data_1INW # _model_server_result.job_id WDONRW12w5kOJIRFx2bGmQ _model_server_result.datetime_utc '2024-10-18 21:20:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1inw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 1INW # _exptl.entry_id 1INW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.241 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (1S)-4-acetamido-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1INW _cell.length_a 122.08 _cell.length_b 141.67 _cell.length_c 141.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1INW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 200 NAG 2 n B NAG 2 B 2 NAG ? 200 NAG 2 n B MAN 3 B 3 MAN ? 200 MAN 2 n B MAN 4 B 4 MAN ? 200 MAN 2 n B MAN 5 B 5 MAN ? 200 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 92 1_555 A SG CYS 336 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 43 A CYS 124 1_555 A SG CYS 48 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf3 A SG CYS 94 A CYS 175 1_555 A SG CYS 112 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 102 A CYS 183 1_555 A SG CYS 149 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf5 A SG CYS 151 A CYS 232 1_555 A SG CYS 156 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 197 A CYS 278 1_555 A SG CYS 210 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 199 A CYS 280 1_555 A SG CYS 208 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf8 A SG CYS 237 A CYS 318 1_555 A SG CYS 256 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf9 A SG CYS 340 A CYS 421 1_555 A SG CYS 366 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 5 A ASN 86 1_555 C C1 NAG . A NAG 470 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A ND2 ASN 65 A ASN 146 1_555 D C1 NAG . A NAG 471 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.473 ? covale ? covale3 A ND2 ASN 119 A ASN 200 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 A ND2 ASN 153 A ASN 234 1_555 E C1 NAG . A NAG 477 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.467 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale7 B O3 MAN . B MAN 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale8 B O6 MAN . B MAN 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A O ASP 212 A ASP 293 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A O GLY 216 A GLY 297 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 A OD2 ASP 243 A ASP 324 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc4 A O GLY 264 A GLY 345 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 A O GLN 266 A GLN 347 1_555 G CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C10 H20 N O9 P' _chem_comp.formula_weight 329.241 _chem_comp.id AXP _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-4-acetamido-1,5-anhydro-2,4-dideoxy-1-phosphono-D-glycero-D-galacto-octitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1INW _atom_sites.fract_transf_matrix[1][1] 0.008191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 470 86 NAG NAG A D 3 NAG A 1 471 146 NAG NAG A E 3 NAG A 1 477 234 NAG NAG A F 4 AXP A 1 500 500 AXP AXP . G 5 CA A 1 501 470 CA CA . H 6 HOH A 1 502 501 HOH HOH . H 6 HOH A 2 503 502 HOH HOH . H 6 HOH A 3 504 503 HOH HOH . H 6 HOH A 4 505 504 HOH HOH . H 6 HOH A 5 506 505 HOH HOH . H 6 HOH A 6 507 506 HOH HOH . H 6 HOH A 7 508 507 HOH HOH . H 6 HOH A 8 509 508 HOH HOH . H 6 HOH A 9 510 509 HOH HOH . H 6 HOH A 10 511 510 HOH HOH . H 6 HOH A 11 512 511 HOH HOH . H 6 HOH A 12 513 512 HOH HOH . H 6 HOH A 13 514 513 HOH HOH . H 6 HOH A 14 515 514 HOH HOH . H 6 HOH A 15 516 515 HOH HOH . H 6 HOH A 16 517 516 HOH HOH . H 6 HOH A 17 518 517 HOH HOH . H 6 HOH A 18 519 518 HOH HOH . H 6 HOH A 19 520 519 HOH HOH . H 6 HOH A 20 521 520 HOH HOH . H 6 HOH A 21 522 521 HOH HOH . H 6 HOH A 22 523 522 HOH HOH . H 6 HOH A 23 524 523 HOH HOH . H 6 HOH A 24 525 524 HOH HOH . H 6 HOH A 25 526 525 HOH HOH . H 6 HOH A 26 527 526 HOH HOH . H 6 HOH A 27 528 527 HOH HOH . H 6 HOH A 28 529 528 HOH HOH . H 6 HOH A 29 530 529 HOH HOH . H 6 HOH A 30 531 530 HOH HOH . H 6 HOH A 31 532 531 HOH HOH . H 6 HOH A 32 533 532 HOH HOH . H 6 HOH A 33 534 533 HOH HOH . H 6 HOH A 34 535 534 HOH HOH . H 6 HOH A 35 536 535 HOH HOH . H 6 HOH A 36 537 536 HOH HOH . H 6 HOH A 37 538 537 HOH HOH . H 6 HOH A 38 539 538 HOH HOH . H 6 HOH A 39 540 539 HOH HOH . H 6 HOH A 40 541 540 HOH HOH . H 6 HOH A 41 542 541 HOH HOH . H 6 HOH A 42 543 542 HOH HOH . H 6 HOH A 43 544 543 HOH HOH . H 6 HOH A 44 545 544 HOH HOH . H 6 HOH A 45 546 545 HOH HOH . H 6 HOH A 46 547 546 HOH HOH . H 6 HOH A 47 548 547 HOH HOH . H 6 HOH A 48 549 548 HOH HOH . H 6 HOH A 49 550 549 HOH HOH . H 6 HOH A 50 551 550 HOH HOH . H 6 HOH A 51 552 551 HOH HOH . H 6 HOH A 52 553 552 HOH HOH . H 6 HOH A 53 554 553 HOH HOH . H 6 HOH A 54 555 554 HOH HOH . H 6 HOH A 55 556 555 HOH HOH . H 6 HOH A 56 557 556 HOH HOH . H 6 HOH A 57 558 557 HOH HOH . H 6 HOH A 58 559 558 HOH HOH . H 6 HOH A 59 560 559 HOH HOH . H 6 HOH A 60 561 560 HOH HOH . H 6 HOH A 61 562 561 HOH HOH . H 6 HOH A 62 563 562 HOH HOH . H 6 HOH A 63 564 563 HOH HOH . H 6 HOH A 64 565 564 HOH HOH . H 6 HOH A 65 566 565 HOH HOH . H 6 HOH A 66 567 566 HOH HOH . H 6 HOH A 67 568 567 HOH HOH . H 6 HOH A 68 569 568 HOH HOH . H 6 HOH A 69 570 569 HOH HOH . H 6 HOH A 70 571 570 HOH HOH . H 6 HOH A 71 572 571 HOH HOH . H 6 HOH A 72 573 572 HOH HOH . H 6 HOH A 73 574 573 HOH HOH . H 6 HOH A 74 575 574 HOH HOH . H 6 HOH A 75 576 575 HOH HOH . H 6 HOH A 76 577 576 HOH HOH . H 6 HOH A 77 578 577 HOH HOH . H 6 HOH A 78 579 578 HOH HOH . H 6 HOH A 79 580 579 HOH HOH . H 6 HOH A 80 581 580 HOH HOH . H 6 HOH A 81 582 581 HOH HOH . H 6 HOH A 82 583 582 HOH HOH . H 6 HOH A 83 584 583 HOH HOH . H 6 HOH A 84 585 584 HOH HOH . H 6 HOH A 85 586 585 HOH HOH . H 6 HOH A 86 587 586 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 AXP . . . F 4 109.811 23.485 -20.392 0.93 23.43 ? P1 AXP 500 A 1 HETATM 2 C C2 AXP . . . F 4 108.923 22.311 -21.435 1 16.02 ? C2 AXP 500 A 1 HETATM 3 C C3 AXP . . . F 4 108.425 21.092 -20.594 1 16.02 ? C3 AXP 500 A 1 HETATM 4 C C4 AXP . . . F 4 107.447 20.229 -21.436 1 16.02 ? C4 AXP 500 A 1 HETATM 5 C C5 AXP . . . F 4 107.307 20.63 -22.915 1 16.02 ? C5 AXP 500 A 1 HETATM 6 C C6 AXP . . . F 4 107.055 22.162 -23.088 1 16.02 ? C6 AXP 500 A 1 HETATM 7 C C7 AXP . . . F 4 107.314 22.643 -24.495 1 16.02 ? C7 AXP 500 A 1 HETATM 8 C C8 AXP . . . F 4 106.961 24.057 -24.703 1 16.02 ? C8 AXP 500 A 1 HETATM 9 C C9 AXP . . . F 4 107.208 24.549 -26.121 1 16.02 ? C9 AXP 500 A 1 HETATM 10 C C10 AXP . . . F 4 106.294 19.116 -24.527 1 16.02 ? C10 AXP 500 A 1 HETATM 11 C C11 AXP . . . F 4 105.056 18.428 -24.973 1 16.02 ? C11 AXP 500 A 1 HETATM 12 N N5 AXP . . . F 4 106.158 19.894 -23.461 0.72 25.63 ? N5 AXP 500 A 1 HETATM 13 O O1P AXP . . . F 4 109.15 24.769 -20.062 1 15 ? O1P AXP 500 A 1 HETATM 14 O O2P AXP . . . F 4 110.874 23.103 -19.444 1 15 ? O2P AXP 500 A 1 HETATM 15 O O3P AXP . . . F 4 110.764 23.912 -21.458 1 15 ? O3P AXP 500 A 1 HETATM 16 O O4 AXP . . . F 4 107.841 18.88 -21.515 0.95 19.52 ? O4 AXP 500 A 1 HETATM 17 O O6 AXP . . . F 4 107.952 22.91 -22.201 0.95 19.52 ? O6 AXP 500 A 1 HETATM 18 O O7 AXP . . . F 4 108.69 22.556 -24.636 0.95 19.52 ? O7 AXP 500 A 1 HETATM 19 O O8 AXP . . . F 4 105.594 24.088 -24.472 0.95 19.52 ? O8 AXP 500 A 1 HETATM 20 O O9 AXP . . . F 4 106.045 24.522 -26.904 0.95 19.52 ? O9 AXP 500 A 1 HETATM 21 O O10 AXP . . . F 4 107.352 18.983 -25.109 0.95 19.52 ? O10 AXP 500 A 1 HETATM 22 H H2 AXP . . . F 4 109.594 21.945 -22.225 1 0 ? H2 AXP 500 A 1 HETATM 23 H H32 AXP . . . F 4 107.984 21.258 -19.577 1 0 ? H32 AXP 500 A 1 HETATM 24 H H31 AXP . . . F 4 109.336 20.535 -20.342 1 0 ? H31 AXP 500 A 1 HETATM 25 H H4 AXP . . . F 4 106.456 20.305 -20.958 1 0 ? H4 AXP 500 A 1 HETATM 26 H H5 AXP . . . F 4 108.274 20.416 -23.413 1 0 ? H5 AXP 500 A 1 HETATM 27 H H6 AXP . . . F 4 106.012 22.369 -22.799 1 0 ? H6 AXP 500 A 1 HETATM 28 H H7 AXP . . . F 4 106.803 22.03 -25.258 1 0 ? H7 AXP 500 A 1 HETATM 29 H H8 AXP . . . F 4 107.499 24.711 -23.982 1 0 ? H8 AXP 500 A 1 HETATM 30 H H92 AXP . . . F 4 108.003 23.956 -26.605 1 0 ? H92 AXP 500 A 1 HETATM 31 H H91 AXP . . . F 4 107.615 25.574 -26.1 1 0 ? H91 AXP 500 A 1 HETATM 32 H H111 AXP . . . F 4 104.504 18 -24.124 1 0 ? H111 AXP 500 A 1 HETATM 33 H H113 AXP . . . F 4 105.305 17.62 -25.674 1 0 ? H113 AXP 500 A 1 HETATM 34 H H112 AXP . . . F 4 104.431 19.145 -25.507 1 0 ? H112 AXP 500 A 1 HETATM 35 H HN5 AXP . . . F 4 105.302 19.991 -22.988 1 0 ? HN5 AXP 500 A 1 HETATM 36 H HOP3 AXP . . . F 4 111.527 24.347 -21.063 1 0 ? HOP3 AXP 500 A 1 HETATM 37 H HO4 AXP . . . F 4 107.455 18.484 -22.312 1 0 ? HO4 AXP 500 A 1 HETATM 38 H HO7 AXP . . . F 4 109.078 22.794 -23.762 1 0 ? HO7 AXP 500 A 1 HETATM 39 H HO8 AXP . . . F 4 105.462 24.549 -23.634 1 0 ? HO8 AXP 500 A 1 HETATM 40 H HO9 AXP . . . F 4 105.398 24.068 -26.354 1 0 ? HO9 AXP 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #