data_1INW # _model_server_result.job_id 9XYKyFhhzk1s3bHAZ4wOQA _model_server_result.datetime_utc '2024-11-25 07:43:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1inw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":477}' # _entry.id 1INW # _exptl.entry_id 1INW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1INW _cell.length_a 122.08 _cell.length_b 141.67 _cell.length_c 141.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1INW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 200 NAG 2 n B NAG 2 B 2 NAG ? 200 NAG 2 n B MAN 3 B 3 MAN ? 200 MAN 2 n B MAN 4 B 4 MAN ? 200 MAN 2 n B MAN 5 B 5 MAN ? 200 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 92 1_555 A SG CYS 336 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 43 A CYS 124 1_555 A SG CYS 48 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf3 A SG CYS 94 A CYS 175 1_555 A SG CYS 112 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 102 A CYS 183 1_555 A SG CYS 149 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf5 A SG CYS 151 A CYS 232 1_555 A SG CYS 156 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 197 A CYS 278 1_555 A SG CYS 210 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 199 A CYS 280 1_555 A SG CYS 208 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf8 A SG CYS 237 A CYS 318 1_555 A SG CYS 256 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf9 A SG CYS 340 A CYS 421 1_555 A SG CYS 366 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 5 A ASN 86 1_555 C C1 NAG . A NAG 470 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A ND2 ASN 65 A ASN 146 1_555 D C1 NAG . A NAG 471 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.473 ? covale ? covale3 A ND2 ASN 119 A ASN 200 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 A ND2 ASN 153 A ASN 234 1_555 E C1 NAG . A NAG 477 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.467 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale7 B O3 MAN . B MAN 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale8 B O6 MAN . B MAN 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A O ASP 212 A ASP 293 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A O GLY 216 A GLY 297 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 A OD2 ASP 243 A ASP 324 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc4 A O GLY 264 A GLY 345 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 A O GLN 266 A GLN 347 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 302 n n C1 O1 NAG sing 303 n n C1 O5 NAG sing 304 n n C1 H1 NAG sing 305 n n C2 C3 NAG sing 306 n n C2 N2 NAG sing 307 n n C2 H2 NAG sing 308 n n C3 C4 NAG sing 309 n n C3 O3 NAG sing 310 n n C3 H3 NAG sing 311 n n C4 C5 NAG sing 312 n n C4 O4 NAG sing 313 n n C4 H4 NAG sing 314 n n C5 C6 NAG sing 315 n n C5 O5 NAG sing 316 n n C5 H5 NAG sing 317 n n C6 O6 NAG sing 318 n n C6 H61 NAG sing 319 n n C6 H62 NAG sing 320 n n C7 C8 NAG sing 321 n n C7 N2 NAG sing 322 n n C7 O7 NAG doub 323 n n C8 H81 NAG sing 324 n n C8 H82 NAG sing 325 n n C8 H83 NAG sing 326 n n N2 HN2 NAG sing 327 n n O1 HO1 NAG sing 328 n n O3 HO3 NAG sing 329 n n O4 HO4 NAG sing 330 n n O6 HO6 NAG sing 331 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1INW _atom_sites.fract_transf_matrix[1][1] 0.008191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 470 86 NAG NAG A D 3 NAG A 1 471 146 NAG NAG A E 3 NAG A 1 477 234 NAG NAG A F 4 AXP A 1 500 500 AXP AXP . G 5 CA A 1 501 470 CA CA . H 6 HOH A 1 502 501 HOH HOH . H 6 HOH A 2 503 502 HOH HOH . H 6 HOH A 3 504 503 HOH HOH . H 6 HOH A 4 505 504 HOH HOH . H 6 HOH A 5 506 505 HOH HOH . H 6 HOH A 6 507 506 HOH HOH . H 6 HOH A 7 508 507 HOH HOH . H 6 HOH A 8 509 508 HOH HOH . H 6 HOH A 9 510 509 HOH HOH . H 6 HOH A 10 511 510 HOH HOH . H 6 HOH A 11 512 511 HOH HOH . H 6 HOH A 12 513 512 HOH HOH . H 6 HOH A 13 514 513 HOH HOH . H 6 HOH A 14 515 514 HOH HOH . H 6 HOH A 15 516 515 HOH HOH . H 6 HOH A 16 517 516 HOH HOH . H 6 HOH A 17 518 517 HOH HOH . H 6 HOH A 18 519 518 HOH HOH . H 6 HOH A 19 520 519 HOH HOH . H 6 HOH A 20 521 520 HOH HOH . H 6 HOH A 21 522 521 HOH HOH . H 6 HOH A 22 523 522 HOH HOH . H 6 HOH A 23 524 523 HOH HOH . H 6 HOH A 24 525 524 HOH HOH . H 6 HOH A 25 526 525 HOH HOH . H 6 HOH A 26 527 526 HOH HOH . H 6 HOH A 27 528 527 HOH HOH . H 6 HOH A 28 529 528 HOH HOH . H 6 HOH A 29 530 529 HOH HOH . H 6 HOH A 30 531 530 HOH HOH . H 6 HOH A 31 532 531 HOH HOH . H 6 HOH A 32 533 532 HOH HOH . H 6 HOH A 33 534 533 HOH HOH . H 6 HOH A 34 535 534 HOH HOH . H 6 HOH A 35 536 535 HOH HOH . H 6 HOH A 36 537 536 HOH HOH . H 6 HOH A 37 538 537 HOH HOH . H 6 HOH A 38 539 538 HOH HOH . H 6 HOH A 39 540 539 HOH HOH . H 6 HOH A 40 541 540 HOH HOH . H 6 HOH A 41 542 541 HOH HOH . H 6 HOH A 42 543 542 HOH HOH . H 6 HOH A 43 544 543 HOH HOH . H 6 HOH A 44 545 544 HOH HOH . H 6 HOH A 45 546 545 HOH HOH . H 6 HOH A 46 547 546 HOH HOH . H 6 HOH A 47 548 547 HOH HOH . H 6 HOH A 48 549 548 HOH HOH . H 6 HOH A 49 550 549 HOH HOH . H 6 HOH A 50 551 550 HOH HOH . H 6 HOH A 51 552 551 HOH HOH . H 6 HOH A 52 553 552 HOH HOH . H 6 HOH A 53 554 553 HOH HOH . H 6 HOH A 54 555 554 HOH HOH . H 6 HOH A 55 556 555 HOH HOH . H 6 HOH A 56 557 556 HOH HOH . H 6 HOH A 57 558 557 HOH HOH . H 6 HOH A 58 559 558 HOH HOH . H 6 HOH A 59 560 559 HOH HOH . H 6 HOH A 60 561 560 HOH HOH . H 6 HOH A 61 562 561 HOH HOH . H 6 HOH A 62 563 562 HOH HOH . H 6 HOH A 63 564 563 HOH HOH . H 6 HOH A 64 565 564 HOH HOH . H 6 HOH A 65 566 565 HOH HOH . H 6 HOH A 66 567 566 HOH HOH . H 6 HOH A 67 568 567 HOH HOH . H 6 HOH A 68 569 568 HOH HOH . H 6 HOH A 69 570 569 HOH HOH . H 6 HOH A 70 571 570 HOH HOH . H 6 HOH A 71 572 571 HOH HOH . H 6 HOH A 72 573 572 HOH HOH . H 6 HOH A 73 574 573 HOH HOH . H 6 HOH A 74 575 574 HOH HOH . H 6 HOH A 75 576 575 HOH HOH . H 6 HOH A 76 577 576 HOH HOH . H 6 HOH A 77 578 577 HOH HOH . H 6 HOH A 78 579 578 HOH HOH . H 6 HOH A 79 580 579 HOH HOH . H 6 HOH A 80 581 580 HOH HOH . H 6 HOH A 81 582 581 HOH HOH . H 6 HOH A 82 583 582 HOH HOH . H 6 HOH A 83 584 583 HOH HOH . H 6 HOH A 84 585 584 HOH HOH . H 6 HOH A 85 586 585 HOH HOH . H 6 HOH A 86 587 586 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . A E 3 73.174 21.336 -16.879 0.71 36.55 ? C1 NAG 477 A 1 HETATM 2 C C2 NAG . . A E 3 72.947 22.478 -17.912 0.71 38.74 ? C2 NAG 477 A 1 HETATM 3 C C3 NAG . . A E 3 71.778 23.348 -17.457 0.71 39.4 ? C3 NAG 477 A 1 HETATM 4 C C4 NAG . . A E 3 70.489 22.472 -17.391 0.71 38.34 ? C4 NAG 477 A 1 HETATM 5 C C5 NAG . . A E 3 70.777 21.46 -16.265 0.71 38.21 ? C5 NAG 477 A 1 HETATM 6 C C6 NAG . . A E 3 69.649 20.467 -15.901 0.71 39.01 ? C6 NAG 477 A 1 HETATM 7 C C7 NAG . . A E 3 74.896 23.352 -19.151 0.71 42.48 ? C7 NAG 477 A 1 HETATM 8 C C8 NAG . . A E 3 76.059 24.336 -19.159 0.71 42.7 ? C8 NAG 477 A 1 HETATM 9 N N2 NAG . . A E 3 74.107 23.357 -18.08 0.69 39.01 ? N2 NAG 477 A 1 HETATM 10 O O3 NAG . . A E 3 71.613 24.482 -18.296 0.34 32.03 ? O3 NAG 477 A 1 HETATM 11 O O4 NAG . . A E 3 69.314 23.27 -17.167 0.34 36.27 ? O4 NAG 477 A 1 HETATM 12 O O5 NAG . . A E 3 71.927 20.689 -16.64 0.34 29.75 ? O5 NAG 477 A 1 HETATM 13 O O6 NAG . . A E 3 69.44 19.597 -16.997 0.34 39.13 ? O6 NAG 477 A 1 HETATM 14 O O7 NAG . . A E 3 74.712 22.598 -20.117 0.34 36.22 ? O7 NAG 477 A 1 HETATM 15 H H1 NAG . . A E 3 73.585 21.674 -15.914 1 0 ? H1 NAG 477 A 1 HETATM 16 H H2 NAG . . A E 3 72.664 22.025 -18.878 1 0 ? H2 NAG 477 A 1 HETATM 17 H H3 NAG . . A E 3 71.943 23.697 -16.445 1 0 ? H3 NAG 477 A 1 HETATM 18 H H4 NAG . . A E 3 70.344 21.915 -18.334 1 0 ? H4 NAG 477 A 1 HETATM 19 H H5 NAG . . A E 3 70.999 22.004 -15.337 1 0 ? H5 NAG 477 A 1 HETATM 20 H H61 NAG . . A E 3 68.719 20.995 -15.642 1 0 ? H61 NAG 477 A 1 HETATM 21 H H62 NAG . . A E 3 69.944 19.893 -15.006 1 0 ? H62 NAG 477 A 1 HETATM 22 H H81 NAG . . A E 3 76.922 23.878 -19.66 1 0 ? H81 NAG 477 A 1 HETATM 23 H H82 NAG . . A E 3 76.367 24.61 -18.143 1 0 ? H82 NAG 477 A 1 HETATM 24 H H83 NAG . . A E 3 75.775 25.235 -19.723 1 0 ? H83 NAG 477 A 1 HETATM 25 H HN2 NAG . . A E 3 74.259 24.006 -17.364 1 0 ? HN2 NAG 477 A 1 HETATM 26 H HO3 NAG . . A E 3 70.701 24.777 -18.192 1 0 ? HO3 NAG 477 A 1 HETATM 27 H HO4 NAG . . A E 3 68.551 22.689 -17.256 1 0 ? HO4 NAG 477 A 1 HETATM 28 H HO6 NAG . . A E 3 70.302 19.222 -17.211 1 0 ? HO6 NAG 477 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 28 #