data_1INX # _model_server_result.job_id iUTdC1BK5BHO86IMjTbn3w _model_server_result.datetime_utc '2024-11-25 07:51:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1inx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":470}' # _entry.id 1INX # _exptl.entry_id 1INX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1INX _cell.length_a 120.42 _cell.length_b 139.83 _cell.length_c 140.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1INX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 200 NAG 2 n B NAG 2 B 2 NAG ? 200 NAG 2 n B BMA 3 B 3 BMA ? 200 MAN 2 n B MAN 4 B 4 MAN ? 200 MAN 2 n B MAN 5 B 5 MAN ? 200 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 92 1_555 A SG CYS 336 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 43 A CYS 124 1_555 A SG CYS 48 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 94 A CYS 175 1_555 A SG CYS 112 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 A SG CYS 102 A CYS 183 1_555 A SG CYS 149 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 151 A CYS 232 1_555 A SG CYS 156 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 197 A CYS 278 1_555 A SG CYS 210 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 A SG CYS 199 A CYS 280 1_555 A SG CYS 208 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 237 A CYS 318 1_555 A SG CYS 256 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 A SG CYS 340 A CYS 421 1_555 A SG CYS 366 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale1 A ND2 ASN 5 A ASN 86 1_555 C C1 NAG . A NAG 470 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 65 A ASN 146 1_555 D C1 NAG . A NAG 471 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.467 ? covale ? covale3 A ND2 ASN 119 A ASN 200 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 A ND2 ASN 153 A ASN 234 1_555 E C1 NAG . A NAG 477 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.473 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale7 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale8 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 A O ASP 212 A ASP 293 1_555 F CA CA . A CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc2 A O GLY 216 A GLY 297 1_555 F CA CA . A CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc3 A OD2 ASP 243 A ASP 324 1_555 F CA CA . A CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc4 A O GLY 264 A GLY 345 1_555 F CA CA . A CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 A O GLN 266 A GLN 347 1_555 F CA CA . A CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 326 n n C1 O1 NAG sing 327 n n C1 O5 NAG sing 328 n n C1 H1 NAG sing 329 n n C2 C3 NAG sing 330 n n C2 N2 NAG sing 331 n n C2 H2 NAG sing 332 n n C3 C4 NAG sing 333 n n C3 O3 NAG sing 334 n n C3 H3 NAG sing 335 n n C4 C5 NAG sing 336 n n C4 O4 NAG sing 337 n n C4 H4 NAG sing 338 n n C5 C6 NAG sing 339 n n C5 O5 NAG sing 340 n n C5 H5 NAG sing 341 n n C6 O6 NAG sing 342 n n C6 H61 NAG sing 343 n n C6 H62 NAG sing 344 n n C7 C8 NAG sing 345 n n C7 N2 NAG sing 346 n n C7 O7 NAG doub 347 n n C8 H81 NAG sing 348 n n C8 H82 NAG sing 349 n n C8 H83 NAG sing 350 n n N2 HN2 NAG sing 351 n n O1 HO1 NAG sing 352 n n O3 HO3 NAG sing 353 n n O4 HO4 NAG sing 354 n n O6 HO6 NAG sing 355 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1INX _atom_sites.fract_transf_matrix[1][1] 0.008304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 470 86 NAG NAG A D 3 NAG A 1 471 146 NAG NAG A E 3 NAG A 1 477 234 NAG NAG A F 4 CA A 1 478 470 CA CA . G 5 EQP A 1 500 500 EQP EQP . H 6 HOH A 1 501 501 HOH HOH . H 6 HOH A 2 502 502 HOH HOH . H 6 HOH A 3 503 503 HOH HOH . H 6 HOH A 4 504 504 HOH HOH . H 6 HOH A 5 505 505 HOH HOH . H 6 HOH A 6 506 506 HOH HOH . H 6 HOH A 7 507 507 HOH HOH . H 6 HOH A 8 508 508 HOH HOH . H 6 HOH A 9 509 509 HOH HOH . H 6 HOH A 10 510 510 HOH HOH . H 6 HOH A 11 511 511 HOH HOH . H 6 HOH A 12 512 512 HOH HOH . H 6 HOH A 13 513 513 HOH HOH . H 6 HOH A 14 514 514 HOH HOH . H 6 HOH A 15 515 515 HOH HOH . H 6 HOH A 16 516 516 HOH HOH . H 6 HOH A 17 517 517 HOH HOH . H 6 HOH A 18 518 518 HOH HOH . H 6 HOH A 19 519 519 HOH HOH . H 6 HOH A 20 520 520 HOH HOH . H 6 HOH A 21 521 521 HOH HOH . H 6 HOH A 22 522 522 HOH HOH . H 6 HOH A 23 523 523 HOH HOH . H 6 HOH A 24 524 524 HOH HOH . H 6 HOH A 25 525 525 HOH HOH . H 6 HOH A 26 526 526 HOH HOH . H 6 HOH A 27 527 527 HOH HOH . H 6 HOH A 28 528 528 HOH HOH . H 6 HOH A 29 529 529 HOH HOH . H 6 HOH A 30 530 530 HOH HOH . H 6 HOH A 31 531 531 HOH HOH . H 6 HOH A 32 532 532 HOH HOH . H 6 HOH A 33 533 533 HOH HOH . H 6 HOH A 34 534 534 HOH HOH . H 6 HOH A 35 535 535 HOH HOH . H 6 HOH A 36 536 536 HOH HOH . H 6 HOH A 37 537 537 HOH HOH . H 6 HOH A 38 538 538 HOH HOH . H 6 HOH A 39 539 539 HOH HOH . H 6 HOH A 40 540 540 HOH HOH . H 6 HOH A 41 541 541 HOH HOH . H 6 HOH A 42 542 542 HOH HOH . H 6 HOH A 43 543 543 HOH HOH . H 6 HOH A 44 544 544 HOH HOH . H 6 HOH A 45 545 545 HOH HOH . H 6 HOH A 46 546 546 HOH HOH . H 6 HOH A 47 547 547 HOH HOH . H 6 HOH A 48 548 548 HOH HOH . H 6 HOH A 49 549 549 HOH HOH . H 6 HOH A 50 550 550 HOH HOH . H 6 HOH A 51 551 551 HOH HOH . H 6 HOH A 52 552 552 HOH HOH . H 6 HOH A 53 553 553 HOH HOH . H 6 HOH A 54 554 554 HOH HOH . H 6 HOH A 55 555 555 HOH HOH . H 6 HOH A 56 556 556 HOH HOH . H 6 HOH A 57 557 557 HOH HOH . H 6 HOH A 58 558 558 HOH HOH . H 6 HOH A 59 559 559 HOH HOH . H 6 HOH A 60 560 560 HOH HOH . H 6 HOH A 61 561 561 HOH HOH . H 6 HOH A 62 562 562 HOH HOH . H 6 HOH A 63 563 563 HOH HOH . H 6 HOH A 64 564 564 HOH HOH . H 6 HOH A 65 565 565 HOH HOH . H 6 HOH A 66 566 566 HOH HOH . H 6 HOH A 67 567 567 HOH HOH . H 6 HOH A 68 568 568 HOH HOH . H 6 HOH A 69 569 569 HOH HOH . H 6 HOH A 70 570 570 HOH HOH . H 6 HOH A 71 571 571 HOH HOH . H 6 HOH A 72 572 572 HOH HOH . H 6 HOH A 73 573 573 HOH HOH . H 6 HOH A 74 574 574 HOH HOH . H 6 HOH A 75 575 575 HOH HOH . H 6 HOH A 76 576 576 HOH HOH . H 6 HOH A 77 577 577 HOH HOH . H 6 HOH A 78 578 578 HOH HOH . H 6 HOH A 79 579 579 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . A C 3 73.49 21.236 -10.497 0.89 23.2 ? C1 NAG 470 A 1 HETATM 2 C C2 NAG . . A C 3 72.091 21.701 -10.805 0.89 27.29 ? C2 NAG 470 A 1 HETATM 3 C C3 NAG . . A C 3 71.326 21.753 -9.529 0.89 30.46 ? C3 NAG 470 A 1 HETATM 4 C C4 NAG . . A C 3 71.334 20.396 -8.789 0.89 32.09 ? C4 NAG 470 A 1 HETATM 5 C C5 NAG . . A C 3 72.804 20.048 -8.515 0.89 27.95 ? C5 NAG 470 A 1 HETATM 6 C C6 NAG . . A C 3 73.007 18.744 -7.794 0.89 28.54 ? C6 NAG 470 A 1 HETATM 7 C C7 NAG . . A C 3 72.212 23.267 -12.716 0.89 27.77 ? C7 NAG 470 A 1 HETATM 8 C C8 NAG . . A C 3 72.088 24.696 -13.182 0.89 33.71 ? C8 NAG 470 A 1 HETATM 9 N N2 NAG . . A C 3 72.012 23.015 -11.426 0.67 33.17 ? N2 NAG 470 A 1 HETATM 10 O O3 NAG . . A C 3 69.986 22.117 -9.775 0.39 33.41 ? O3 NAG 470 A 1 HETATM 11 O O4 NAG . . A C 3 70.548 20.51 -7.6 0.39 37.21 ? O4 NAG 470 A 1 HETATM 12 O O5 NAG . . A C 3 73.47 19.99 -9.779 0.39 24.91 ? O5 NAG 470 A 1 HETATM 13 O O6 NAG . . A C 3 72.713 17.712 -8.678 0.39 29.26 ? O6 NAG 470 A 1 HETATM 14 O O7 NAG . . A C 3 72.495 22.392 -13.539 0.39 29.94 ? O7 NAG 470 A 1 HETATM 15 H H1 NAG . . A C 3 74.022 21.983 -9.876 1 0 ? H1 NAG 470 A 1 HETATM 16 H H2 NAG . . A C 3 71.612 20.957 -11.466 1 0 ? H2 NAG 470 A 1 HETATM 17 H H3 NAG . . A C 3 71.775 22.509 -8.86 1 0 ? H3 NAG 470 A 1 HETATM 18 H H4 NAG . . A C 3 70.892 19.617 -9.437 1 0 ? H4 NAG 470 A 1 HETATM 19 H H5 NAG . . A C 3 73.258 20.845 -7.896 1 0 ? H5 NAG 470 A 1 HETATM 20 H H61 NAG . . A C 3 72.375 18.688 -6.897 1 0 ? H61 NAG 470 A 1 HETATM 21 H H62 NAG . . A C 3 74.055 18.653 -7.472 1 0 ? H62 NAG 470 A 1 HETATM 22 H H81 NAG . . A C 3 71.626 24.73 -14.178 1 0 ? H81 NAG 470 A 1 HETATM 23 H H82 NAG . . A C 3 73.082 25.149 -13.228 1 0 ? H82 NAG 470 A 1 HETATM 24 H H83 NAG . . A C 3 71.455 25.287 -12.505 1 0 ? H83 NAG 470 A 1 HETATM 25 H HN2 NAG . . A C 3 71.78 23.756 -10.833 1 0 ? HN2 NAG 470 A 1 HETATM 26 H HO3 NAG . . A C 3 69.499 21.87 -8.974 1 0 ? HO3 NAG 470 A 1 HETATM 27 H HO4 NAG . . A C 3 70.288 19.627 -7.314 1 0 ? HO4 NAG 470 A 1 HETATM 28 H HO6 NAG . . A C 3 73.115 17.941 -9.53 1 0 ? HO6 NAG 470 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #