH HOH . E 5 HOH L 26 354 354 HOH HOH . E 5 HOH L 27 356 356 HOH HOH . E 5 HOH L 28 357 357 HOH HOH . E 5 HOH L 29 359 359 HOH HOH . E 5 HOH L 30 363 363 HOH HOH . E 5 HOH L 31 364 364 HOH HOH . E 5 HOH L 32 366 366 HOH HOH . E 5 HOH L 33 370 370 HOH HOH . E 5 HOH L 34 371 371 HOH HOH . E 5 HOH L 35 376 376 HOH HOH . E 5 HOH L 36 377 377 HOH HOH . E 5 HOH L 37 380 380 HOH HOH . E 5 HOH L 38 382 382 HOH HOH . E 5 HOH L 39 383 383 HOH HOH . E 5 HOH L 40 384 384 HOH HOH . E 5 HOH L 41 385 385 HOH HOH . E 5 HOH L 42 387 387 HOH HOH . E 5 HOH L 43 390 390 HOH HOH . E 5 HOH L 44 394 394 HOH HOH . E 5 HOH L 45 395 395 HOH HOH . E 5 HOH L 46 396 396 HOH HOH . E 5 HOH L 47 398 398 HOH HOH . E 5 HOH L 48 403 403 HOH HOH . E 5 HOH L 49 405 405 HOH HOH . E 5 HOH L 50 407 407 HOH HOH . E 5 HOH L 51 408 408 HOH HOH . E 5 HOH L 52 409 409 HOH HOH . E 5 HOH L 53 410 410 HOH HOH . E 5 HOH L 54 411 411 HOH HOH . E 5 HOH L 55 413 413 HOH HOH . E 5 HOH L 56 414 414 HOH HOH . E 5 HOH L 57 415 415 HOH HOH . E 5 HOH L 58 417 417 HOH HOH . E 5 HOH L 59 419 419 HOH HOH . E 5 HOH L 60 421 421 HOH HOH . E 5 HOH L 61 428 428 HOH HOH . E 5 HOH L 62 429 429 HOH HOH . E 5 HOH L 63 430 430 HOH HOH . E 5 HOH L 64 433 433 HOH HOH . E 5 HOH L 65 434 434 HOH HOH . E 5 HOH L 66 436 436 HOH HOH . E 5 HOH L 67 437 437 HOH HOH . E 5 HOH L 68 441 441 HOH HOH . E 5 HOH L 69 445 445 HOH HOH . F 5 HOH H 1 302 302 HOH HOH . F 5 HOH H 2 303 303 HOH HOH . F 5 HOH H 3 305 305 HOH HOH . F 5 HOH H 4 307 307 HOH HOH . F 5 HOH H 5 313 313 HOH HOH . F 5 HOH H 6 314 314 HOH HOH . F 5 HOH H 7 317 317 HOH HOH . F 5 HOH H 8 318 318 HOH HOH . F 5 HOH H 9 321 321 HOH HOH . F 5 HOH H 10 323 323 HOH HOH . F 5 HOH H 11 324 324 HOH HOH . F 5 HOH H 12 326 326 HOH HOH . F 5 HOH H 13 327 327 HOH HOH . F 5 HOH H 14 328 328 HOH HOH . F 5 HOH H 15 331 331 HOH HOH . F 5 HOH H 16 334 334 HOH HOH . F 5 HOH H 17 335 335 HOH HOH . F 5 HOH H 18 337 337 HOH HOH . F 5 HOH H 19 338 338 HOH HOH . F 5 HOH H 20 340 340 HOH HOH . F 5 HOH H 21 342 342 HOH HOH . F 5 HOH H 22 344 344 HOH HOH . F 5 HOH H 23 346 346 HOH HOH . F 5 HOH H 24 348 348 HOH HOH . F 5 HOH H 25 349 349 HOH HOH . F 5 HOH H 26 350 350 HOH HOH . F 5 HOH H 27 351 351 HOH HOH . F 5 HOH H 28 352 352 HOH HOH . F 5 HOH H 29 355 355 HOH HOH . F 5 HOH H 30 358 358 HOH HOH . F 5 HOH H 31 360 360 HOH HOH . F 5 HOH H 32 361 361 HOH HOH . F 5 HOH H 33 362 362 HOH HOH . F 5 HOH H 34 365 365 HOH HOH . F 5 HOH H 35 367 367 HOH HOH . F 5 HOH H 36 368 368 HOH HOH . F 5 HOH H 37 369 369 HOH HOH . F 5 HOH H 38 372 372 HOH HOH . F 5 HOH H 39 373 373 HOH HOH . F 5 HOH H 40 374 374 HOH HOH . F 5 HOH H 41 375 375 HOH HOH . F 5 HOH H 42 378 378 HOH HOH . F 5 HOH H 43 379 379 HOH HOH . F 5 HOH H 44 381 381 HOH HOH . F 5 HOH H 45 386 386 HOH HOH . F 5 HOH H 46 388 388 HOH HOH . F 5 HOH H 47 389 389 HOH HOH . F 5 HOH H 48 391 391 HOH HOH . F 5 HOH H 49 392 392 HOH HOH . F 5 HOH H 50 393 393 HOH HOH . F 5 HOH H 51 397 397 HOH HOH . F 5 HOH H 52 399 399 HOH HOH . F 5 HOH H 53 400 400 HOH HOH . F 5 HOH H 54 401 401 HOH HOH . F 5 HOH H 55 402 402 HOH HOH . F 5 HOH H 56 404 404 HOH HOH . F 5 HOH H 57 406 406 HOH HOH . F 5 HOH H 58 412 412 HOH HOH . F 5 HOH H 59 416 416 HOH HOH . F 5 HOH H 60 418 418 HOH HOH . F 5 HOH H 61 420 420 HOH HOH . F 5 HOH H 62 422 422 HOH HOH . F 5 HOH H 63 423 423 HOH HOH . F 5 HOH H 64 424 424 HOH HOH . F 5 HOH H 65 425 425 HOH HOH . F 5 HOH H 66 426 426 HOH HOH . F 5 HOH H 67 427 427 HOH HOH . F 5 HOH H 68 431 431 HOH HOH . F 5 HOH H 69 432 432 HOH HOH . F 5 HOH H 70 435 435 HOH HOH . F 5 HOH H 71 438 438 HOH HOH . F 5 HOH H 72 439 439 HOH HOH . F 5 HOH H 73 440 440 HOH HOH . F 5 HOH H 74 442 442 HOH HOH . F 5 HOH H 75 443 443 HOH HOH . F 5 HOH H 76 444 444 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 EOT . . . D 4 61.618 1.339 37.421 1 11.69 ? C15 EOT 801 H 1 HETATM 2 C C16 EOT . . . D 4 60.997 2.435 38.031 1 8.51 ? C16 EOT 801 H 1 HETATM 3 C C17 EOT . . . D 4 59.918 2.266 38.894 1 6.82 ? C17 EOT 801 H 1 HETATM 4 C C12 EOT . . . D 4 59.447 0.983 39.162 1 8.12 ? C12 EOT 801 H 1 HETATM 5 C C13 EOT . . . D 4 60.061 -0.108 38.56 1 8.28 ? C13 EOT 801 H 1 HETATM 6 C C14 EOT . . . D 4 61.132 0.068 37.696 1 9.28 ? C14 EOT 801 H 1 HETATM 7 N N3 EOT . . . D 4 62.652 1.438 36.575 1 20.43 ? N3 EOT 801 H 1 HETATM 8 C C18 EOT . . . D 4 63.805 2.052 36.862 1 28.87 ? C18 EOT 801 H 1 HETATM 9 S S1 EOT . . . D 4 64.155 2.672 38.377 1 31.09 ? S1 EOT 801 H 1 HETATM 10 N N4 EOT . . . D 4 64.688 2.143 35.878 1 30.39 ? N4 EOT 801 H 1 HETATM 11 C C19 EOT . . . D 4 65.965 2.844 36.055 1 34.09 ? C19 EOT 801 H 1 HETATM 12 C C20 EOT . . . D 4 66.353 3.529 34.739 1 34.73 ? C20 EOT 801 H 1 HETATM 13 O O9 EOT . . . D 4 67.608 4.168 34.919 1 36.44 ? O9 EOT 801 H 1 HETATM 14 C C11 EOT . . . D 4 58.303 0.779 40.073 1 8.43 ? C11 EOT 801 H 1 HETATM 15 C C1 EOT . . . D 4 56.902 1.044 39.494 1 13.15 ? C1 EOT 801 H 1 HETATM 16 C C2 EOT . . . D 4 56.487 -0.122 38.549 1 13.21 ? C2 EOT 801 H 1 HETATM 17 N N1 EOT . . . D 4 55.885 1.173 40.568 1 17.44 ? N1 EOT 801 H 1 HETATM 18 C C9 EOT . . . D 4 55.911 2.472 41.266 1 20.07 ? C9 EOT 801 H 1 HETATM 19 C C10 EOT . . . D 4 55.46 3.614 40.365 1 22.29 ? C10 EOT 801 H 1 HETATM 20 O O7 EOT . . . D 4 54.506 3.288 39.471 1 21.7 ? O7 EOT 801 H 1 HETATM 21 O O8 EOT . . . D 4 55.987 4.72 40.426 1 23.48 ? O8 EOT 801 H 1 HETATM 22 C C7 EOT . . . D 4 55.917 0.02 41.46 1 15 ? C7 EOT 801 H 1 HETATM 23 C C8 EOT . . . D 4 54.678 0.035 42.343 1 12.13 ? C8 EOT 801 H 1 HETATM 24 O O5 EOT . . . D 4 53.6 0.614 41.773 1 14.13 ? O5 EOT 801 H 1 HETATM 25 O O6 EOT . . . D 4 54.711 -0.388 43.497 1 10.65 ? O6 EOT 801 H 1 HETATM 26 N N2 EOT . . . D 4 55.152 0.011 37.94 1 14.87 ? N2 EOT 801 H 1 HETATM 27 C C5 EOT . . . D 4 54.675 -1.353 37.603 1 13.94 ? C5 EOT 801 H 1 HETATM 28 C C6 EOT . . . D 4 53.318 -1.707 38.225 1 14.75 ? C6 EOT 801 H 1 HETATM 29 O O3 EOT . . . D 4 52.978 -1.016 39.324 1 18.5 ? O3 EOT 801 H 1 HETATM 30 O O4 EOT . . . D 4 52.61 -2.597 37.754 1 14.71 ? O4 EOT 801 H 1 HETATM 31 C C3 EOT . . . D 4 55.146 0.873 36.733 1 14.8 ? C3 EOT 801 H 1 HETATM 32 C C4 EOT . . . D 4 53.734 1.306 36.36 1 16.37 ? C4 EOT 801 H 1 HETATM 33 O O1 EOT . . . D 4 52.847 1.222 37.374 1 16.12 ? O1 EOT 801 H 1 HETATM 34 O O2 EOT . . . D 4 53.435 1.662 35.219 1 14.96 ? O2 EOT 801 H 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #