data_1INV # _model_server_result.job_id 4EisiQJIwh3-IC4YGi6zpg _model_server_result.datetime_utc '2024-10-18 19:30:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1inv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 1INV # _exptl.entry_id 1INV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.241 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R)-4-acetamido-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1INV _cell.length_a 124.73 _cell.length_b 124.73 _cell.length_c 71.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1INV _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 124.73 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 62.365 -62.365 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 62.365 62.365 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 87 1_555 A SG CYS 344 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 46 A CYS 122 1_555 A SG CYS 51 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 106 A CYS 182 1_555 A SG CYS 153 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 A SG CYS 155 A CYS 231 1_555 A SG CYS 160 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 201 A CYS 277 1_555 A SG CYS 215 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 203 A CYS 279 1_555 A SG CYS 213 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 A SG CYS 242 A CYS 318 1_555 A SG CYS 261 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf8 A SG CYS 348 A CYS 424 1_555 A SG CYS 371 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 208 A ASN 284 1_555 B C1 NAG . A NAG 467 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OE1 GLU 92 A GLU 168 1_555 D CA CA . A CA 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A OE1 GLU 92 A GLU 168 3_545 D CA CA . A CA 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc3 A OE1 GLU 92 A GLU 168 2_655 D CA CA . A CA 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 A OE1 GLU 92 A GLU 168 4_555 D CA CA . A CA 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 A O ASP 217 A ASP 293 1_555 C CA CA . A CA 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 A O THR 221 A THR 297 1_555 C CA CA . A CA 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc7 A OD2 ASP 248 A ASP 324 1_555 C CA CA . A CA 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc8 A O GLY 270 A GLY 346 1_555 C CA CA . A CA 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc9 C CA CA . A CA 468 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc10 C CA CA . A CA 468 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C10 H20 N O9 P' _chem_comp.formula_weight 329.241 _chem_comp.id EQP _chem_comp.mon_nstd_flag . _chem_comp.name (1R)-4-acetamido-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1INV _atom_sites.fract_transf_matrix[1][1] 0.008017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 467 284 NAG NAG A C 3 CA A 1 468 467 CA CA . D 3 CA A 1 469 468 CA CA . E 4 EQP A 1 500 500 EQP EQP . F 5 HOH A 1 501 501 HOH HOH . F 5 HOH A 2 502 502 HOH HOH . F 5 HOH A 3 503 503 HOH HOH . F 5 HOH A 4 504 504 HOH HOH . F 5 HOH A 5 505 505 HOH HOH . F 5 HOH A 6 506 506 HOH HOH . F 5 HOH A 7 507 507 HOH HOH . F 5 HOH A 8 508 508 HOH HOH . F 5 HOH A 9 509 509 HOH HOH . F 5 HOH A 10 510 510 HOH HOH . F 5 HOH A 11 511 511 HOH HOH . F 5 HOH A 12 512 512 HOH HOH . F 5 HOH A 13 513 513 HOH HOH . F 5 HOH A 14 514 514 HOH HOH . F 5 HOH A 15 515 515 HOH HOH . F 5 HOH A 16 516 516 HOH HOH . F 5 HOH A 17 517 517 HOH HOH . F 5 HOH A 18 518 518 HOH HOH . F 5 HOH A 19 519 519 HOH HOH . F 5 HOH A 20 520 520 HOH HOH . F 5 HOH A 21 521 521 HOH HOH . F 5 HOH A 22 522 522 HOH HOH . F 5 HOH A 23 523 523 HOH HOH . F 5 HOH A 24 524 524 HOH HOH . F 5 HOH A 25 525 525 HOH HOH . F 5 HOH A 26 526 526 HOH HOH . F 5 HOH A 27 527 527 HOH HOH . F 5 HOH A 28 528 528 HOH HOH . F 5 HOH A 29 529 529 HOH HOH . F 5 HOH A 30 530 530 HOH HOH . F 5 HOH A 31 531 531 HOH HOH . F 5 HOH A 32 532 532 HOH HOH . F 5 HOH A 33 533 533 HOH HOH . F 5 HOH A 34 534 534 HOH HOH . F 5 HOH A 35 535 535 HOH HOH . F 5 HOH A 36 536 536 HOH HOH . F 5 HOH A 37 537 537 HOH HOH . F 5 HOH A 38 538 538 HOH HOH . F 5 HOH A 39 539 539 HOH HOH . F 5 HOH A 40 540 540 HOH HOH . F 5 HOH A 41 541 541 HOH HOH . F 5 HOH A 42 542 542 HOH HOH . F 5 HOH A 43 543 543 HOH HOH . F 5 HOH A 44 544 544 HOH HOH . F 5 HOH A 45 545 545 HOH HOH . F 5 HOH A 46 546 546 HOH HOH . F 5 HOH A 47 547 547 HOH HOH . F 5 HOH A 48 548 548 HOH HOH . F 5 HOH A 49 549 549 HOH HOH . F 5 HOH A 50 550 550 HOH HOH . F 5 HOH A 51 551 551 HOH HOH . F 5 HOH A 52 552 552 HOH HOH . F 5 HOH A 53 553 553 HOH HOH . F 5 HOH A 54 554 554 HOH HOH . F 5 HOH A 55 555 555 HOH HOH . F 5 HOH A 56 556 556 HOH HOH . F 5 HOH A 57 557 557 HOH HOH . F 5 HOH A 58 558 558 HOH HOH . F 5 HOH A 59 559 559 HOH HOH . F 5 HOH A 60 560 560 HOH HOH . F 5 HOH A 61 561 561 HOH HOH . F 5 HOH A 62 562 562 HOH HOH . F 5 HOH A 63 563 563 HOH HOH . F 5 HOH A 64 564 564 HOH HOH . F 5 HOH A 65 565 565 HOH HOH . F 5 HOH A 66 566 566 HOH HOH . F 5 HOH A 67 567 567 HOH HOH . F 5 HOH A 68 568 568 HOH HOH . F 5 HOH A 69 569 569 HOH HOH . F 5 HOH A 70 570 570 HOH HOH . F 5 HOH A 71 571 571 HOH HOH . F 5 HOH A 72 572 572 HOH HOH . F 5 HOH A 73 573 573 HOH HOH . F 5 HOH A 74 574 574 HOH HOH . F 5 HOH A 75 575 575 HOH HOH . F 5 HOH A 76 576 576 HOH HOH . F 5 HOH A 77 577 577 HOH HOH . F 5 HOH A 78 578 578 HOH HOH . F 5 HOH A 79 579 579 HOH HOH . F 5 HOH A 80 580 580 HOH HOH . F 5 HOH A 81 581 581 HOH HOH . F 5 HOH A 82 582 582 HOH HOH . F 5 HOH A 83 583 583 HOH HOH . F 5 HOH A 84 584 584 HOH HOH . F 5 HOH A 85 585 585 HOH HOH . F 5 HOH A 86 586 586 HOH HOH . F 5 HOH A 87 587 587 HOH HOH . F 5 HOH A 88 588 588 HOH HOH . F 5 HOH A 89 589 589 HOH HOH . F 5 HOH A 90 590 590 HOH HOH . F 5 HOH A 91 591 591 HOH HOH . F 5 HOH A 92 592 592 HOH HOH . F 5 HOH A 93 593 593 HOH HOH . F 5 HOH A 94 594 594 HOH HOH . F 5 HOH A 95 595 595 HOH HOH . F 5 HOH A 96 596 596 HOH HOH . F 5 HOH A 97 597 597 HOH HOH . F 5 HOH A 98 598 598 HOH HOH . F 5 HOH A 99 599 599 HOH HOH . F 5 HOH A 100 600 600 HOH HOH . F 5 HOH A 101 601 601 HOH HOH . F 5 HOH A 102 602 602 HOH HOH . F 5 HOH A 103 603 603 HOH HOH . F 5 HOH A 104 604 604 HOH HOH . F 5 HOH A 105 605 605 HOH HOH . F 5 HOH A 106 606 606 HOH HOH . F 5 HOH A 107 607 607 HOH HOH . F 5 HOH A 108 608 608 HOH HOH . F 5 HOH A 109 609 609 HOH HOH . F 5 HOH A 110 610 610 HOH HOH . F 5 HOH A 111 611 611 HOH HOH . F 5 HOH A 112 612 612 HOH HOH . F 5 HOH A 113 613 613 HOH HOH . F 5 HOH A 114 614 614 HOH HOH . F 5 HOH A 115 615 615 HOH HOH . F 5 HOH A 116 616 616 HOH HOH . F 5 HOH A 117 617 617 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 EQP . . . E 4 33.438 -13.959 67.187 0.92 5.13 ? P1 EQP 500 A 1 HETATM 2 C C2 EQP . . . E 4 33.225 -12.703 65.835 1 9.75 ? C2 EQP 500 A 1 HETATM 3 C C3 EQP . . . E 4 34.158 -11.515 65.931 1 4.82 ? C3 EQP 500 A 1 HETATM 4 C C4 EQP . . . E 4 33.884 -10.514 64.808 1 13.26 ? C4 EQP 500 A 1 HETATM 5 C C5 EQP . . . E 4 32.433 -10.183 64.731 1 19.08 ? C5 EQP 500 A 1 HETATM 6 C C6 EQP . . . E 4 31.609 -11.465 64.676 1 16.3 ? C6 EQP 500 A 1 HETATM 7 C C7 EQP . . . E 4 30.089 -11.393 64.64 1 16.72 ? C7 EQP 500 A 1 HETATM 8 C C8 EQP . . . E 4 29.378 -12.62 63.989 1 14.69 ? C8 EQP 500 A 1 HETATM 9 C C9 EQP . . . E 4 27.834 -12.483 64.08 1 4.83 ? C9 EQP 500 A 1 HETATM 10 C C10 EQP . . . E 4 31.635 -8.161 63.622 1 12.87 ? C10 EQP 500 A 1 HETATM 11 C C11 EQP . . . E 4 31.499 -7.392 62.321 1 4.83 ? C11 EQP 500 A 1 HETATM 12 N N5 EQP . . . E 4 32.219 -9.359 63.57 0.95 6.65 ? N5 EQP 500 A 1 HETATM 13 O O1P EQP . . . E 4 33.195 -13.316 68.5 1 29.3 ? O1P EQP 500 A 1 HETATM 14 O O2P EQP . . . E 4 32.47 -15.025 66.807 1 26.04 ? O2P EQP 500 A 1 HETATM 15 O O3P EQP . . . E 4 34.89 -14.265 67.166 1 13.12 ? O3P EQP 500 A 1 HETATM 16 O O4 EQP . . . E 4 34.569 -9.324 65.04 1 37.46 ? O4 EQP 500 A 1 HETATM 17 O O6 EQP . . . E 4 31.955 -12.206 65.822 1 22.5 ? O6 EQP 500 A 1 HETATM 18 O O7 EQP . . . E 4 29.603 -11.357 65.968 1 8.45 ? O7 EQP 500 A 1 HETATM 19 O O8 EQP . . . E 4 29.704 -12.688 62.641 1 29.41 ? O8 EQP 500 A 1 HETATM 20 O O9 EQP . . . E 4 27.298 -11.448 63.255 1 68.25 ? O9 EQP 500 A 1 HETATM 21 O O10 EQP . . . E 4 31.17 -7.687 64.651 1 32.76 ? O10 EQP 500 A 1 HETATM 22 H H2 EQP . . . E 4 33.407 -13.197 64.87 1 0 ? H2 EQP 500 A 1 HETATM 23 H H32 EQP . . . E 4 35.195 -11.869 65.848 1 0 ? H32 EQP 500 A 1 HETATM 24 H H31 EQP . . . E 4 34.003 -11.017 66.898 1 0 ? H31 EQP 500 A 1 HETATM 25 H H4 EQP . . . E 4 34.216 -10.952 63.856 1 0 ? H4 EQP 500 A 1 HETATM 26 H H5 EQP . . . E 4 32.134 -9.639 65.638 1 0 ? H5 EQP 500 A 1 HETATM 27 H H6 EQP . . . E 4 31.863 -12.045 63.778 1 0 ? H6 EQP 500 A 1 HETATM 28 H H7 EQP . . . E 4 29.784 -10.484 64.103 1 0 ? H7 EQP 500 A 1 HETATM 29 H H8 EQP . . . E 4 29.708 -13.536 64.499 1 0 ? H8 EQP 500 A 1 HETATM 30 H H92 EQP . . . E 4 27.575 -12.271 65.127 1 0 ? H92 EQP 500 A 1 HETATM 31 H H91 EQP . . . E 4 27.392 -13.442 63.777 1 0 ? H91 EQP 500 A 1 HETATM 32 H H111 EQP . . . E 4 30.544 -7.648 61.841 1 0 ? H111 EQP 500 A 1 HETATM 33 H H113 EQP . . . E 4 32.318 -7.662 61.64 1 0 ? H113 EQP 500 A 1 HETATM 34 H H112 EQP . . . E 4 31.512 -6.312 62.522 1 0 ? H112 EQP 500 A 1 HETATM 35 H HN5 EQP . . . E 4 32.517 -9.695 62.699 1 0 ? HN5 EQP 500 A 1 HETATM 36 H HOP3 EQP . . . E 4 35.014 -15.215 67.101 1 0 ? HOP3 EQP 500 A 1 HETATM 37 H HO4 EQP . . . E 4 34.276 -8.945 65.872 1 0 ? HO4 EQP 500 A 1 HETATM 38 H HO7 EQP . . . E 4 28.643 -11.357 65.956 1 0 ? HO7 EQP 500 A 1 HETATM 39 H HO8 EQP . . . E 4 28.898 -12.714 62.12 1 0 ? HO8 EQP 500 A 1 HETATM 40 H HO9 EQP . . . E 4 26.344 -11.419 63.36 1 0 ? HO9 EQP 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 40 #