data_1INF # _model_server_result.job_id GzgmNLzMWgxujfdNSbn54g _model_server_result.datetime_utc '2025-02-17 19:18:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1inf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":467}' # _entry.id 1INF # _exptl.entry_id 1INF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1INF _cell.length_a 124.25 _cell.length_b 124.25 _cell.length_c 71.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1INF _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 124.25 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 62.125 -62.125 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 62.125 62.125 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 87 1_555 A SG CYS 344 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 46 A CYS 122 1_555 A SG CYS 51 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 106 A CYS 182 1_555 A SG CYS 153 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 155 A CYS 231 1_555 A SG CYS 160 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 201 A CYS 277 1_555 A SG CYS 215 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 203 A CYS 279 1_555 A SG CYS 213 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 A SG CYS 242 A CYS 318 1_555 A SG CYS 261 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 A SG CYS 348 A CYS 424 1_555 A SG CYS 371 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A ND2 ASN 208 A ASN 284 1_555 B C1 NAG . A NAG 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? metalc ? metalc1 A OE1 GLU 92 A GLU 168 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc2 A OE1 GLU 92 A GLU 168 2_655 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc3 A OE1 GLU 92 A GLU 168 4_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc4 A OE1 GLU 92 A GLU 168 3_545 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc5 A O ASP 217 A ASP 293 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc6 A O THR 221 A THR 297 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc7 A OD2 ASP 248 A ASP 324 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc8 A O GLY 270 A GLY 346 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc9 C CA CA . A CA 500 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? metalc ? metalc10 C CA CA . A CA 500 1_555 F O HOH . A HOH 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc11 D CA CA . A CA 501 1_555 F O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? metalc ? metalc12 D CA CA . A CA 501 1_555 F O HOH . A HOH 536 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? metalc ? metalc13 D CA CA . A CA 501 1_555 F O HOH . A HOH 536 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? metalc ? metalc14 D CA CA . A CA 501 1_555 F O HOH . A HOH 536 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1INF _atom_sites.fract_transf_matrix[1][1] 0.008048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 467 467 NAG NAG . C 3 CA A 1 500 500 CA CA . D 3 CA A 1 501 501 CA CA . E 4 ST4 A 1 471 471 ST4 ST4 . F 5 HOH A 1 502 502 HOH HOH . F 5 HOH A 2 503 503 HOH HOH . F 5 HOH A 3 504 504 HOH HOH . F 5 HOH A 4 505 505 HOH HOH . F 5 HOH A 5 506 506 HOH HOH . F 5 HOH A 6 507 507 HOH HOH . F 5 HOH A 7 508 508 HOH HOH . F 5 HOH A 8 509 509 HOH HOH . F 5 HOH A 9 510 510 HOH HOH . F 5 HOH A 10 511 511 HOH HOH . F 5 HOH A 11 512 512 HOH HOH . F 5 HOH A 12 513 513 HOH HOH . F 5 HOH A 13 514 514 HOH HOH . F 5 HOH A 14 515 515 HOH HOH . F 5 HOH A 15 516 516 HOH HOH . F 5 HOH A 16 517 517 HOH HOH . F 5 HOH A 17 518 518 HOH HOH . F 5 HOH A 18 519 519 HOH HOH . F 5 HOH A 19 520 520 HOH HOH . F 5 HOH A 20 521 521 HOH HOH . F 5 HOH A 21 522 522 HOH HOH . F 5 HOH A 22 523 523 HOH HOH . F 5 HOH A 23 524 524 HOH HOH . F 5 HOH A 24 525 525 HOH HOH . F 5 HOH A 25 526 526 HOH HOH . F 5 HOH A 26 527 527 HOH HOH . F 5 HOH A 27 528 528 HOH HOH . F 5 HOH A 28 529 529 HOH HOH . F 5 HOH A 29 530 530 HOH HOH . F 5 HOH A 30 531 531 HOH HOH . F 5 HOH A 31 532 532 HOH HOH . F 5 HOH A 32 533 533 HOH HOH . F 5 HOH A 33 534 534 HOH HOH . F 5 HOH A 34 535 535 HOH HOH . F 5 HOH A 35 536 536 HOH HOH . F 5 HOH A 36 537 537 HOH HOH . F 5 HOH A 37 538 538 HOH HOH . F 5 HOH A 38 539 539 HOH HOH . F 5 HOH A 39 540 540 HOH HOH . F 5 HOH A 40 541 541 HOH HOH . F 5 HOH A 41 542 542 HOH HOH . F 5 HOH A 42 543 543 HOH HOH . F 5 HOH A 43 544 544 HOH HOH . F 5 HOH A 44 545 545 HOH HOH . F 5 HOH A 45 546 546 HOH HOH . F 5 HOH A 46 547 547 HOH HOH . F 5 HOH A 47 548 548 HOH HOH . F 5 HOH A 48 549 549 HOH HOH . F 5 HOH A 49 550 550 HOH HOH . F 5 HOH A 50 551 551 HOH HOH . F 5 HOH A 51 552 552 HOH HOH . F 5 HOH A 52 553 553 HOH HOH . F 5 HOH A 53 554 554 HOH HOH . F 5 HOH A 54 555 555 HOH HOH . F 5 HOH A 55 556 556 HOH HOH . F 5 HOH A 56 557 557 HOH HOH . F 5 HOH A 57 558 558 HOH HOH . F 5 HOH A 58 559 559 HOH HOH . F 5 HOH A 59 560 560 HOH HOH . F 5 HOH A 60 561 561 HOH HOH . F 5 HOH A 61 562 562 HOH HOH . F 5 HOH A 62 563 563 HOH HOH . F 5 HOH A 63 564 564 HOH HOH . F 5 HOH A 64 565 565 HOH HOH . F 5 HOH A 65 566 566 HOH HOH . F 5 HOH A 66 567 567 HOH HOH . F 5 HOH A 67 568 568 HOH HOH . F 5 HOH A 68 569 569 HOH HOH . F 5 HOH A 69 570 570 HOH HOH . F 5 HOH A 70 571 571 HOH HOH . F 5 HOH A 71 572 572 HOH HOH . F 5 HOH A 72 573 573 HOH HOH . F 5 HOH A 73 574 574 HOH HOH . F 5 HOH A 74 575 575 HOH HOH . F 5 HOH A 75 576 576 HOH HOH . F 5 HOH A 76 577 577 HOH HOH . F 5 HOH A 77 578 578 HOH HOH . F 5 HOH A 78 579 579 HOH HOH . F 5 HOH A 79 580 580 HOH HOH . F 5 HOH A 80 581 581 HOH HOH . F 5 HOH A 81 582 582 HOH HOH . F 5 HOH A 82 583 583 HOH HOH . F 5 HOH A 83 584 584 HOH HOH . F 5 HOH A 84 585 585 HOH HOH . F 5 HOH A 85 586 586 HOH HOH . F 5 HOH A 86 587 587 HOH HOH . F 5 HOH A 87 588 588 HOH HOH . F 5 HOH A 88 589 589 HOH HOH . F 5 HOH A 89 590 590 HOH HOH . F 5 HOH A 90 591 591 HOH HOH . F 5 HOH A 91 592 592 HOH HOH . F 5 HOH A 92 593 593 HOH HOH . F 5 HOH A 93 594 594 HOH HOH . F 5 HOH A 94 595 595 HOH HOH . F 5 HOH A 95 596 596 HOH HOH . F 5 HOH A 96 597 597 HOH HOH . F 5 HOH A 97 598 598 HOH HOH . F 5 HOH A 98 599 599 HOH HOH . F 5 HOH A 99 600 600 HOH HOH . F 5 HOH A 100 601 601 HOH HOH . F 5 HOH A 101 602 602 HOH HOH . F 5 HOH A 102 603 603 HOH HOH . F 5 HOH A 103 604 604 HOH HOH . F 5 HOH A 104 605 605 HOH HOH . F 5 HOH A 105 606 606 HOH HOH . F 5 HOH A 106 607 607 HOH HOH . F 5 HOH A 107 608 608 HOH HOH . F 5 HOH A 108 609 609 HOH HOH . F 5 HOH A 109 610 610 HOH HOH . F 5 HOH A 110 611 611 HOH HOH . F 5 HOH A 111 612 612 HOH HOH . F 5 HOH A 112 613 613 HOH HOH . F 5 HOH A 113 614 614 HOH HOH . F 5 HOH A 114 615 615 HOH HOH . F 5 HOH A 115 616 616 HOH HOH . F 5 HOH A 116 617 617 HOH HOH . F 5 HOH A 117 618 618 HOH HOH . F 5 HOH A 118 619 619 HOH HOH . F 5 HOH A 119 620 620 HOH HOH . F 5 HOH A 120 621 621 HOH HOH . F 5 HOH A 121 622 622 HOH HOH . F 5 HOH A 122 623 623 HOH HOH . F 5 HOH A 123 624 624 HOH HOH . F 5 HOH A 124 625 625 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 40.48 -18.212 32.52 1 28.81 ? C1 NAG 467 A 1 HETATM 2 C C2 NAG . . . B 2 41.024 -19.612 32.618 1 30.76 ? C2 NAG 467 A 1 HETATM 3 C C3 NAG . . . B 2 42.562 -19.725 32.475 1 34.19 ? C3 NAG 467 A 1 HETATM 4 C C4 NAG . . . B 2 43.243 -18.343 32.204 1 37.28 ? C4 NAG 467 A 1 HETATM 5 C C5 NAG . . . B 2 42.449 -17.318 31.337 1 33.92 ? C5 NAG 467 A 1 HETATM 6 C C6 NAG . . . B 2 42.88 -17.472 29.903 1 32.9 ? C6 NAG 467 A 1 HETATM 7 C C7 NAG . . . B 2 40.827 -21.395 34.187 1 26.53 ? C7 NAG 467 A 1 HETATM 8 C C8 NAG . . . B 2 40.533 -21.829 35.605 1 23.88 ? C8 NAG 467 A 1 HETATM 9 N N2 NAG . . . B 2 40.743 -20.093 33.947 1 30.81 ? N2 NAG 467 A 1 HETATM 10 O O3 NAG . . . B 2 42.881 -20.592 31.454 1 33.57 ? O3 NAG 467 A 1 HETATM 11 O O4 NAG . . . B 2 43.419 -17.688 33.459 1 45.94 ? O4 NAG 467 A 1 HETATM 12 O O5 NAG . . . B 2 40.992 -17.539 31.381 1 30.32 ? O5 NAG 467 A 1 HETATM 13 O O6 NAG . . . B 2 42.03 -16.634 29.133 1 35.71 ? O6 NAG 467 A 1 HETATM 14 O O7 NAG . . . B 2 41.099 -22.206 33.306 1 27.5 ? O7 NAG 467 A 1 HETATM 15 H H1 NAG . . . B 2 40.823 -17.57 33.35 1 15 ? H1 NAG 467 A 1 HETATM 16 H H2 NAG . . . B 2 40.513 -20.227 31.855 1 15 ? H2 NAG 467 A 1 HETATM 17 H H3 NAG . . . B 2 43.065 -20.132 33.364 1 15 ? H3 NAG 467 A 1 HETATM 18 H H4 NAG . . . B 2 44.249 -18.52 31.783 1 15 ? H4 NAG 467 A 1 HETATM 19 H H5 NAG . . . B 2 42.645 -16.282 31.662 1 15 ? H5 NAG 467 A 1 HETATM 20 H H61 NAG . . . B 2 42.795 -18.523 29.582 1 15 ? H61 NAG 467 A 1 HETATM 21 H H62 NAG . . . B 2 43.928 -17.152 29.78 1 15 ? H62 NAG 467 A 1 HETATM 22 H H81 NAG . . . B 2 40.321 -20.969 36.259 1 15 ? H81 NAG 467 A 1 HETATM 23 H H82 NAG . . . B 2 41.391 -22.358 36.031 1 15 ? H82 NAG 467 A 1 HETATM 24 H H83 NAG . . . B 2 39.675 -22.515 35.628 1 15 ? H83 NAG 467 A 1 HETATM 25 H HN2 NAG . . . B 2 40.516 -19.454 34.655 1 15 ? HN2 NAG 467 A 1 HETATM 26 H HO3 NAG . . . B 2 42.463 -21.443 31.671 1 15 ? HO3 NAG 467 A 1 HETATM 27 H HO4 NAG . . . B 2 42.601 -17.765 33.946 1 15 ? HO4 NAG 467 A 1 HETATM 28 H HO6 NAG . . . B 2 41.131 -16.776 29.457 1 15 ? HO6 NAG 467 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #